Wall clock time and date at job start Sat Apr 11 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.36929 * 119.99904 * 275.00051 * 4 2 1 6 6 H 1.08004 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99984 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99951 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00021 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47254 * 89.99741 * 9 7 5 11 11 H 1.48501 * 109.47458 * 209.99436 * 9 7 5 12 12 H 1.48498 * 109.47288 * 329.99773 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 C 1.53041 * 109.46391 * 180.02562 * 13 2 1 15 15 C 1.53190 * 109.31163 * 178.60195 * 14 13 2 16 16 N 1.46929 * 108.76794 * 54.65901 * 15 14 13 17 17 C 1.34771 * 120.63270 * 126.40220 * 16 15 14 18 18 O 1.21285 * 120.00233 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.99897 * 359.97438 * 17 16 15 20 20 C 1.53003 * 109.46781 * 180.02562 * 19 17 16 21 21 C 1.50705 * 109.46781 * 180.02562 * 20 19 17 22 22 C 1.33645 * 122.74964 * 124.73109 * 21 20 19 23 23 S 1.76194 * 107.92276 * 179.97438 * 22 21 20 24 24 C 1.70981 * 90.28298 * 0.27172 * 23 22 21 25 25 N 1.29026 * 110.16763 * 359.84380 * 24 23 22 26 26 C 1.46929 * 118.73418 * 306.38435 * 16 15 14 27 27 C 1.53047 * 109.45869 * 59.97417 * 13 2 1 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 32 32 H 0.97000 * 120.00124 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.46241 * 300.00609 * 13 2 1 34 34 H 1.08991 * 109.49676 * 298.56802 * 14 13 2 35 35 H 1.08996 * 109.49337 * 58.66731 * 14 13 2 36 36 H 1.09004 * 109.60289 * 294.86996 * 15 14 13 37 37 H 1.08997 * 109.70325 * 174.50754 * 15 14 13 38 38 H 1.09001 * 109.47088 * 299.99630 * 19 17 16 39 39 H 1.08999 * 109.47463 * 60.00012 * 19 17 16 40 40 H 1.09001 * 109.46733 * 299.99512 * 20 19 17 41 41 H 1.08992 * 109.47754 * 59.99583 * 20 19 17 42 42 H 1.07996 * 126.03745 * 0.03219 * 22 21 20 43 43 H 1.08004 * 124.91081 * 179.83790 * 24 23 22 44 44 H 1.09000 * 109.58288 * 293.81288 * 26 16 15 45 45 H 1.09000 * 109.69893 * 173.46729 * 26 16 15 46 46 H 1.09005 * 109.49662 * 301.33910 * 27 13 2 47 47 H 1.08993 * 109.49652 * 61.43397 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6620 3.5093 8 7 2.7376 -0.0052 4.6429 9 14 3.0557 -2.4744 3.4254 10 1 4.4886 -2.6165 3.0621 11 1 2.8157 -3.1047 4.7484 12 1 2.2161 -3.1429 2.3990 13 6 2.0400 -0.7213 -1.2492 14 6 3.5704 -0.7217 -1.2486 15 6 4.0773 -1.4750 -2.4825 16 7 3.4747 -0.8771 -3.6819 17 6 4.2482 -0.4584 -4.7030 18 8 3.7387 0.0330 -5.6878 19 6 5.7463 -0.6009 -4.6211 20 6 6.3814 -0.0523 -5.9005 21 6 7.8794 -0.1953 -5.8189 22 6 8.5962 -0.8352 -6.7477 23 16 10.2901 -0.7671 -6.2676 24 6 9.8651 0.1082 -4.8616 25 7 8.5891 0.2949 -4.8226 26 6 2.0129 -0.7448 -3.7469 27 6 1.5292 -0.0001 -2.4987 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.2491 -1.6318 1.1527 32 1 3.0602 -0.4626 5.4351 33 1 1.6766 -1.7489 -1.2490 34 1 3.9345 0.3053 -1.2741 35 1 3.9337 -1.2148 -0.3470 36 1 3.7903 -2.5243 -2.4139 37 1 5.1628 -1.3961 -2.5410 38 1 6.1181 -0.0415 -3.7627 39 1 6.0056 -1.6536 -4.5089 40 1 6.0096 -0.6113 -6.7592 41 1 6.1221 1.0004 -6.0124 42 1 8.2062 -1.3095 -7.6362 43 1 10.5638 0.4545 -4.1143 44 1 1.5576 -1.7346 -3.7813 45 1 1.7341 -0.1832 -4.6385 46 1 0.4394 0.0206 -2.4868 47 1 1.9127 1.0201 -2.5122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267222404.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:21 Heat of formation + Delta-G solvation = 12.078792 kcal Electronic energy + Delta-G solvation = -26788.743586 eV Core-core repulsion = 23098.255020 eV Total energy + Delta-G solvation = -3690.488566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.53174 -39.96779 -38.06321 -35.55421 -33.85713 -32.90336 -31.34008 -30.91909 -30.07656 -28.74560 -26.20796 -25.33018 -24.48017 -23.23378 -22.68319 -20.97992 -19.93056 -19.81961 -18.96136 -18.31004 -17.65684 -17.03208 -16.22502 -15.99517 -15.61358 -14.99330 -14.75648 -14.40804 -14.17267 -14.06797 -13.83315 -13.65783 -13.48596 -13.31192 -13.20816 -12.80126 -12.53177 -12.43601 -12.33177 -12.08313 -11.83338 -11.65624 -11.38437 -11.29986 -11.08836 -10.95913 -10.80829 -10.40770 -10.32856 -10.10540 -10.00712 -9.90879 -9.83656 -9.74830 -9.56823 -9.17415 -8.93369 -8.63310 -7.25810 -5.76515 -3.11400 0.35836 1.03262 1.36395 2.42239 2.56997 2.96985 3.35352 3.37491 3.43964 3.85620 4.36294 4.58327 4.66084 4.79015 4.79464 4.88102 4.91343 4.96260 5.01342 5.15058 5.21501 5.28600 5.32039 5.45744 5.48977 5.59827 5.64839 5.66905 5.75245 5.78447 5.84568 5.90896 5.95060 6.02279 6.14491 6.21183 6.34758 6.37110 6.44730 6.54955 6.64080 6.86026 7.04693 7.35168 7.37205 8.00649 8.10596 8.42830 9.21645 9.94134 10.14444 11.42181 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.002526 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.423879 B =11079.881015 C =12774.089377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.183 3.817 3 H 0.054 0.946 4 N -0.747 5.747 5 C -0.238 4.238 6 H 0.089 0.911 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.882 3.118 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.093 4.093 14 C -0.125 4.125 15 C 0.104 3.896 16 N -0.608 5.608 17 C 0.517 3.483 18 O -0.551 6.551 19 C -0.133 4.133 20 C -0.027 4.027 21 C 0.068 3.932 22 C -0.254 4.254 23 S 0.109 5.891 24 C 0.027 3.973 25 N -0.465 5.465 26 C 0.112 3.888 27 C -0.127 4.127 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.359 0.641 32 H 0.259 0.741 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.178 0.822 43 H 0.201 0.799 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.445 -4.055 -24.613 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.072 0.928 4 N -0.390 5.390 5 C -0.368 4.368 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.584 5.584 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.113 4.113 14 C -0.163 4.163 15 C -0.019 4.019 16 N -0.341 5.341 17 C 0.305 3.695 18 O -0.429 6.429 19 C -0.173 4.173 20 C -0.068 4.068 21 C -0.063 4.063 22 C -0.393 4.393 23 S 0.361 5.639 24 C -0.272 4.272 25 N -0.178 5.178 26 C -0.010 4.010 27 C -0.166 4.166 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.192 0.808 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.195 0.805 43 H 0.217 0.783 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.927 -3.678 -24.883 27.838 hybrid contribution -0.475 -1.310 0.360 1.440 sum 11.452 -4.988 -24.523 27.521 Atomic orbital electron populations 1.22464 0.99041 1.00747 1.00406 1.20191 0.91771 0.95646 0.85040 0.92798 1.42785 1.79795 1.09244 1.07177 1.19067 1.36530 0.95454 0.85745 0.89319 1.24664 1.01681 0.97350 0.95585 1.69700 1.52895 1.35511 1.00273 0.86578 0.78374 0.86953 0.76792 1.21117 1.21882 1.20375 1.21423 0.94958 0.99879 0.94994 1.21902 0.96069 1.01437 0.96890 1.21903 0.98257 0.97190 0.84536 1.48168 1.07221 1.60978 1.17735 1.20618 0.89325 0.77232 0.82300 1.90671 1.75571 1.45031 1.31647 1.21601 0.91633 1.03538 1.00514 1.19924 0.85458 1.03550 0.97825 1.20411 0.98073 0.97567 0.90297 1.26892 0.95236 1.10374 1.06842 1.84084 1.08331 1.51809 1.19637 1.28475 0.95255 1.01921 1.01509 1.66137 1.05072 1.20739 1.25861 1.21621 0.79178 1.00663 0.99576 1.22003 1.01231 0.99763 0.93596 0.93951 0.92549 0.93735 0.80794 0.93129 0.91525 0.91335 0.89632 0.91392 0.89828 0.87756 0.89104 0.89485 0.89204 0.80476 0.78264 0.91776 0.89246 0.90286 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.14 37.16 0.34 -2.48 16 2 C 0.18 3.31 2.47 -67.93 -0.17 3.14 16 3 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 4 N -0.75 -16.76 4.21 -53.43 -0.22 -16.99 16 5 C -0.24 -6.52 10.41 -15.06 -0.16 -6.68 16 6 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 7 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 8 N -0.94 -29.13 13.97 55.49 0.78 -28.36 16 9 Si 0.88 21.61 27.74 -169.99 -4.71 16.89 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 13 C -0.09 -1.33 1.79 -90.57 -0.16 -1.49 16 14 C -0.12 -1.73 5.22 -26.61 -0.14 -1.87 16 15 C 0.10 1.15 6.34 -3.71 -0.02 1.13 16 16 N -0.61 -7.27 2.97 -172.77 -0.51 -7.78 16 17 C 0.52 6.49 7.70 -10.99 -0.08 6.40 16 18 O -0.55 -8.49 15.40 5.55 0.09 -8.40 16 19 C -0.13 -1.33 3.95 -27.88 -0.11 -1.44 16 20 C -0.03 -0.26 5.00 -27.88 -0.14 -0.40 16 21 C 0.07 0.65 6.08 -84.22 -0.51 0.13 16 22 C -0.25 -1.93 11.07 29.12 0.32 -1.60 16 23 S 0.11 0.69 23.22 -107.50 -2.50 -1.81 16 24 C 0.03 0.20 12.23 51.58 0.63 0.83 16 25 N -0.46 -4.78 10.34 -11.89 -0.12 -4.91 16 26 C 0.11 1.32 6.43 -3.71 -0.02 1.29 16 27 C -0.13 -1.57 5.04 -26.61 -0.13 -1.70 16 28 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.36 7.92 5.44 -40.82 -0.22 7.70 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.34 7.41 -51.93 -0.38 0.95 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 38 H 0.10 1.09 7.63 -51.93 -0.40 0.69 16 39 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 40 H 0.09 0.77 7.98 -51.93 -0.41 0.36 16 41 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 42 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 43 H 0.20 0.93 8.06 -52.48 -0.42 0.50 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.12 7.01 -51.93 -0.36 0.75 16 46 H 0.08 0.90 6.36 -51.93 -0.33 0.57 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -33.39 384.71 -9.27 -42.67 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.40 Total: 7.64 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.46 Total: -4.75 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.09 Total: -58.04 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.50 Total: -1.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.39 -9.27 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267222404.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.744 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds