Wall clock time and date at job start Sat Apr 11 2020 05:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48500 * 109.47204 * 270.00381 * 3 2 1 5 5 H 1.48506 * 109.47202 * 30.00369 * 3 2 1 6 6 H 1.48500 * 109.47167 * 150.00109 * 3 2 1 7 7 C 1.37875 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99442 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00364 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47161 * 175.21287 * 9 7 2 11 11 C 1.46897 * 111.00019 * 75.29675 * 10 9 7 12 12 C 1.53002 * 109.47184 * 199.80361 * 11 10 9 13 13 N 1.46895 * 109.47076 * 175.37295 * 12 11 10 14 14 C 1.47010 * 111.00392 * 293.63515 * 13 12 11 15 15 C 1.53095 * 109.26058 * 177.60699 * 14 13 12 16 16 O 1.43017 * 109.25637 * 56.84919 * 15 14 13 17 17 C 1.43018 * 113.74103 * 301.32750 * 16 15 14 18 18 C 1.47016 * 110.99890 * 169.99916 * 13 12 11 19 19 C 1.46900 * 110.99958 * 199.25094 * 10 9 7 20 20 C 1.50700 * 109.47092 * 66.04476 * 19 10 9 21 21 C 1.35489 * 125.50501 * 95.02506 * 20 19 10 22 22 C 1.39799 * 107.84189 * 179.97438 * 21 20 19 23 23 C 1.37997 * 106.96792 * 0.02562 * 22 21 20 24 24 C 1.46488 * 126.26122 * 179.97438 * 23 22 21 25 25 O 1.21621 * 120.00192 * 0.02562 * 24 23 22 26 26 O 1.34895 * 120.00175 * 180.02562 * 24 23 22 27 27 N 1.34963 * 125.51035 * 274.72074 * 20 19 10 28 28 H 0.96998 * 125.62865 * 359.97438 * 27 20 19 29 29 H 0.96998 * 120.00474 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46686 * 55.21475 * 9 7 2 31 31 H 1.08995 * 109.47176 * 295.21176 * 9 7 2 32 32 H 1.09000 * 109.47087 * 79.80352 * 11 10 9 33 33 H 1.09001 * 109.47196 * 319.80241 * 11 10 9 34 34 H 1.09005 * 109.47026 * 55.37221 * 12 11 10 35 35 H 1.08995 * 109.46952 * 295.37879 * 12 11 10 36 36 H 1.09001 * 109.50795 * 297.54540 * 14 13 12 37 37 H 1.08997 * 109.50708 * 57.67417 * 14 13 12 38 38 H 1.09003 * 109.50549 * 296.91605 * 15 14 13 39 39 H 1.09000 * 109.54377 * 176.80652 * 15 14 13 40 40 H 1.09001 * 109.50827 * 298.73980 * 17 16 15 41 41 H 1.08996 * 109.54512 * 178.62824 * 17 16 15 42 42 H 1.09000 * 109.51115 * 302.32881 * 18 13 12 43 43 H 1.08999 * 109.50741 * 62.41445 * 18 13 12 44 44 H 1.08993 * 109.47185 * 186.04327 * 19 10 9 45 45 H 1.09003 * 109.47195 * 306.04584 * 19 10 9 46 46 H 1.08001 * 126.08222 * 0.04146 * 21 20 19 47 47 H 1.08000 * 126.51858 * 180.02562 * 22 21 20 48 48 H 0.96699 * 117.00712 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5742 0.1140 11 6 3.8481 -3.2948 -1.1569 12 6 3.8883 -4.8020 -0.8966 13 7 3.6248 -5.5224 -2.1494 14 6 2.2485 -5.2905 -2.6111 15 6 2.0359 -6.0089 -3.9462 16 8 2.3256 -7.4001 -3.7846 17 6 3.6582 -7.6625 -3.3365 18 6 3.8871 -6.9607 -1.9952 19 6 5.3977 -2.6010 0.5694 20 6 5.4765 -2.0739 1.9790 21 6 5.4669 -2.8297 3.1035 22 6 5.5567 -1.9673 4.2000 23 6 5.6190 -0.6832 3.6985 24 6 5.7207 0.5496 4.4832 25 8 5.7580 0.4960 5.6977 26 8 5.7729 1.7442 3.8589 27 7 5.5738 -0.7730 2.3252 28 1 5.6048 -0.0250 1.7085 29 1 -0.4851 0.8400 0.0004 30 1 3.8751 -0.6079 0.8429 31 1 3.8745 -0.7560 -0.9309 32 1 4.6602 -3.0206 -1.8302 33 1 2.8937 -3.0300 -1.6120 34 1 3.1286 -5.0639 -0.1601 35 1 4.8721 -5.0792 -0.5180 36 1 1.5466 -5.6788 -1.8730 37 1 2.0842 -4.2211 -2.7431 38 1 2.7006 -5.5837 -4.6982 39 1 1.0007 -5.8873 -4.2649 40 1 4.3700 -7.2853 -4.0707 41 1 3.7967 -8.7366 -3.2136 42 1 4.9190 -7.1106 -1.6775 43 1 3.2121 -7.3756 -1.2467 44 1 5.7686 -3.6255 0.5434 45 1 6.0057 -1.9776 -0.0862 46 1 5.4026 -3.9070 3.1452 47 1 5.5740 -2.2518 5.2417 48 1 5.8393 2.5298 4.4189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:04 Heat of formation + Delta-G solvation = -70.089970 kcal Electronic energy + Delta-G solvation = -29764.218039 eV Core-core repulsion = 25627.413497 eV Total energy + Delta-G solvation = -4136.804542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33293 -39.60820 -39.48874 -37.29278 -36.03900 -35.42264 -32.66220 -31.26638 -31.01430 -30.65193 -29.58950 -27.77180 -26.35946 -24.61815 -24.01071 -22.85784 -21.85394 -20.63541 -20.43441 -20.20450 -19.61913 -18.44414 -17.42950 -16.98867 -16.58765 -16.15439 -15.73456 -15.41850 -15.15901 -15.06876 -14.97199 -14.82942 -14.25643 -14.06499 -13.75742 -13.58035 -13.34457 -13.20998 -12.99243 -12.57971 -12.49878 -12.46933 -12.21418 -11.91257 -11.78491 -11.57643 -11.56752 -11.39298 -11.19759 -10.87171 -10.74333 -10.64664 -10.54402 -10.07499 -9.99508 -9.64909 -9.45538 -8.84033 -8.67304 -8.31968 -8.05979 -7.60781 -6.15235 -4.12666 1.33869 2.76461 2.99116 3.16497 3.19935 3.26022 3.30946 3.38947 3.71977 3.88950 4.29803 4.70883 4.87426 4.96503 5.03573 5.03680 5.13164 5.15331 5.20532 5.28901 5.35351 5.42915 5.47046 5.54190 5.58251 5.65911 5.69401 5.74112 5.76545 5.90492 5.98964 6.00945 6.12918 6.23855 6.34475 6.35655 6.44317 6.61174 6.67012 6.92645 6.99959 7.05369 7.08496 7.13151 7.44200 7.52744 7.68934 7.80620 7.92590 8.52041 8.93766 9.45411 10.97890 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.003354 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.715546 B = 8345.476514 C =10360.347968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.159 3.841 10 N -0.520 5.520 11 C 0.066 3.934 12 C 0.061 3.939 13 N -0.538 5.538 14 C 0.013 3.987 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.109 3.891 20 C 0.098 3.902 21 C -0.199 4.199 22 C -0.089 4.089 23 C -0.059 4.059 24 C 0.557 3.443 25 O -0.516 6.516 26 O -0.521 6.521 27 N -0.517 5.517 28 H 0.421 0.579 29 H 0.264 0.736 30 H 0.027 0.973 31 H -0.014 1.014 32 H 0.032 0.968 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.035 0.965 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.630 -8.079 -2.208 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.543 4.543 8 H 0.099 0.901 9 C 0.032 3.968 10 N -0.244 5.244 11 C -0.062 4.062 12 C -0.067 4.067 13 N -0.264 5.264 14 C -0.115 4.115 15 C -0.013 4.013 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C -0.020 4.020 20 C -0.023 4.023 21 C -0.223 4.223 22 C -0.116 4.116 23 C -0.169 4.169 24 C 0.403 3.597 25 O -0.406 6.406 26 O -0.333 6.333 27 N -0.112 5.112 28 H 0.259 0.741 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.003 0.997 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.112 0.888 45 H 0.053 0.947 46 H 0.164 0.836 47 H 0.166 0.834 48 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 12.353 -8.335 -2.240 15.069 hybrid contribution 0.445 2.339 0.308 2.401 sum 12.797 -5.997 -1.931 14.264 Atomic orbital electron populations 1.69872 1.06036 1.26861 1.50685 1.24882 0.94717 0.98665 0.94908 0.86913 0.80144 0.84480 0.78317 1.20282 1.21057 1.19700 1.20922 0.88346 0.94704 1.50307 0.90099 1.20311 0.97748 0.84087 0.94610 1.61920 1.15003 1.18251 1.29256 1.21970 1.02420 0.91772 0.90010 1.22108 1.00881 0.94291 0.89377 1.62162 1.24492 1.08309 1.31436 1.22861 0.89061 1.02526 0.97008 1.22698 1.01489 0.80934 0.96133 1.87963 1.30567 1.24763 1.87494 1.22628 0.84414 0.99791 0.94395 1.22743 1.01755 0.88675 0.97815 1.20792 0.91909 1.00594 0.88684 1.20416 1.02264 0.82679 0.96937 1.20576 1.11806 0.99568 0.90325 1.21274 1.01351 0.89402 0.99530 1.19103 1.22915 0.92322 0.82583 1.19558 0.72229 0.82335 0.85556 1.90920 1.48075 1.87362 1.14215 1.84626 1.86016 1.17169 1.45492 1.42005 1.54634 1.08276 1.06318 0.74064 0.92575 0.95536 0.99680 0.95014 0.89097 0.93393 0.91357 0.93614 0.88540 0.92410 0.88440 0.92494 0.88822 0.89914 0.93983 0.88752 0.94659 0.83644 0.83389 0.72785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.96 55.43 0.77 -25.89 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 20.73 27.57 -169.99 -4.69 16.04 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.05 6.41 56.52 0.36 -5.69 16 7 C -0.50 -13.53 9.06 -34.44 -0.31 -13.84 16 8 H 0.08 2.39 7.99 -52.48 -0.42 1.97 16 9 C 0.16 3.49 3.68 -4.98 -0.02 3.47 16 10 N -0.52 -9.49 4.35 -237.52 -1.03 -10.52 16 11 C 0.07 1.09 4.85 -3.82 -0.02 1.07 16 12 C 0.06 0.86 5.00 -3.83 -0.02 0.84 16 13 N -0.54 -7.01 4.73 -234.31 -1.11 -8.12 16 14 C 0.01 0.18 5.44 -3.71 -0.02 0.16 16 15 C 0.06 0.77 7.01 37.21 0.26 1.03 16 16 O -0.39 -4.96 10.83 -35.23 -0.38 -5.34 16 17 C 0.06 0.66 7.01 37.21 0.26 0.92 16 18 C 0.02 0.20 5.64 -3.71 -0.02 0.18 16 19 C 0.11 1.59 5.32 -4.98 -0.03 1.57 16 20 C 0.10 1.52 5.90 -82.20 -0.48 1.03 16 21 C -0.20 -2.92 10.71 -39.98 -0.43 -3.35 16 22 C -0.09 -1.35 10.66 -39.09 -0.42 -1.77 16 23 C -0.06 -0.95 7.10 -82.00 -0.58 -1.54 16 24 C 0.56 8.75 8.30 34.05 0.28 9.03 16 25 O -0.52 -9.00 17.67 -19.36 -0.34 -9.34 16 26 O -0.52 -6.74 13.44 -41.03 -0.55 -7.29 16 27 N -0.52 -8.25 5.06 -5.82 -0.03 -8.28 16 28 H 0.42 6.49 8.23 -40.82 -0.34 6.16 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.03 0.59 4.06 -51.93 -0.21 0.38 16 31 H -0.01 -0.32 7.67 -51.93 -0.40 -0.72 16 32 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 33 H 0.09 1.73 5.40 -51.93 -0.28 1.45 16 34 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 35 H 0.07 0.84 6.84 -51.93 -0.36 0.48 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.41 6.30 -51.93 -0.33 1.08 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 1.15 6.71 -51.93 -0.35 0.80 16 45 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 46 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 47 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 48 H 0.41 3.24 9.11 45.56 0.42 3.65 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -32.98 387.29 -9.66 -42.64 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.50 Total: 9.60 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.64 Total: 0.68 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -1.40 Total: -52.82 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.28 Total: -21.98 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.69 Total: 16.04 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.98 -9.66 -42.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.452 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds