Wall clock time and date at job start Sat Apr 11 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 N 1.46500 * 109.45870 * 178.61223 * 12 11 10 14 14 C 1.34770 * 120.00090 * 204.99554 * 13 12 11 15 15 O 1.21585 * 120.00322 * 0.02562 * 14 13 12 16 16 N 1.34784 * 120.00163 * 180.02562 * 14 13 12 17 17 C 1.47635 * 125.79652 * 0.02562 * 16 14 13 18 18 C 1.54976 * 104.84700 * 203.97663 * 17 16 14 19 19 C 1.55315 * 101.66652 * 323.37176 * 18 17 16 20 20 C 1.46287 * 125.79884 * 179.71816 * 16 14 13 21 21 C 1.53828 * 110.82245 * 57.89792 * 20 16 14 22 22 C 1.54732 * 101.92475 * 254.32906 * 21 20 16 23 23 O 1.45908 * 104.49172 * 333.63390 * 22 21 20 24 24 C 1.34292 * 109.91941 * 30.17897 * 23 22 21 25 25 O 1.20821 * 125.23655 * 159.42492 * 24 23 22 26 26 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 27 27 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 28 28 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58939 * 6.60799 * 10 9 7 30 30 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 31 31 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 32 32 H 1.08990 * 109.49737 * 294.58150 * 11 10 9 33 33 H 1.08996 * 109.46558 * 58.65144 * 12 11 10 34 34 H 0.97004 * 120.00057 * 25.00416 * 13 12 11 35 35 H 1.08992 * 110.36460 * 322.81839 * 17 16 14 36 36 H 1.08996 * 110.36396 * 85.02753 * 17 16 14 37 37 H 1.09001 * 110.98922 * 81.46773 * 18 17 16 38 38 H 1.09002 * 110.98530 * 205.23820 * 18 17 16 39 39 H 1.08996 * 110.75911 * 153.24609 * 19 18 17 40 40 H 1.09003 * 110.75589 * 276.43869 * 19 18 17 41 41 H 1.09000 * 110.93870 * 12.49019 * 21 20 16 42 42 H 1.09000 * 110.94126 * 136.17432 * 21 20 16 43 43 H 1.09002 * 110.42935 * 214.87894 * 22 21 20 44 44 H 1.09003 * 110.53061 * 92.43682 * 22 21 20 45 45 H 1.09004 * 109.49452 * 181.32235 * 26 12 11 46 46 H 1.08997 * 109.50129 * 301.38075 * 26 12 11 47 47 H 1.09000 * 109.47297 * 113.74148 * 27 9 7 48 48 H 1.09005 * 109.70555 * 353.46012 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 7 1.0322 -5.6557 2.9197 14 6 -0.0145 -6.2785 3.4966 15 8 -1.1449 -6.0523 3.1103 16 7 0.1918 -7.1522 4.5020 17 6 1.5037 -7.5208 5.0702 18 6 1.2853 -8.9206 5.6983 19 6 -0.1582 -8.7924 6.2572 20 6 -0.8465 -7.8917 5.2197 21 6 -1.6814 -8.7437 4.2484 22 6 -3.0025 -7.9417 4.1740 23 8 -3.0673 -7.2263 5.4440 24 6 -1.8265 -6.9593 5.8826 25 8 -1.5401 -6.1034 6.6859 26 6 0.4931 -3.3254 2.4085 27 6 0.2252 -2.3429 1.2642 28 1 -0.4849 0.8401 0.0004 29 1 2.7375 -3.5126 -0.7655 30 1 1.0447 -4.0592 -0.8567 31 1 2.3025 -5.6087 0.5645 32 1 2.8996 -4.2596 1.5607 33 1 -0.0311 -5.0435 1.2191 34 1 1.9341 -5.8364 3.2278 35 1 2.2569 -7.5711 4.2841 36 1 1.8013 -6.8027 5.8343 37 1 1.3425 -9.7019 4.9404 38 1 2.0002 -9.1045 6.5003 39 1 -0.6415 -9.7681 6.3065 40 1 -0.1519 -8.3160 7.2376 41 1 -1.2040 -8.7997 3.2702 42 1 -1.8533 -9.7408 4.6540 43 1 -3.8524 -8.6169 4.0738 44 1 -2.9763 -7.2382 3.3419 45 1 -0.3890 -3.3914 3.0454 46 1 1.3414 -2.9764 2.9972 47 1 -0.6770 -2.6412 0.7300 48 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779565389.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:00:44 Heat of formation + Delta-G solvation = -73.267419 kcal Electronic energy + Delta-G solvation = -31066.170620 eV Core-core repulsion = 26929.228294 eV Total energy + Delta-G solvation = -4136.942326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.89699 -39.74015 -38.06757 -37.53039 -37.03823 -34.49923 -32.78464 -31.97702 -31.57804 -29.97626 -29.29437 -28.64215 -25.30947 -24.67399 -23.29215 -22.38929 -22.22156 -22.13589 -20.92844 -19.87003 -19.28957 -18.19391 -17.03188 -16.85716 -16.73120 -16.39416 -16.10302 -15.46096 -15.03634 -14.84313 -14.45454 -14.09473 -13.97000 -13.85289 -13.68861 -13.50695 -13.34780 -13.02766 -12.92718 -12.68997 -12.57470 -12.35196 -12.04797 -11.97802 -11.65817 -11.48426 -11.27836 -11.11716 -10.94811 -10.70487 -10.64201 -10.49549 -10.38374 -10.25106 -10.12904 -10.00801 -9.75933 -9.56787 -8.99775 -8.62127 -8.39692 -6.67359 -5.77255 -3.20505 1.73503 2.55311 3.07925 3.19432 3.38702 3.45957 3.47862 3.62814 3.84579 3.99419 4.07197 4.21550 4.50083 4.50611 4.54794 4.76278 4.96351 5.13462 5.17077 5.25536 5.28316 5.32232 5.36666 5.40423 5.44804 5.47269 5.63574 5.64251 5.66542 5.81368 5.87279 6.07479 6.22334 6.33138 6.43425 6.56248 6.62157 6.65031 6.76601 6.86883 6.93332 7.00113 7.35486 7.40367 7.70165 7.80704 7.92334 8.46210 8.58483 9.22002 9.85390 10.42023 11.31381 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.002852 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.049779 B = 9815.716793 C =10235.987584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.150 3.850 11 C -0.138 4.138 12 C 0.169 3.831 13 N -0.731 5.731 14 C 0.721 3.279 15 O -0.581 6.581 16 N -0.620 5.620 17 C 0.097 3.903 18 C -0.126 4.126 19 C -0.114 4.114 20 C 0.125 3.875 21 C -0.156 4.156 22 C 0.055 3.945 23 O -0.343 6.343 24 C 0.489 3.511 25 O -0.445 6.445 26 C -0.147 4.147 27 C 0.175 3.825 28 H 0.254 0.746 29 H 0.058 0.942 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.391 0.609 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.021 0.979 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.828 -24.233 10.762 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.065 3.935 13 N -0.384 5.384 14 C 0.424 3.576 15 O -0.458 6.458 16 N -0.361 5.361 17 C -0.025 4.025 18 C -0.164 4.164 19 C -0.152 4.152 20 C 0.035 3.965 21 C -0.195 4.195 22 C -0.019 4.019 23 O -0.259 6.259 24 C 0.326 3.674 25 O -0.327 6.327 26 C -0.188 4.188 27 C 0.049 3.951 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.225 0.775 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.126 0.874 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.039 0.961 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.792 -23.328 10.831 25.732 hybrid contribution 0.940 0.775 0.119 1.225 sum 1.733 -22.553 10.950 25.130 Atomic orbital electron populations 1.70032 1.05283 1.25582 1.53521 1.25064 0.95275 0.98453 1.00757 0.86313 0.79148 0.83700 0.77675 1.21386 1.21546 1.20504 1.19147 0.92481 0.84773 1.42164 0.91696 1.44098 1.35873 1.01512 1.50026 1.20820 0.98004 0.86723 0.92216 1.22350 0.96666 0.99711 0.99083 1.20974 0.98681 0.87956 0.85850 1.45540 1.07588 1.46162 1.39093 1.15510 0.85462 0.78041 0.78634 1.90888 1.21480 1.67638 1.65824 1.47397 1.06657 1.45962 1.36072 1.22424 0.85289 0.96401 0.98407 1.22787 0.96068 0.96538 1.00969 1.22615 0.96020 0.99058 0.97512 1.21487 0.89919 0.91825 0.93240 1.23251 0.96024 0.98676 1.01525 1.24306 0.98147 0.95473 0.83947 1.87047 1.29959 1.71005 1.37887 1.22985 0.82801 0.81860 0.79787 1.90687 1.79461 1.30330 1.32182 1.22584 1.00555 0.95175 1.00460 1.20749 0.88630 0.98036 0.87731 0.93560 0.92335 0.96203 0.92664 0.91894 0.89928 0.77533 0.90156 0.90843 0.89975 0.89090 0.88688 0.89439 0.88074 0.88674 0.87693 0.87416 0.92818 0.92775 0.96122 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 11.20 55.49 0.62 -25.96 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.26 -7.03 9.58 -15.06 -0.14 -7.18 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.86 3.00 -172.29 -0.52 -15.38 16 10 C 0.15 3.05 6.51 -3.71 -0.02 3.02 16 11 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 12 C 0.17 2.94 2.42 -67.89 -0.16 2.78 16 13 N -0.73 -10.45 5.04 -58.64 -0.30 -10.75 16 14 C 0.72 11.00 7.93 -86.92 -0.69 10.31 16 15 O -0.58 -10.76 12.96 5.29 0.07 -10.70 16 16 N -0.62 -7.20 2.83 -162.95 -0.46 -7.66 16 17 C 0.10 0.75 6.59 -2.38 -0.02 0.73 16 18 C -0.13 -0.63 7.09 -24.46 -0.17 -0.80 16 19 C -0.11 -0.76 6.05 -25.15 -0.15 -0.91 16 20 C 0.12 1.31 0.84 -132.34 -0.11 1.20 16 21 C -0.16 -1.31 5.97 -25.39 -0.15 -1.46 16 22 C 0.06 0.58 7.28 38.07 0.28 0.86 16 23 O -0.34 -4.90 11.07 -39.06 -0.43 -5.33 16 24 C 0.49 7.28 6.69 35.97 0.24 7.53 16 25 O -0.45 -8.13 17.96 -18.38 -0.33 -8.46 16 26 C -0.15 -3.05 5.65 -26.61 -0.15 -3.20 16 27 C 0.17 4.34 5.30 -3.69 -0.02 4.32 16 28 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 34 H 0.39 4.49 7.10 -40.82 -0.29 4.20 16 35 H 0.08 0.49 7.32 -51.93 -0.38 0.11 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.40 7.32 -51.93 -0.38 0.02 16 40 H 0.09 0.66 7.87 -51.93 -0.41 0.25 16 41 H 0.10 0.90 7.85 -51.93 -0.41 0.49 16 42 H 0.09 0.48 7.31 -51.93 -0.38 0.10 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.11 1.41 6.34 -51.93 -0.33 1.08 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -35.32 373.64 -9.73 -45.05 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.47 Total: 1.94 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: -1.51 Total: 14.81 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.65 Total: -59.76 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.69 Total: -24.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.32 -9.73 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779565389.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.221 kcal (2) G-P(sol) polarization free energy of solvation -35.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds