Wall clock time and date at job start Sat Apr 11 2020 05:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86799 * 120.00086 * 2 1 4 4 H 1.48495 * 109.47037 * 270.00316 * 3 2 1 5 5 H 1.48490 * 109.47009 * 30.00306 * 3 2 1 6 6 H 1.48503 * 109.46747 * 150.00217 * 3 2 1 7 7 C 1.39896 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99566 * 194.99735 * 7 2 1 9 9 C 1.41212 * 120.00349 * 15.00604 * 7 2 1 10 10 C 1.40829 * 120.17879 * 206.26430 * 9 7 2 11 11 C 1.36438 * 119.81047 * 179.97438 * 10 9 7 12 12 C 1.39308 * 120.18875 * 359.97438 * 11 10 9 13 13 O 1.35668 * 119.82325 * 180.02562 * 12 11 10 14 14 C 1.42901 * 117.00417 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47255 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47380 * 305.00333 * 15 14 13 17 17 O 1.42904 * 109.47228 * 64.99987 * 15 14 13 18 18 C 1.52995 * 109.47104 * 184.99686 * 15 14 13 19 19 N 1.46902 * 109.47353 * 174.44729 * 18 15 14 20 20 C 1.46847 * 110.99853 * 159.86190 * 19 18 15 21 21 C 1.53036 * 109.52247 * 185.80466 * 20 19 18 22 22 C 1.53123 * 109.30869 * 300.88334 * 21 20 19 23 23 C 1.53118 * 109.16146 * 57.63848 * 22 21 20 24 24 H 1.08995 * 109.50573 * 62.28491 * 23 22 21 25 25 C 1.53001 * 109.50248 * 182.40544 * 23 22 21 26 26 F 1.39897 * 109.46938 * 184.99852 * 25 23 22 27 27 C 1.46844 * 111.00249 * 284.11849 * 19 18 15 28 28 C 1.39321 * 120.36183 * 0.27461 * 12 11 10 29 29 C 1.36443 * 120.18229 * 359.44534 * 28 12 11 30 30 H 0.96996 * 120.00228 * 359.97438 * 1 2 3 31 31 H 1.08006 * 120.09687 * 359.97438 * 10 9 7 32 32 H 1.08002 * 119.90787 * 180.02562 * 11 10 9 33 33 H 1.08999 * 109.47191 * 59.99767 * 14 13 12 34 34 H 1.09006 * 109.46829 * 299.99755 * 14 13 12 35 35 H 0.96698 * 113.99914 * 59.99390 * 17 15 14 36 36 H 1.09001 * 109.47019 * 54.45184 * 18 15 14 37 37 H 1.08997 * 109.47550 * 294.44866 * 18 15 14 38 38 H 1.09005 * 109.42712 * 65.81045 * 20 19 18 39 39 H 1.08997 * 109.49482 * 305.84436 * 20 19 18 40 40 H 1.08996 * 109.50312 * 180.92560 * 21 20 19 41 41 H 1.08996 * 109.50234 * 60.84550 * 21 20 19 42 42 H 1.09000 * 109.52019 * 177.54495 * 22 21 20 43 43 H 1.09003 * 109.52146 * 297.66485 * 22 21 20 44 44 H 1.09002 * 109.46938 * 304.99871 * 25 23 22 45 45 H 1.09001 * 109.47433 * 64.99517 * 25 23 22 46 46 H 1.09005 * 109.46295 * 54.13664 * 27 19 18 47 47 H 1.09001 * 109.46575 * 294.17762 * 27 19 18 48 48 H 1.07999 * 119.90420 * 179.70316 * 28 12 11 49 49 H 1.07996 * 120.09222 * 180.27332 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4403 2.6525 0.7001 6 1 3.5404 1.4400 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0607 -1.2276 0.2415 9 6 1.3383 -2.4135 -0.3177 10 6 1.8110 -3.6413 0.1847 11 6 1.1576 -4.7980 -0.1261 12 6 0.0256 -4.7669 -0.9374 13 8 -0.6187 -5.9215 -1.2413 14 6 -1.7724 -5.8198 -2.0784 15 6 -2.3592 -7.2138 -2.3098 16 1 -1.5876 -7.8708 -2.7111 17 8 -2.8366 -7.7413 -1.0705 18 6 -3.5179 -7.1207 -3.3045 19 7 -3.9949 -8.4718 -3.6285 20 6 -5.3580 -8.4321 -4.1732 21 6 -5.8748 -9.8600 -4.3629 22 6 -4.9442 -10.6126 -5.3180 23 6 -3.5223 -10.5977 -4.7501 24 1 -3.5072 -11.1186 -3.7928 25 6 -2.5745 -11.2958 -5.7275 26 9 -1.2994 -11.3829 -5.1587 27 6 -3.0734 -9.1483 -4.5502 28 6 -0.4456 -3.5570 -1.4428 29 6 0.1929 -2.3907 -1.1369 30 1 -0.4850 0.8400 0.0004 31 1 2.6882 -3.6672 0.8142 32 1 1.5185 -5.7404 0.2587 33 1 -1.4894 -5.3817 -3.0355 34 1 -2.5172 -5.1873 -1.5953 35 1 -3.5269 -7.2064 -0.6552 36 1 -3.1765 -6.6279 -4.2149 37 1 -4.3308 -6.5447 -2.8626 38 1 -5.3494 -7.9182 -5.1345 39 1 -6.0104 -7.8984 -3.4822 40 1 -6.8803 -9.8304 -4.7825 41 1 -5.8973 -10.3697 -3.3997 42 1 -5.2843 -11.6430 -5.4214 43 1 -4.9530 -10.1264 -6.2936 44 1 -2.9464 -12.2979 -5.9411 45 1 -2.5210 -10.7231 -6.6534 46 1 -2.0666 -9.1343 -4.1325 47 1 -3.0753 -8.6318 -5.5100 48 1 -1.3210 -3.5420 -2.0750 49 1 -0.1761 -1.4532 -1.5258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880236028.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:38 Heat of formation + Delta-G solvation = -130.982793 kcal Electronic energy + Delta-G solvation = -28757.083068 eV Core-core repulsion = 24597.718054 eV Total energy + Delta-G solvation = -4159.365014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -47.84967 -39.71284 -38.82466 -37.25745 -35.98327 -34.18956 -33.30941 -32.09400 -30.35231 -29.61066 -28.93495 -26.69070 -26.21693 -24.68862 -23.52659 -22.12055 -21.65624 -20.82667 -20.36354 -20.13909 -17.35216 -17.13216 -16.67751 -16.58651 -16.07561 -16.03493 -15.83000 -15.29561 -15.20669 -15.04300 -14.68879 -14.15563 -13.93843 -13.87519 -13.82039 -13.62027 -13.32064 -12.96010 -12.69124 -12.39428 -12.21023 -12.02287 -11.90977 -11.72050 -11.54025 -11.42568 -11.32982 -11.12762 -11.00436 -10.99710 -10.93596 -10.69897 -10.62171 -10.54632 -9.91449 -9.88952 -9.74402 -9.34320 -9.03186 -8.54486 -7.64747 -6.97664 -6.69841 -4.25172 2.77458 2.97415 3.08749 3.12424 3.21859 3.32837 3.96043 3.98830 4.14764 4.33278 4.35969 4.49971 4.62844 4.64429 4.65566 4.78204 4.88994 4.98940 5.02661 5.07282 5.16546 5.17055 5.25359 5.31516 5.35618 5.40059 5.44567 5.53462 5.60612 5.65596 5.68701 5.75166 5.79780 5.99277 6.07869 6.10892 6.30102 6.70239 6.76996 6.80329 6.90091 7.08138 7.29650 7.42135 7.57296 7.81850 7.91383 8.01549 8.16849 8.46130 8.66501 8.91731 9.00303 10.25101 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.001938 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.934695 B =14446.374489 C =14976.069690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.085 3.915 10 C -0.193 4.193 11 C -0.114 4.114 12 C -0.006 4.006 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.119 3.881 16 H 0.104 0.896 17 O -0.539 6.539 18 C 0.027 3.973 19 N -0.526 5.526 20 C 0.054 3.946 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.118 4.118 24 H 0.094 0.906 25 C 0.067 3.933 26 F -0.215 7.215 27 C 0.058 3.942 28 C -0.177 4.177 29 C -0.131 4.131 30 H 0.278 0.722 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.369 0.631 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.031 0.969 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.034 0.966 48 H 0.092 0.908 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.133 -16.360 -12.173 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.083 3.917 10 C -0.213 4.213 11 C -0.133 4.133 12 C -0.049 4.049 13 O -0.233 6.233 14 C -0.039 4.039 15 C 0.058 3.942 16 H 0.121 0.879 17 O -0.343 6.343 18 C -0.101 4.101 19 N -0.250 5.250 20 C -0.073 4.073 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.137 4.137 24 H 0.112 0.888 25 C 0.011 3.989 26 F -0.196 7.196 27 C -0.070 4.070 28 C -0.196 4.196 29 C -0.150 4.150 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.215 0.785 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.052 0.948 48 H 0.111 0.889 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.828 -17.109 -11.783 24.416 hybrid contribution -0.186 2.071 -0.785 2.222 sum -13.015 -15.039 -12.568 23.527 Atomic orbital electron populations 1.69822 1.07442 1.28894 1.37030 1.25869 0.94770 1.01171 0.92498 0.86299 0.80426 0.80716 0.79165 1.19443 1.20430 1.18689 1.19471 0.97073 0.90858 1.41914 0.90531 1.17607 0.92003 0.92237 0.89844 1.20632 1.02826 0.92399 1.05396 1.19633 0.95299 0.97723 1.00647 1.18623 0.97072 0.83867 1.05378 1.85872 1.40262 1.30663 1.66503 1.23131 0.88793 0.97172 0.94833 1.21832 0.94113 0.93591 0.84619 0.87861 1.86645 1.59002 1.52862 1.35769 1.22725 0.98655 0.89712 0.99024 1.61694 1.01798 1.17655 1.43843 1.22133 0.89907 0.97199 0.98101 1.21550 0.98102 0.95300 1.00325 1.21548 0.93926 1.00920 0.98802 1.21811 0.94856 0.96683 1.00372 0.88798 1.22029 0.78901 1.01831 0.96123 1.92794 1.42020 1.97736 1.87053 1.22165 0.97237 0.93288 0.94313 1.20606 1.01394 0.93114 1.04459 1.20963 0.98231 0.96287 0.99566 0.91097 0.88163 0.88421 0.92629 0.92832 0.78500 0.93405 0.90068 0.95036 0.90546 0.91288 0.90714 0.91368 0.91954 0.90613 0.90996 0.89816 0.94796 0.88950 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.98 10.90 55.55 0.61 -20.37 16 2 C 0.07 1.84 5.18 -17.34 -0.09 1.75 16 3 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.39 9.05 -37.83 -0.34 -12.73 16 8 H 0.08 1.97 7.89 -52.48 -0.41 1.56 16 9 C 0.09 2.30 5.57 -106.81 -0.59 1.71 16 10 C -0.19 -4.84 9.74 -39.25 -0.38 -5.22 16 11 C -0.11 -2.73 9.92 -39.83 -0.40 -3.13 16 12 C -0.01 -0.14 6.71 -38.78 -0.26 -0.41 16 13 O -0.32 -6.66 10.09 -23.55 -0.24 -6.90 16 14 C 0.04 0.60 4.36 37.16 0.16 0.77 16 15 C 0.12 1.58 3.34 -26.73 -0.09 1.49 16 16 H 0.10 1.50 6.69 -51.93 -0.35 1.15 16 17 O -0.54 -7.79 13.26 -40.08 -0.53 -8.32 16 18 C 0.03 0.28 4.64 -3.83 -0.02 0.26 16 19 N -0.53 -5.15 4.54 -234.67 -1.06 -6.21 16 20 C 0.05 0.42 5.43 -3.83 -0.02 0.40 16 21 C -0.11 -0.74 6.09 -26.65 -0.16 -0.91 16 22 C -0.11 -0.67 5.29 -26.61 -0.14 -0.82 16 23 C -0.12 -0.92 2.65 -90.54 -0.24 -1.16 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 25 C 0.07 0.47 6.91 37.16 0.26 0.73 16 26 F -0.21 -2.33 17.06 2.25 0.04 -2.29 16 27 C 0.06 0.55 4.48 -3.84 -0.02 0.53 16 28 C -0.18 -4.18 8.97 -39.83 -0.36 -4.54 16 29 C -0.13 -3.43 8.63 -39.25 -0.34 -3.76 16 30 H 0.28 6.60 8.30 -40.82 -0.34 6.27 16 31 H 0.10 2.33 8.06 -52.48 -0.42 1.91 16 32 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.06 0.85 7.64 -51.93 -0.40 0.45 16 34 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 35 H 0.37 4.11 9.05 45.56 0.41 4.52 16 36 H 0.05 0.47 8.00 -51.93 -0.42 0.05 16 37 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.94 6.47 -51.93 -0.34 0.60 16 47 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.09 1.92 6.27 -52.49 -0.33 1.59 16 49 H 0.12 3.25 6.17 -52.49 -0.32 2.93 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -30.66 392.95 -10.48 -41.14 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -7.15 Total: 8.23 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -3.03 Total: -25.03 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: -0.46 Total: -26.59 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.77 Total: -15.22 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.66 -10.48 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880236028.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.843 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds