Wall clock time and date at job start Sat Apr 11 2020 05:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47165 * 2 1 4 4 N 1.46501 * 109.47043 * 240.00360 * 2 1 3 5 5 C 1.36940 * 120.00052 * 84.99877 * 4 2 1 6 6 H 1.07995 * 119.99931 * 0.02562 * 5 4 2 7 7 C 1.38813 * 119.99737 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99660 * 180.02562 * 7 5 4 9 9 Si 1.86792 * 120.00263 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47329 * 90.00041 * 9 7 5 11 11 H 1.48499 * 109.47397 * 210.00072 * 9 7 5 12 12 H 1.48497 * 109.47240 * 329.99859 * 9 7 5 13 13 C 1.52993 * 109.47334 * 120.00292 * 2 1 3 14 14 H 1.09004 * 109.69888 * 306.42932 * 13 2 1 15 15 C 1.53622 * 109.66487 * 67.02060 * 13 2 1 16 16 C 1.53041 * 109.24553 * 174.55273 * 15 13 2 17 17 C 1.53038 * 109.53332 * 298.51244 * 16 15 13 18 18 C 1.53192 * 109.31877 * 61.36202 * 17 16 15 19 19 N 1.46923 * 108.77461 * 305.36651 * 18 17 16 20 20 C 1.34780 * 120.63091 * 233.58427 * 19 18 17 21 21 O 1.21281 * 119.99723 * 175.06599 * 20 19 18 22 22 C 1.50696 * 119.99748 * 355.06040 * 20 19 18 23 23 C 1.52997 * 109.46732 * 180.02562 * 22 20 19 24 24 C 1.50709 * 109.47121 * 180.02562 * 23 22 20 25 25 C 1.33629 * 126.03657 * 90.01614 * 24 23 22 26 26 N 1.31790 * 114.49815 * 179.72140 * 25 24 23 27 27 C 1.29023 * 117.12480 * 0.47305 * 26 25 24 28 28 S 1.70979 * 110.16650 * 359.54743 * 27 26 25 29 29 H 1.08999 * 109.47190 * 184.93630 * 1 2 3 30 30 H 1.08994 * 109.47098 * 304.93921 * 1 2 3 31 31 H 1.09003 * 109.47054 * 64.93506 * 1 2 3 32 32 H 0.97004 * 120.00120 * 264.99959 * 4 2 1 33 33 H 0.97004 * 119.99968 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.63673 * 54.55502 * 15 13 2 35 35 H 1.09005 * 109.43419 * 294.41696 * 15 13 2 36 36 H 1.08999 * 109.46520 * 178.48761 * 16 15 13 37 37 H 1.09004 * 109.46044 * 58.52789 * 16 15 13 38 38 H 1.09000 * 109.49643 * 301.40632 * 17 16 15 39 39 H 1.09001 * 109.49790 * 181.31886 * 17 16 15 40 40 H 1.08994 * 109.59129 * 185.57429 * 18 17 16 41 41 H 1.09007 * 109.70247 * 65.22075 * 18 17 16 42 42 H 1.09003 * 109.47279 * 60.00383 * 22 20 19 43 43 H 1.08999 * 109.47184 * 300.00273 * 22 20 19 44 44 H 1.09003 * 109.47169 * 60.00649 * 23 22 20 45 45 H 1.08999 * 109.47433 * 300.00028 * 23 22 20 46 46 H 1.08003 * 122.75392 * 359.96721 * 25 24 23 47 47 H 1.08000 * 124.91538 * 179.81700 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8926 1.0406 -2.4241 7 6 2.6113 -0.6618 -3.5093 8 7 2.7374 -0.0050 -4.6430 9 14 3.0555 -2.4742 -3.4256 10 1 1.8581 -3.2927 -3.7444 11 1 4.1305 -2.7664 -4.4075 12 1 3.5312 -2.8046 -2.0582 13 6 2.0400 -0.7213 1.2491 14 1 1.5880 -0.2810 2.1380 15 6 1.6799 -2.2125 1.1683 16 6 2.3104 -2.9486 2.3527 17 6 3.8336 -2.8169 2.2848 18 6 4.2188 -1.3370 2.3748 19 7 3.5020 -0.5972 1.3272 20 6 4.1722 0.1847 0.4577 21 8 3.5816 0.7190 -0.4570 22 6 5.6553 0.3950 0.6221 23 6 6.1657 1.3168 -0.4873 24 6 7.6490 1.5267 -0.3233 25 6 8.6137 0.7768 -0.8644 26 7 9.8381 1.1697 -0.5758 27 6 9.9598 2.2037 0.1863 28 16 8.4176 2.8048 0.6149 29 1 -0.3633 -1.0238 0.0884 30 1 -0.3633 0.5885 0.8424 31 1 -0.3633 0.4354 -0.9309 32 1 2.2490 -1.6317 -1.1527 33 1 3.0601 -0.4624 -5.4352 34 1 2.0593 -2.6309 0.2361 35 1 0.5964 -2.3264 1.2043 36 1 2.0349 -4.0025 2.3136 37 1 1.9495 -2.5134 3.2846 38 1 4.1928 -3.2297 1.3422 39 1 4.2832 -3.3610 3.1155 40 1 5.2935 -1.2295 2.2279 41 1 3.9428 -0.9442 3.3535 42 1 6.1674 -0.5653 0.5614 43 1 5.8522 0.8511 1.5923 44 1 5.6536 2.2771 -0.4261 45 1 5.9687 0.8611 -1.4577 46 1 8.4069 -0.0787 -1.4904 47 1 10.8997 2.6305 0.5037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265090340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:02 Heat of formation + Delta-G solvation = 58.476769 kcal Electronic energy + Delta-G solvation = -28662.801570 eV Core-core repulsion = 24974.324971 eV Total energy + Delta-G solvation = -3688.476599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30766 -39.61350 -37.15971 -35.54525 -33.81383 -32.55281 -32.12412 -30.01395 -29.28842 -28.46118 -26.17839 -24.77846 -23.96632 -23.33448 -22.49790 -20.85161 -20.12819 -19.70005 -18.49655 -18.04189 -17.32892 -16.46753 -15.63817 -15.53834 -15.26239 -14.62805 -14.48035 -14.42579 -14.06421 -13.88325 -13.77462 -13.59291 -13.38585 -13.28257 -12.55263 -12.47453 -12.30181 -12.14216 -12.00197 -11.89119 -11.59668 -11.48669 -11.38222 -10.94507 -10.81062 -10.76374 -10.69443 -10.60882 -10.48041 -10.13237 -9.85288 -9.70601 -9.31759 -9.28619 -8.96948 -8.73023 -8.28397 -7.97817 -6.87893 -5.48685 -2.77146 0.66223 1.30262 1.69609 2.80110 3.26449 3.39693 3.45637 3.48659 3.55222 4.28631 4.65347 4.77910 4.80048 4.90732 4.96583 5.08189 5.17275 5.18516 5.21243 5.32088 5.38043 5.46684 5.48964 5.54562 5.60984 5.65934 5.76303 5.81282 5.85330 5.98746 6.02171 6.09821 6.11861 6.15266 6.17470 6.33123 6.36240 6.41203 6.46447 6.68416 6.88344 7.01351 7.32106 7.64059 7.91830 8.30714 8.68704 8.93095 9.49704 10.21921 10.43465 11.71971 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.004528 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.696089 B = 6182.243689 C = 7533.474744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.177 3.823 3 H 0.089 0.911 4 N -0.729 5.729 5 C -0.176 4.176 6 H 0.087 0.913 7 C -0.011 4.011 8 N -0.948 5.948 9 Si 0.872 3.128 10 H -0.291 1.291 11 H -0.297 1.297 12 H -0.285 1.285 13 C 0.144 3.856 14 H 0.066 0.934 15 C -0.135 4.135 16 C -0.117 4.117 17 C -0.137 4.137 18 C 0.112 3.888 19 N -0.617 5.617 20 C 0.485 3.515 21 O -0.441 6.441 22 C -0.129 4.129 23 C -0.031 4.031 24 C -0.194 4.194 25 C 0.024 3.976 26 N -0.468 5.468 27 C 0.005 3.995 28 S 0.110 5.890 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.354 0.646 33 H 0.252 0.748 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.177 0.823 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 0.333 19.563 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.068 3.932 3 H 0.106 0.894 4 N -0.372 5.372 5 C -0.306 4.306 6 H 0.105 0.895 7 C -0.204 4.204 8 N -0.599 5.599 9 Si 0.705 3.295 10 H -0.219 1.219 11 H -0.224 1.224 12 H -0.212 1.212 13 C 0.040 3.960 14 H 0.083 0.917 15 C -0.174 4.174 16 C -0.154 4.154 17 C -0.175 4.175 18 C -0.011 4.011 19 N -0.354 5.354 20 C 0.270 3.730 21 O -0.310 6.310 22 C -0.170 4.170 23 C -0.071 4.071 24 C -0.315 4.315 25 C -0.126 4.126 26 N -0.182 5.182 27 C -0.292 4.292 28 S 0.362 5.638 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.188 0.812 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.122 0.878 46 H 0.194 0.806 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 7.968 1.409 19.260 20.891 hybrid contribution 0.465 -2.403 -0.487 2.495 sum 8.433 -0.994 18.773 20.604 Atomic orbital electron populations 1.22581 0.99783 1.00150 1.00739 1.20633 0.90230 0.97994 0.84332 0.89374 1.42806 1.78953 1.08439 1.07051 1.18939 1.32308 0.94982 0.84399 0.89515 1.24511 1.03505 0.96315 0.96052 1.69677 1.55413 1.34702 1.00152 0.86719 0.77911 0.88659 0.76214 1.21860 1.22384 1.21198 1.21693 0.79363 0.95347 0.99557 0.91655 1.22093 1.00786 0.95790 0.98701 1.21500 0.95041 1.00260 0.98644 1.21922 0.96852 0.96392 1.02331 1.21580 0.96870 0.91535 0.91140 1.47938 1.06864 1.47876 1.32713 1.20463 0.88967 0.81199 0.82353 1.91090 1.66914 1.45695 1.27328 1.21673 0.94531 1.01069 0.99756 1.19866 0.85275 1.01312 1.00646 1.26184 1.01884 0.99270 1.04155 1.21842 0.85616 1.02331 1.02810 1.66314 1.25182 1.13152 1.13505 1.28292 1.02228 0.97485 1.01220 1.84026 1.01210 1.30622 1.47987 0.93991 0.94595 0.92054 0.81225 0.93795 0.91174 0.90867 0.92178 0.92114 0.91541 0.91335 0.90324 0.92089 0.89694 0.89945 0.89492 0.87785 0.80642 0.78785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.39 37.16 0.35 -2.67 16 2 C 0.18 3.41 1.88 -67.93 -0.13 3.28 16 3 H 0.09 1.90 5.90 -52.20 -0.31 1.59 16 4 N -0.73 -17.07 3.43 -53.43 -0.18 -17.25 16 5 C -0.18 -4.98 8.47 -15.06 -0.13 -5.11 16 6 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.95 -30.76 13.97 55.49 0.78 -29.98 16 9 Si 0.87 23.00 27.73 -169.99 -4.71 18.29 16 10 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 11 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 12 H -0.29 -7.11 6.52 56.52 0.37 -6.74 16 13 C 0.14 2.19 2.73 -67.38 -0.18 2.00 16 14 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.14 -1.92 4.89 -26.39 -0.13 -2.05 16 16 C -0.12 -1.28 5.88 -26.69 -0.16 -1.44 16 17 C -0.14 -1.44 6.08 -26.61 -0.16 -1.60 16 18 C 0.11 1.20 6.33 -3.71 -0.02 1.17 16 19 N -0.62 -8.93 2.96 -164.97 -0.49 -9.42 16 20 C 0.48 8.10 7.39 -10.99 -0.08 8.01 16 21 O -0.44 -9.42 8.72 5.56 0.05 -9.37 16 22 C -0.13 -1.69 4.08 -27.89 -0.11 -1.80 16 23 C -0.03 -0.44 5.04 -27.88 -0.14 -0.58 16 24 C -0.19 -2.49 5.85 -35.92 -0.21 -2.70 16 25 C 0.02 0.32 11.25 -19.18 -0.22 0.11 16 26 N -0.47 -6.25 10.54 -15.75 -0.17 -6.42 16 27 C 0.01 0.06 12.23 51.58 0.63 0.69 16 28 S 0.11 1.13 23.22 -107.50 -2.50 -1.36 16 29 H 0.04 0.69 6.57 -51.93 -0.34 0.35 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.35 8.35 3.46 -40.82 -0.14 8.21 16 33 H 0.25 7.91 8.31 -40.82 -0.34 7.57 16 34 H 0.07 1.22 6.05 -51.93 -0.31 0.90 16 35 H 0.07 0.98 6.82 -51.93 -0.35 0.63 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.74 5.96 -51.93 -0.31 0.43 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 1.04 7.48 -51.93 -0.39 0.65 16 43 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 44 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 45 H 0.10 1.81 8.10 -51.93 -0.42 1.39 16 46 H 0.18 2.26 8.06 -52.48 -0.42 1.83 16 47 H 0.20 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -34.55 372.47 -9.64 -44.18 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -7.24 Total: 8.84 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.79 Total: -3.13 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.06 Total: -63.07 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.05 Total: -9.37 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.71 Total: 18.29 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.50 Total: -1.36 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.55 -9.64 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265090340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.661 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds