Wall clock time and date at job start Sat Apr 11 2020 05:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47237 * 2 1 4 4 C 1.53006 * 109.47452 * 240.00154 * 2 1 3 5 5 N 1.46898 * 109.47138 * 184.99841 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00058 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00409 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46949 * 60.00154 * 14 12 10 16 16 H 1.48496 * 109.47431 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47561 * 300.00356 * 14 12 10 18 18 N 1.46495 * 109.47359 * 120.00061 * 2 1 3 19 19 C 1.34774 * 120.00080 * 275.00294 * 18 2 1 20 20 O 1.21287 * 120.00094 * 359.97438 * 19 18 2 21 21 C 1.50707 * 120.00316 * 179.97438 * 19 18 2 22 22 H 1.09001 * 109.46725 * 345.00040 * 21 19 18 23 23 F 1.39901 * 109.47242 * 104.99895 * 21 19 18 24 24 C 1.50701 * 109.47004 * 225.00000 * 21 19 18 25 25 C 1.38230 * 119.99874 * 294.72610 * 24 21 19 26 26 C 1.38240 * 119.99393 * 179.79281 * 25 24 21 27 27 C 1.38227 * 120.00571 * 0.43746 * 26 25 24 28 28 C 1.38243 * 119.99889 * 359.81401 * 27 26 25 29 29 C 1.38236 * 119.99648 * 115.00088 * 24 21 19 30 30 H 1.08990 * 109.47506 * 299.99674 * 1 2 3 31 31 H 1.09002 * 109.47542 * 60.00366 * 1 2 3 32 32 H 1.09006 * 109.46971 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46770 * 64.99788 * 4 2 1 34 34 H 1.08995 * 109.47019 * 305.00001 * 4 2 1 35 35 H 1.00904 * 110.99913 * 303.95145 * 5 4 2 36 36 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 37 37 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 38 38 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 39 39 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 40 40 H 0.97006 * 120.00437 * 95.00195 * 18 2 1 41 41 H 1.07997 * 120.00394 * 359.97438 * 25 24 21 42 42 H 1.08009 * 119.99509 * 180.27197 * 26 25 24 43 43 H 1.07998 * 120.00700 * 179.83323 * 27 26 25 44 44 H 1.07992 * 120.00516 * 179.97438 * 28 27 26 45 45 H 1.08003 * 120.00391 * 359.97438 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.0305 -1.5147 -2.3768 7 6 5.5318 -1.6031 -2.2813 8 8 6.1067 -1.1390 -1.3194 9 7 6.2357 -2.1979 -3.2648 10 6 7.6015 -2.2788 -3.1777 11 1 8.1134 -1.8656 -2.3212 12 6 8.3272 -2.8925 -4.1914 13 7 7.7042 -3.3958 -5.2333 14 14 10.1881 -3.0021 -4.0732 15 1 10.5627 -3.7618 -2.8534 16 1 10.7202 -3.6983 -5.2721 17 1 10.7610 -1.6341 -3.9996 18 7 2.0183 -0.6906 1.1961 19 6 2.1470 -0.0183 2.3571 20 8 1.8589 1.1586 2.4115 21 6 2.6489 -0.7288 3.5877 22 1 2.6014 -1.8063 3.4299 23 9 3.9730 -0.3518 3.8365 24 6 1.7900 -0.3557 4.7685 25 6 1.7775 0.9472 5.2298 26 6 0.9864 1.2903 6.3103 27 6 0.2147 0.3285 6.9350 28 6 0.2311 -0.9757 6.4769 29 6 1.0190 -1.3178 5.3937 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -0.1583 -2.1369 34 1 1.6055 -1.7197 -1.2952 35 1 3.9280 0.0827 -1.0824 36 1 3.6097 -2.5188 -2.4310 37 1 3.7559 -0.9569 -3.2721 38 1 5.7759 -2.5694 -4.0339 39 1 8.2108 -3.8239 -5.9412 40 1 2.2491 -1.6318 1.1526 41 1 2.3836 1.6978 4.7444 42 1 0.9733 2.3093 6.6680 43 1 -0.4014 0.5959 7.7808 44 1 -0.3714 -1.7272 6.9651 45 1 1.0318 -2.3367 5.0358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268663447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:44 Heat of formation + Delta-G solvation = -120.160923 kcal Electronic energy + Delta-G solvation = -28209.643253 eV Core-core repulsion = 23947.207167 eV Total energy + Delta-G solvation = -4262.436086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.02455 -41.01300 -40.15841 -39.81106 -37.82166 -36.04307 -35.17668 -33.55601 -33.25000 -32.03146 -31.83099 -28.97234 -28.19369 -26.69598 -24.67388 -23.62917 -23.37864 -22.05089 -21.53077 -21.03909 -19.90658 -18.83820 -18.34218 -17.99272 -17.56594 -17.23225 -16.81967 -16.56041 -16.32179 -16.06790 -15.79330 -15.64465 -15.35758 -15.28214 -15.02307 -14.90655 -14.59608 -14.32822 -14.08408 -13.75926 -13.68202 -13.51778 -13.33716 -13.11323 -13.06782 -12.99700 -12.80161 -12.70345 -12.43390 -12.13088 -12.07302 -11.93027 -11.86696 -11.50458 -10.91981 -10.36225 -10.12893 -10.01274 -9.86383 -9.84971 -9.36145 -8.46801 -5.95205 0.23021 0.46207 1.35523 1.39322 1.41398 1.51976 1.97545 2.06509 2.28897 2.80014 2.88720 3.20638 3.29192 3.45410 3.58085 3.60828 3.80020 3.99665 4.12793 4.14631 4.22374 4.27230 4.31702 4.37311 4.52555 4.56599 4.59464 4.64509 4.68064 4.75047 4.77123 4.94463 5.01803 5.11242 5.26280 5.40656 5.44332 5.47876 5.54803 5.56719 5.86440 6.02851 6.08654 6.28796 6.42411 6.60659 7.07570 7.13126 7.57105 8.13139 8.70137 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017489 B = 0.002107 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.645444 B =13282.877287 C =14336.591355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.062 0.938 4 C 0.054 3.946 5 N -0.681 5.681 6 C 0.067 3.933 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.274 1.274 18 N -0.687 5.687 19 C 0.495 3.505 20 O -0.561 6.561 21 C 0.124 3.876 22 H 0.142 0.858 23 F -0.202 7.202 24 C -0.144 4.144 25 C -0.096 4.096 26 C -0.137 4.137 27 C -0.108 4.108 28 C -0.127 4.127 29 C -0.098 4.098 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.338 0.662 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.416 0.584 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.757 1.207 16.120 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.075 4.075 5 N -0.312 5.312 6 C -0.065 4.065 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.210 5.210 10 C -0.464 4.464 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.559 5.559 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.194 1.194 17 H -0.199 1.199 18 N -0.338 5.338 19 C 0.278 3.722 20 O -0.439 6.439 21 C 0.085 3.915 22 H 0.159 0.841 23 F -0.183 7.183 24 C -0.145 4.145 25 C -0.114 4.114 26 C -0.155 4.155 27 C -0.126 4.126 28 C -0.145 4.145 29 C -0.116 4.116 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.156 0.844 36 H 0.131 0.869 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.254 0.746 41 H 0.123 0.877 42 H 0.154 0.846 43 H 0.169 0.831 44 H 0.174 0.826 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.485 1.678 16.959 27.423 hybrid contribution 1.299 0.432 -1.299 1.887 sum -20.186 2.110 15.660 25.635 Atomic orbital electron populations 1.22042 0.92714 1.03534 1.02633 1.21050 0.95155 0.96258 0.83637 0.91983 1.22397 0.86758 1.02368 0.95963 1.60092 1.05440 1.26248 1.39465 1.21545 0.90153 1.01933 0.92910 1.20990 0.90792 0.82439 0.83506 1.90515 1.72912 1.53067 1.34677 1.41918 1.06765 1.51775 1.20567 1.19594 0.83200 1.36992 1.06589 0.90587 1.26004 1.04774 0.95854 0.94586 1.69658 1.38259 1.38441 1.09579 0.85020 0.77005 0.78536 0.77975 1.19768 1.19380 1.19916 1.45861 1.64799 1.14890 1.08268 1.20988 0.78195 0.87402 0.85585 1.90679 1.50809 1.17086 1.85359 1.20510 0.77162 1.02061 0.91776 0.84083 1.92895 1.36623 1.93654 1.95114 1.19875 1.01242 0.95547 0.97837 1.21102 0.98356 0.95717 0.96252 1.21403 0.97182 1.00984 0.95925 1.21628 0.97931 0.93216 0.99807 1.21524 0.99210 0.97247 0.96524 1.21343 0.95116 0.99466 0.95657 0.93641 0.89897 0.90277 0.91926 0.87943 0.84374 0.86939 0.91486 0.76883 0.91292 0.74639 0.87738 0.84585 0.83133 0.82598 0.82840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.48 71.98 0.68 -1.63 16 2 C 0.14 2.90 2.81 44.99 0.13 3.03 16 3 H 0.06 1.60 7.58 -2.39 -0.02 1.58 16 4 C 0.05 1.01 5.24 86.31 0.45 1.46 16 5 N -0.68 -19.47 5.85 -517.92 -3.03 -22.50 16 6 C 0.07 2.09 6.17 85.56 0.53 2.62 16 7 C 0.44 20.25 7.82 87.66 0.69 20.93 16 8 O -0.63 -34.70 15.78 -3.06 -0.05 -34.75 16 9 N -0.57 -28.95 5.29 -306.99 -1.62 -30.57 16 10 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 11 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 14 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 N -0.69 -14.70 4.80 -442.53 -2.12 -16.83 16 19 C 0.49 13.13 7.13 87.66 0.62 13.75 16 20 O -0.56 -18.80 14.88 -3.05 -0.05 -18.85 16 21 C 0.12 2.87 4.01 29.10 0.12 2.99 16 22 H 0.14 2.12 7.74 -2.39 -0.02 2.10 16 23 F -0.20 -6.19 16.91 44.97 0.76 -5.43 16 24 C -0.14 -3.18 5.00 -19.87 -0.10 -3.28 16 25 C -0.10 -2.36 8.56 22.27 0.19 -2.17 16 26 C -0.14 -2.60 10.05 22.27 0.22 -2.37 16 27 C -0.11 -1.54 10.05 22.27 0.22 -1.31 16 28 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 29 C -0.10 -1.52 9.67 22.27 0.22 -1.31 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.34 11.27 8.43 -89.69 -0.76 10.51 16 36 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 39 H 0.28 13.94 8.31 -92.71 -0.77 13.16 16 40 H 0.42 7.35 8.50 -92.70 -0.79 6.57 16 41 H 0.10 3.03 7.43 -2.91 -0.02 3.01 16 42 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 44 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 45 H 0.15 1.43 7.95 -2.91 -0.02 1.41 16 Total: -1.00 -77.20 390.81 0.44 -76.76 By element: Atomic # 1 Polarization: 44.22 SS G_CDS: -1.23 Total: 42.98 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 5.47 Total: 12.93 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -6.49 Total: -118.72 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.09 Total: -53.60 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.76 Total: -5.43 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -77.20 0.44 -76.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268663447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.405 kcal (2) G-P(sol) polarization free energy of solvation -77.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds