Wall clock time and date at job start Sat Apr 11 2020 05:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21297 * 120.00046 * 2 1 4 4 N 1.34778 * 120.00298 * 179.97438 * 2 1 3 5 5 C 1.40065 * 119.99853 * 184.99940 * 4 2 1 6 6 C 1.39040 * 119.96381 * 321.43379 * 5 4 2 7 7 C 1.38112 * 120.26955 * 179.97438 * 6 5 4 8 8 C 1.38336 * 120.19125 * 359.97438 * 7 6 5 9 9 F 1.35107 * 120.03697 * 179.97438 * 8 7 6 10 10 C 1.39808 * 119.92694 * 359.97438 * 8 7 6 11 11 C 1.47704 * 120.13525 * 180.02562 * 10 8 7 12 12 O 1.21575 * 120.00098 * 359.73004 * 11 10 8 13 13 N 1.34776 * 120.00026 * 179.97438 * 11 10 8 14 14 C 1.46501 * 120.00105 * 179.72771 * 13 11 10 15 15 H 1.08999 * 109.47063 * 34.99935 * 14 13 11 16 16 C 1.53006 * 109.47058 * 275.00409 * 14 13 11 17 17 C 1.52999 * 109.47190 * 155.00273 * 14 13 11 18 18 N 1.46496 * 109.47097 * 304.99841 * 17 14 13 19 19 C 1.46495 * 120.00222 * 270.00053 * 18 17 14 20 20 C 1.36940 * 119.99583 * 89.99885 * 18 17 14 21 21 H 1.08003 * 120.00061 * 20.77172 * 20 18 17 22 22 C 1.38813 * 119.99489 * 200.76101 * 20 18 17 23 23 N 1.31613 * 120.00498 * 14.97139 * 22 20 18 24 24 Si 1.86806 * 119.99663 * 194.96927 * 22 20 18 25 25 H 1.48500 * 109.47369 * 84.98828 * 24 22 20 26 26 H 1.48502 * 109.47031 * 204.99440 * 24 22 20 27 27 H 1.48508 * 109.47051 * 324.98728 * 24 22 20 28 28 C 1.38483 * 119.95994 * 141.67080 * 5 4 2 29 29 H 1.08998 * 109.47446 * 240.00034 * 1 2 3 30 30 H 1.08995 * 109.47644 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46799 * 120.00631 * 1 2 3 32 32 H 0.97000 * 120.00289 * 5.00381 * 4 2 1 33 33 H 1.07996 * 119.86649 * 359.97438 * 6 5 4 34 34 H 1.07993 * 119.90389 * 179.97438 * 7 6 5 35 35 H 0.97003 * 120.00268 * 359.73446 * 13 11 10 36 36 H 1.08999 * 109.46796 * 299.99689 * 16 14 13 37 37 H 1.09004 * 109.46918 * 59.99893 * 16 14 13 38 38 H 1.09002 * 109.47170 * 179.97438 * 16 14 13 39 39 H 1.09005 * 109.47015 * 65.00219 * 17 14 13 40 40 H 1.09004 * 109.46774 * 185.00055 * 17 14 13 41 41 H 1.09002 * 109.47200 * 94.83272 * 19 18 17 42 42 H 1.08999 * 109.46983 * 214.83812 * 19 18 17 43 43 H 1.09003 * 109.47244 * 334.83681 * 19 18 17 44 44 H 0.96999 * 120.00352 * 180.02562 * 23 22 20 45 45 H 1.08006 * 120.09707 * 0.04213 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5775 -1.1693 0.1062 6 6 4.3250 -0.1970 -0.5488 7 6 5.7025 -0.1929 -0.4485 8 6 6.3480 -1.1565 0.3054 9 9 7.6957 -1.1498 0.4010 10 6 5.6043 -2.1373 0.9684 11 6 6.2887 -3.1681 1.7751 12 8 7.5015 -3.1677 1.8597 13 7 5.5691 -4.1120 2.4135 14 6 6.2483 -5.1379 3.2088 15 1 7.1281 -4.7051 3.6849 16 6 6.6765 -6.2896 2.2970 17 6 5.2945 -5.6652 4.2827 18 7 4.7913 -4.5450 5.0814 19 6 5.5147 -4.1178 6.2816 20 6 3.6446 -3.8972 4.7062 21 1 2.9376 -4.3860 4.0523 22 6 3.3911 -2.6124 5.1665 23 7 4.3588 -1.9049 5.7098 24 14 1.6761 -1.8874 5.0148 25 1 0.8543 -2.3128 6.1763 26 1 1.7658 -0.4054 4.9880 27 1 1.0449 -2.3678 3.7594 28 6 4.2126 -2.1428 0.8591 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5140 -0.8900 32 1 1.6987 -2.0057 -0.0724 33 1 3.8265 0.5580 -1.1385 34 1 6.2773 0.5648 -0.9601 35 1 4.6014 -4.1122 2.3463 36 1 5.7967 -6.7223 1.8208 37 1 7.3560 -5.9138 1.5319 38 1 7.1822 -7.0527 2.8886 39 1 4.4580 -6.1765 3.8063 40 1 5.8261 -6.3630 4.9297 41 1 6.1878 -3.2988 6.0278 42 1 4.8022 -3.7824 7.0352 43 1 6.0925 -4.9544 6.6746 44 1 4.1816 -1.0073 6.0318 45 1 3.6326 -2.9009 1.3644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268759883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:02:11 Heat of formation + Delta-G solvation = -62.957117 kcal Electronic energy + Delta-G solvation = -30471.997512 eV Core-core repulsion = 26212.041969 eV Total energy + Delta-G solvation = -4259.955543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.51045 -40.55866 -39.33682 -37.88511 -36.27975 -34.67502 -33.99890 -32.03912 -30.93743 -30.77854 -29.62945 -28.28153 -26.20817 -25.64699 -24.25876 -22.64473 -21.99278 -21.21531 -20.16127 -19.66905 -18.08410 -17.37404 -17.28426 -16.74512 -16.21087 -15.86490 -15.52505 -15.28947 -14.99361 -14.87914 -14.39413 -14.13867 -13.99360 -13.74998 -13.38148 -13.14247 -13.11626 -12.99424 -12.86403 -12.65421 -12.52414 -12.23677 -12.11891 -11.84403 -11.42826 -11.37699 -11.32158 -10.91588 -10.77364 -10.43670 -10.30772 -10.23899 -10.11695 -10.04657 -9.88080 -9.28097 -9.02529 -8.62249 -8.30448 -8.04569 -6.84547 -5.79365 -3.24049 0.91877 1.15413 2.39456 2.90413 3.22243 3.24872 3.31694 3.38000 3.72800 4.04966 4.39192 4.41251 4.52072 4.78046 4.90671 5.01074 5.12300 5.28062 5.30342 5.31821 5.40885 5.46521 5.62216 5.64090 5.80351 5.87207 5.96445 6.11346 6.13608 6.17188 6.20358 6.24099 6.34956 6.42501 6.51928 6.71798 6.86131 6.91056 7.21601 7.24000 7.33635 7.63297 7.75974 7.95693 8.22688 8.30259 8.87963 9.14099 9.79413 10.29481 11.24659 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008742 B = 0.005735 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.017427 B = 4881.096471 C = 6964.903257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.528 6.528 4 N -0.673 5.673 5 C 0.119 3.881 6 C -0.069 4.069 7 C -0.152 4.152 8 C 0.144 3.856 9 F -0.117 7.117 10 C -0.139 4.139 11 C 0.560 3.440 12 O -0.543 6.543 13 N -0.679 5.679 14 C 0.118 3.882 15 H 0.078 0.922 16 C -0.159 4.159 17 C 0.142 3.858 18 N -0.598 5.598 19 C 0.163 3.837 20 C -0.262 4.262 21 H 0.065 0.935 22 C 0.010 3.990 23 N -0.892 5.892 24 Si 0.893 3.107 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.070 4.070 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.413 0.587 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.401 0.599 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.053 0.947 41 H 0.029 0.971 42 H 0.042 0.958 43 H -0.002 1.002 44 H 0.253 0.747 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 -2.704 -13.328 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.403 6.403 4 N -0.319 5.319 5 C 0.025 3.975 6 C -0.090 4.090 7 C -0.171 4.171 8 C 0.123 3.877 9 F -0.095 7.095 10 C -0.143 4.143 11 C 0.345 3.655 12 O -0.422 6.422 13 N -0.329 5.329 14 C 0.010 3.990 15 H 0.096 0.904 16 C -0.218 4.218 17 C 0.014 3.986 18 N -0.320 5.320 19 C 0.018 3.982 20 C -0.391 4.391 21 H 0.083 0.917 22 C -0.190 4.190 23 N -0.535 5.535 24 Si 0.723 3.277 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.091 4.091 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.249 0.751 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.238 0.762 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.064 0.936 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.579 -1.773 -13.107 13.997 hybrid contribution -1.466 0.257 0.121 1.493 sum -6.045 -1.516 -12.986 14.404 Atomic orbital electron populations 1.21933 0.90664 1.06011 1.04719 1.21010 0.90937 0.83097 0.74962 1.90741 1.70552 1.31217 1.47816 1.43512 1.04879 1.10126 1.73381 1.17527 0.82942 0.98097 0.98899 1.21111 0.92437 0.98015 0.97399 1.20967 0.94783 0.99508 1.01891 1.17687 0.77633 0.95190 0.97220 1.91574 1.28082 1.95700 1.94129 1.19963 0.93417 0.98722 1.02229 1.17778 0.86866 0.81030 0.79785 1.90767 1.13346 1.74483 1.63630 1.45589 1.10456 1.28394 1.48463 1.21875 0.97707 0.87420 0.91991 0.90359 1.22159 1.00929 0.98516 1.00243 1.21189 0.94931 0.90894 0.91601 1.43891 1.27254 1.35687 1.25161 1.20793 0.95060 0.94446 0.87890 1.18996 0.95383 0.95530 1.29195 0.91700 1.24936 0.96932 0.95884 1.01254 1.70064 1.29620 1.10000 1.43840 0.86484 0.84899 0.78474 0.77865 1.21461 1.21757 1.20662 1.21051 0.92988 0.99447 0.95583 0.88820 0.88549 0.89031 0.75060 0.83717 0.83977 0.76192 0.93027 0.92863 0.92169 0.93358 0.92839 0.95270 0.93907 0.98375 0.93621 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.32 36.00 0.37 -0.96 16 2 C 0.51 6.30 7.77 -10.99 -0.09 6.21 16 3 O -0.53 -8.64 14.73 5.54 0.08 -8.56 16 4 N -0.67 -7.70 5.33 -9.88 -0.05 -7.75 16 5 C 0.12 1.71 6.23 -83.71 -0.52 1.19 16 6 C -0.07 -0.99 8.67 -39.33 -0.34 -1.33 16 7 C -0.15 -2.23 10.01 -39.59 -0.40 -2.62 16 8 C 0.14 2.55 7.28 -38.96 -0.28 2.27 16 9 F -0.12 -2.28 15.54 2.25 0.03 -2.25 16 10 C -0.14 -2.55 5.88 -104.94 -0.62 -3.17 16 11 C 0.56 11.67 7.73 -12.39 -0.10 11.58 16 12 O -0.54 -12.95 14.99 5.30 0.08 -12.87 16 13 N -0.68 -13.01 4.44 -54.79 -0.24 -13.25 16 14 C 0.12 2.18 2.88 -67.93 -0.20 1.98 16 15 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 16 C -0.16 -2.37 9.48 37.16 0.35 -2.02 16 17 C 0.14 2.65 5.36 -4.04 -0.02 2.63 16 18 N -0.60 -13.87 2.82 -181.12 -0.51 -14.38 16 19 C 0.16 3.93 9.02 59.84 0.54 4.47 16 20 C -0.26 -6.39 8.02 -15.06 -0.12 -6.52 16 21 H 0.07 1.50 7.86 -52.48 -0.41 1.08 16 22 C 0.01 0.26 5.06 -17.43 -0.09 0.17 16 23 N -0.89 -25.21 10.69 55.49 0.59 -24.62 16 24 Si 0.89 20.42 29.58 -169.99 -5.03 15.39 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 28 C -0.07 -1.10 9.46 -38.98 -0.37 -1.47 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.41 3.24 8.83 -40.82 -0.36 2.88 16 33 H 0.15 1.97 6.47 -52.49 -0.34 1.63 16 34 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.40 7.30 5.43 -40.82 -0.22 7.08 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.83 8.03 -51.93 -0.42 0.42 16 40 H 0.05 0.91 7.86 -51.93 -0.41 0.51 16 41 H 0.03 0.79 7.41 -51.93 -0.38 0.40 16 42 H 0.04 1.10 7.22 -51.93 -0.38 0.73 16 43 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.14 2.08 6.40 -52.48 -0.34 1.75 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -34.19 378.74 -7.36 -41.54 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.15 Total: 8.63 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: -1.87 Total: 12.41 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.21 Total: -60.00 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.16 Total: -21.43 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.25 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.19 -7.36 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268759883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.414 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds