Wall clock time and date at job start Sat Apr 11 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86796 * 120.00124 * 2 1 4 4 H 1.48500 * 109.47472 * 274.65637 * 3 2 1 5 5 H 1.48502 * 109.47047 * 34.65992 * 3 2 1 6 6 H 1.48510 * 109.47005 * 154.65446 * 3 2 1 7 7 C 1.39897 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99879 * 162.15916 * 7 2 1 9 9 C 1.41213 * 120.00224 * 342.16304 * 7 2 1 10 10 C 1.40834 * 120.18301 * 155.14717 * 9 7 2 11 11 C 1.36435 * 119.81425 * 180.02562 * 10 9 7 12 12 C 1.39315 * 120.18286 * 359.97438 * 11 10 9 13 13 O 1.35676 * 119.81728 * 179.97438 * 12 11 10 14 14 C 1.42901 * 117.00164 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46945 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47416 * 54.99732 * 15 14 13 17 17 O 1.42901 * 109.47005 * 294.99299 * 15 14 13 18 18 C 1.53003 * 109.46937 * 175.00103 * 15 14 13 19 19 N 1.46894 * 109.47140 * 184.99810 * 18 15 14 20 20 C 1.46902 * 110.99913 * 179.97438 * 19 18 15 21 21 H 1.08993 * 109.47397 * 324.99605 * 20 19 18 22 22 C 1.53006 * 109.46944 * 205.00083 * 20 19 18 23 23 C 1.52997 * 109.46841 * 180.02562 * 22 20 19 24 24 C 1.52990 * 109.47520 * 59.99993 * 23 22 20 25 25 C 1.53006 * 109.47069 * 299.99867 * 24 23 22 26 26 C 1.52990 * 109.47231 * 85.00190 * 20 19 18 27 27 H 1.08999 * 109.47149 * 300.00107 * 26 20 19 28 28 F 1.39900 * 109.47486 * 59.99571 * 26 20 19 29 29 C 1.39312 * 120.36492 * 0.25009 * 12 11 10 30 30 C 1.36440 * 120.18300 * 359.49154 * 29 12 11 31 31 H 0.96996 * 120.00444 * 359.97438 * 1 2 3 32 32 H 1.07996 * 120.09012 * 0.03969 * 10 9 7 33 33 H 1.07995 * 119.90602 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.47041 * 59.99018 * 14 13 12 35 35 H 1.09001 * 109.46962 * 299.99459 * 14 13 12 36 36 H 0.96693 * 114.00563 * 300.00686 * 17 15 14 37 37 H 1.08997 * 109.47413 * 64.99426 * 18 15 14 38 38 H 1.09000 * 109.46449 * 304.99700 * 18 15 14 39 39 H 1.00896 * 111.00104 * 303.95373 * 19 18 15 40 40 H 1.08996 * 109.47143 * 59.99897 * 22 20 19 41 41 H 1.09004 * 109.47133 * 300.00049 * 22 20 19 42 42 H 1.09001 * 109.46686 * 179.97438 * 23 22 20 43 43 H 1.09003 * 109.47348 * 299.99344 * 23 22 20 44 44 H 1.08995 * 109.47875 * 59.99697 * 24 23 22 45 45 H 1.09002 * 109.47632 * 180.02562 * 24 23 22 46 46 H 1.09004 * 109.47133 * 299.99959 * 25 24 23 47 47 H 1.08996 * 109.47143 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.90542 * 179.72437 * 29 12 11 49 49 H 1.08008 * 120.08994 * 180.24983 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3919 2.1033 -1.3954 5 1 1.4929 2.6222 0.7962 6 1 3.5861 1.4136 0.5994 7 6 2.0082 -1.2116 -0.0005 8 1 3.0493 -1.2339 -0.2871 9 6 1.3531 -2.4053 0.3735 10 6 1.8225 -3.6475 -0.0955 11 6 1.1835 -4.7961 0.2702 12 6 0.0699 -4.7426 1.1056 13 8 -0.5602 -5.8894 1.4642 14 6 -1.6961 -5.7645 2.3223 15 6 -2.2695 -7.1526 2.6145 16 1 -1.4855 -7.7913 3.0213 17 8 -2.7707 -7.7252 1.4050 18 6 -3.4068 -7.0310 3.6307 19 7 -3.8776 -8.3721 4.0015 20 6 -4.9718 -8.2944 4.9786 21 1 -4.8024 -7.4508 5.6476 22 6 -5.0214 -9.5889 5.7927 23 6 -6.1615 -9.5082 6.8099 24 6 -7.4891 -9.3175 6.0739 25 6 -7.4395 -8.0229 5.2597 26 6 -6.2997 -8.1033 4.2431 27 1 -6.2643 -7.1812 3.6630 28 9 -6.5172 -9.1862 3.3844 29 6 -0.4037 -3.5176 1.5701 30 6 0.2270 -2.3601 1.2181 31 1 -0.4850 0.8400 0.0004 32 1 2.6861 -3.6907 -0.7426 33 1 1.5425 -5.7495 -0.0882 34 1 -2.4551 -5.1536 1.8337 35 1 -1.3950 -5.2913 3.2569 36 1 -3.4729 -7.2086 0.9867 37 1 -4.2286 -6.4663 3.1904 38 1 -3.0459 -6.5138 4.5197 39 1 -4.1574 -8.8955 3.1856 40 1 -4.0754 -9.7250 6.3167 41 1 -5.1909 -10.4326 5.1237 42 1 -6.1971 -10.4306 7.3896 43 1 -5.9925 -8.6645 7.4790 44 1 -7.6583 -10.1611 5.4048 45 1 -8.3013 -9.2595 6.7986 46 1 -7.2705 -7.1792 5.9288 47 1 -8.3855 -7.8868 4.7358 48 1 -1.2703 -3.4843 2.2138 49 1 -0.1390 -1.4115 1.5824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872218784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:24 Heat of formation + Delta-G solvation = -141.239128 kcal Electronic energy + Delta-G solvation = -28595.811376 eV Core-core repulsion = 24436.001614 eV Total energy + Delta-G solvation = -4159.809762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.05711 -39.23537 -38.60979 -37.51303 -36.12152 -34.80902 -33.35046 -31.20333 -30.79173 -29.66226 -29.31274 -28.30777 -25.29324 -24.35729 -23.13841 -22.20493 -21.94333 -20.94249 -20.36282 -20.11190 -17.43066 -17.32222 -16.92303 -16.63267 -16.54936 -16.05893 -15.77126 -15.39494 -15.16385 -14.62063 -14.43183 -14.17633 -13.97261 -13.92274 -13.81434 -13.58035 -12.97184 -12.80878 -12.70752 -12.53673 -12.40454 -12.15754 -12.02513 -11.89314 -11.77169 -11.53332 -11.45933 -11.13381 -11.05289 -11.01695 -10.85341 -10.72242 -10.69379 -10.59283 -10.01030 -9.93740 -9.79399 -9.37796 -9.02323 -8.73873 -7.66848 -7.02035 -6.74456 -4.26308 2.75486 2.95244 3.06756 3.11104 3.20392 3.43416 3.93857 4.01302 4.08302 4.15344 4.29645 4.38761 4.42589 4.60399 4.63944 4.71143 4.87465 4.88986 4.96130 4.97580 5.02276 5.13470 5.29532 5.33946 5.37599 5.43076 5.50442 5.60742 5.62896 5.64702 5.66653 5.76175 5.87980 5.97373 6.06747 6.08456 6.27802 6.62912 6.71295 6.88132 7.05496 7.05649 7.26631 7.39586 7.54750 7.61719 7.88976 7.99035 8.14285 8.43509 8.63886 8.88951 8.98087 10.20524 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.001827 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.860922 B =15325.099498 C =15982.430061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.195 4.195 11 C -0.112 4.112 12 C -0.010 4.010 13 O -0.318 6.318 14 C 0.040 3.960 15 C 0.112 3.888 16 H 0.115 0.885 17 O -0.550 6.550 18 C 0.029 3.971 19 N -0.676 5.676 20 C 0.065 3.935 21 H 0.093 0.907 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.143 4.143 26 C 0.059 3.941 27 H 0.078 0.922 28 F -0.207 7.207 29 C -0.175 4.175 30 C -0.134 4.134 31 H 0.279 0.721 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.370 0.630 37 H 0.035 0.965 38 H 0.086 0.914 39 H 0.355 0.645 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.092 0.908 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.213 -12.968 12.481 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.215 4.215 11 C -0.131 4.131 12 C -0.053 4.053 13 O -0.233 6.233 14 C -0.037 4.037 15 C 0.053 3.947 16 H 0.133 0.867 17 O -0.354 6.354 18 C -0.101 4.101 19 N -0.308 5.308 20 C -0.046 4.046 21 H 0.111 0.889 22 C -0.146 4.146 23 C -0.159 4.159 24 C -0.159 4.159 25 C -0.181 4.181 26 C 0.021 3.979 27 H 0.096 0.904 28 F -0.188 7.188 29 C -0.194 4.194 30 C -0.154 4.154 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.216 0.784 37 H 0.053 0.947 38 H 0.104 0.896 39 H 0.176 0.824 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.092 0.908 48 H 0.110 0.890 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.407 -13.568 12.989 23.672 hybrid contribution -1.078 1.933 -0.678 2.315 sum -15.485 -11.635 12.311 22.950 Atomic orbital electron populations 1.69837 1.07538 1.29008 1.36351 1.25877 0.94710 1.01234 0.92369 0.86336 0.80758 0.80825 0.79004 1.19636 1.20151 1.18469 1.19466 0.98088 0.91194 1.40528 0.90483 1.17600 0.91871 0.92200 0.89886 1.20609 1.03199 0.92235 1.05428 1.19628 0.95633 0.97725 1.00099 1.18601 0.97664 0.83840 1.05187 1.85867 1.41918 1.30631 1.64921 1.23082 0.89198 0.96856 0.94614 1.21956 0.94804 0.93928 0.84056 0.86676 1.86649 1.57687 1.52070 1.39044 1.22627 0.97150 0.90616 0.99694 1.60434 1.36543 1.15501 1.18281 1.22209 0.87434 1.00349 0.94575 0.88913 1.21476 0.98965 0.96790 0.97407 1.21564 0.94299 1.02187 0.97802 1.21524 0.97857 0.97509 0.99054 1.22082 0.98304 0.99662 0.98101 1.22312 0.97684 0.87267 0.90621 0.90367 1.92797 1.95841 1.58032 1.72156 1.20585 1.01352 0.92961 1.04458 1.20924 0.98542 0.96422 0.99502 0.91047 0.88173 0.88440 0.93005 0.92307 0.78357 0.94697 0.89582 0.82431 0.90598 0.91255 0.91391 0.91815 0.91301 0.91514 0.90127 0.90835 0.88968 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.67 10.98 55.55 0.61 -20.07 16 2 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.29 9.04 -37.83 -0.34 -12.63 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 9 C 0.09 2.32 5.57 -106.81 -0.59 1.73 16 10 C -0.20 -4.85 9.74 -39.25 -0.38 -5.23 16 11 C -0.11 -2.65 9.92 -39.83 -0.40 -3.04 16 12 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 13 O -0.32 -6.53 10.09 -23.58 -0.24 -6.77 16 14 C 0.04 0.61 4.37 37.16 0.16 0.78 16 15 C 0.11 1.41 3.49 -26.73 -0.09 1.32 16 16 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 17 O -0.55 -7.37 12.82 -40.08 -0.51 -7.89 16 18 C 0.03 0.27 5.16 -3.83 -0.02 0.25 16 19 N -0.68 -6.42 6.25 -106.73 -0.67 -7.09 16 20 C 0.07 0.50 2.31 -67.71 -0.16 0.35 16 21 H 0.09 0.66 7.80 -51.93 -0.40 0.25 16 22 C -0.11 -0.81 5.41 -26.73 -0.14 -0.95 16 23 C -0.12 -0.71 5.92 -26.74 -0.16 -0.87 16 24 C -0.12 -0.73 5.80 -26.73 -0.16 -0.88 16 25 C -0.14 -0.87 5.72 -26.75 -0.15 -1.02 16 26 C 0.06 0.45 3.59 -26.76 -0.10 0.35 16 27 H 0.08 0.57 7.45 -51.93 -0.39 0.18 16 28 F -0.21 -2.08 15.33 2.25 0.03 -2.04 16 29 C -0.17 -4.08 8.96 -39.83 -0.36 -4.44 16 30 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 31 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 32 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.05 0.77 7.63 -51.93 -0.40 0.38 16 35 H 0.06 0.86 7.66 -51.93 -0.40 0.47 16 36 H 0.37 3.79 9.04 45.56 0.41 4.20 16 37 H 0.03 0.30 7.44 -51.93 -0.39 -0.09 16 38 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 39 H 0.35 3.72 7.45 -39.29 -0.29 3.42 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.60 7.80 -51.93 -0.41 0.19 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.48 7.80 -51.93 -0.41 0.08 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 1.89 6.27 -52.49 -0.33 1.56 16 49 H 0.12 3.18 6.18 -52.48 -0.32 2.85 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -29.53 391.75 -10.56 -40.09 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -7.09 Total: 11.07 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -3.57 Total: -26.81 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: -0.06 Total: -27.15 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.75 Total: -14.65 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.03 Total: -2.04 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.53 -10.56 -40.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872218784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.147 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds