Wall clock time and date at job start Sat Apr 11 2020 05:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86802 * 119.99839 * 2 1 4 4 H 1.48504 * 109.46837 * 240.00084 * 3 2 1 5 5 H 1.48496 * 109.47033 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46960 * 120.00350 * 3 2 1 7 7 C 1.39886 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00005 * 197.94067 * 7 2 1 9 9 C 1.41214 * 120.00399 * 17.93643 * 7 2 1 10 10 C 1.40826 * 120.18455 * 204.55679 * 9 7 2 11 11 C 1.36430 * 119.81657 * 179.97438 * 10 9 7 12 12 C 1.39314 * 120.18343 * 0.02562 * 11 10 9 13 13 O 1.35676 * 119.82034 * 180.02562 * 12 11 10 14 14 C 1.42898 * 117.00001 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.46753 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.47029 * 54.99938 * 15 14 13 17 17 O 1.42903 * 109.47227 * 294.99691 * 15 14 13 18 18 C 1.53003 * 109.46834 * 174.99939 * 15 14 13 19 19 N 1.46904 * 109.46942 * 184.99938 * 18 15 14 20 20 C 1.46843 * 111.00075 * 66.04750 * 19 18 15 21 21 C 1.53035 * 109.52594 * 174.16417 * 20 19 18 22 22 C 1.53113 * 109.27981 * 59.17415 * 21 20 19 23 23 C 1.53124 * 109.16351 * 302.34794 * 22 21 20 24 24 H 1.09001 * 109.50058 * 297.71675 * 23 22 21 25 25 C 1.52992 * 109.50424 * 177.59695 * 23 22 21 26 26 F 1.39897 * 109.47337 * 65.00212 * 25 23 22 27 27 C 1.46843 * 111.00006 * 301.83561 * 19 18 15 28 28 C 1.39312 * 120.36342 * 0.26866 * 12 11 10 29 29 C 1.36430 * 120.18482 * 359.45322 * 28 12 11 30 30 H 0.96996 * 120.00201 * 359.97438 * 1 2 3 31 31 H 1.08007 * 120.09429 * 0.02562 * 10 9 7 32 32 H 1.08004 * 119.91443 * 179.97438 * 11 10 9 33 33 H 1.08993 * 109.47403 * 60.00030 * 14 13 12 34 34 H 1.08995 * 109.47189 * 299.99245 * 14 13 12 35 35 H 0.96701 * 114.00029 * 300.00245 * 17 15 14 36 36 H 1.08993 * 109.47192 * 64.99906 * 18 15 14 37 37 H 1.08997 * 109.47173 * 304.99596 * 18 15 14 38 38 H 1.09005 * 109.46241 * 294.17266 * 20 19 18 39 39 H 1.08995 * 109.46474 * 54.15241 * 20 19 18 40 40 H 1.08995 * 109.50882 * 179.11942 * 21 20 19 41 41 H 1.09001 * 109.49949 * 299.23421 * 21 20 19 42 42 H 1.08992 * 109.52463 * 62.25670 * 22 21 20 43 43 H 1.09001 * 109.52305 * 182.44710 * 22 21 20 44 44 H 1.09006 * 109.47382 * 185.00227 * 25 23 22 45 45 H 1.09000 * 109.47254 * 304.99998 * 25 23 22 46 46 H 1.09004 * 109.46456 * 305.85417 * 27 19 18 47 47 H 1.08997 * 109.46563 * 65.82090 * 27 19 18 48 48 H 1.08004 * 119.90313 * 179.70436 * 28 12 11 49 49 H 1.07999 * 120.10010 * 180.27404 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6964 -1.2126 5 1 1.2777 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0082 -1.2114 -0.0005 8 1 3.0488 -1.2343 0.2875 9 6 1.3537 -2.4046 -0.3777 10 6 1.8262 -3.6480 0.0848 11 6 1.1878 -4.7960 -0.2839 12 6 0.0718 -4.7406 -1.1158 13 8 -0.5578 -5.8868 -1.4774 14 6 -1.6962 -5.7599 -2.3317 15 6 -2.2677 -7.1477 -2.6291 16 1 -2.4828 -7.6606 -1.6916 17 8 -1.3151 -7.9046 -3.3786 18 6 -3.5574 -7.0051 -3.4399 19 7 -4.1695 -8.3279 -3.6231 20 6 -4.6227 -8.8802 -2.3402 21 6 -5.3819 -10.1862 -2.5851 22 6 -4.4594 -11.1820 -3.2935 23 6 -3.9630 -10.5633 -4.6032 24 1 -4.8117 -10.3721 -5.2599 25 6 -2.9931 -11.5280 -5.2884 26 9 -3.6774 -12.6889 -5.6640 27 6 -3.2449 -9.2465 -4.2996 28 6 -0.3985 -3.5151 -1.5826 29 6 0.2251 -2.3575 -1.2188 30 1 -0.4850 0.8400 0.0004 31 1 2.6911 -3.6927 0.7301 32 1 1.5491 -5.7505 0.0695 33 1 -1.3986 -5.2823 -3.2651 34 1 -2.4548 -5.1524 -1.8383 35 1 -1.0763 -7.5066 -4.2269 36 1 -3.3283 -6.5728 -4.4139 37 1 -4.2511 -6.3543 -2.9077 38 1 -3.7596 -9.0759 -1.7038 39 1 -5.2813 -8.1641 -1.8488 40 1 -5.7047 -10.6040 -1.6316 41 1 -6.2529 -9.9890 -3.2101 42 1 -3.6079 -11.4093 -2.6523 43 1 -5.0092 -12.0982 -3.5088 44 1 -2.5721 -11.0519 -6.1741 45 1 -2.1899 -11.7867 -4.5985 46 1 -2.9027 -8.7963 -5.2315 47 1 -2.3883 -9.4403 -3.6542 48 1 -1.2615 -3.4812 -2.2311 49 1 -0.1433 -1.4079 -1.5779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880236029.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:41 Heat of formation + Delta-G solvation = -128.138578 kcal Electronic energy + Delta-G solvation = -28966.686183 eV Core-core repulsion = 24807.444503 eV Total energy + Delta-G solvation = -4159.241680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -47.85493 -40.07854 -38.80301 -37.23929 -36.07728 -34.09103 -33.37932 -31.97805 -30.52074 -29.66192 -28.98134 -26.41376 -26.25307 -24.71208 -23.35520 -22.63694 -21.58316 -20.99731 -20.42663 -19.89731 -17.40376 -17.20245 -16.68885 -16.46558 -16.38390 -16.09494 -15.79019 -15.30017 -15.13436 -15.01856 -14.78304 -14.36144 -14.06945 -13.95506 -13.73554 -13.47726 -13.12155 -12.90992 -12.74161 -12.45149 -12.16831 -11.99381 -11.79811 -11.71184 -11.52406 -11.42155 -11.35135 -11.16486 -11.11542 -11.02459 -10.93164 -10.67314 -10.62855 -10.51024 -10.26183 -9.95251 -9.84191 -9.40168 -9.04510 -8.31744 -7.69776 -7.05407 -6.76478 -4.28763 2.74430 2.92794 3.04997 3.07729 3.19386 3.50942 3.81529 3.92098 4.21072 4.29963 4.38128 4.50679 4.57970 4.68195 4.76544 4.85597 4.92916 4.96006 5.00197 5.06354 5.18308 5.28757 5.33633 5.41537 5.51572 5.53466 5.55292 5.59482 5.64017 5.67188 5.72543 5.86344 5.94295 5.94888 6.05849 6.14444 6.24079 6.66411 6.76933 6.81851 6.85288 7.03115 7.24341 7.36471 7.47678 7.52142 7.86422 7.96347 8.11551 8.40483 8.61113 8.86514 8.95414 10.18355 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.029732 B = 0.001860 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.508902 B =15049.499818 C =15336.025009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.196 4.196 11 C -0.112 4.112 12 C -0.011 4.011 13 O -0.320 6.320 14 C 0.041 3.959 15 C 0.074 3.926 16 H 0.105 0.895 17 O -0.548 6.548 18 C 0.027 3.973 19 N -0.528 5.528 20 C 0.047 3.953 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.119 4.119 24 H 0.084 0.916 25 C 0.067 3.933 26 F -0.220 7.220 27 C 0.047 3.953 28 C -0.174 4.174 29 C -0.135 4.135 30 H 0.280 0.720 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.372 0.628 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 -15.649 -8.886 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.131 4.131 12 C -0.055 4.055 13 O -0.236 6.236 14 C -0.037 4.037 15 C 0.014 3.986 16 H 0.123 0.877 17 O -0.354 6.354 18 C -0.102 4.102 19 N -0.250 5.250 20 C -0.081 4.081 21 C -0.152 4.152 22 C -0.155 4.155 23 C -0.138 4.138 24 H 0.103 0.897 25 C 0.011 3.989 26 F -0.201 7.201 27 C -0.080 4.080 28 C -0.193 4.193 29 C -0.154 4.154 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.220 0.780 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.111 0.889 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.504 -16.036 -8.607 21.013 hybrid contribution 0.817 1.432 0.023 1.649 sum -9.687 -14.604 -8.583 19.514 Atomic orbital electron populations 1.69827 1.07534 1.29197 1.36057 1.25880 0.94723 1.01248 0.92356 0.86376 0.80129 0.80297 0.79958 1.18885 1.20416 1.19031 1.19440 0.98122 0.91233 1.40498 0.90501 1.17599 0.91830 0.92176 0.89893 1.20599 1.03217 0.92230 1.05561 1.19614 0.95543 0.97657 1.00285 1.18585 0.97781 0.83853 1.05242 1.85865 1.42056 1.30700 1.64985 1.23098 0.89126 0.96894 0.94564 1.22739 0.88320 0.91652 0.95920 0.87711 1.86608 1.63077 1.49866 1.35838 1.22830 0.94579 0.91817 1.00948 1.62171 1.38634 1.02458 1.21777 1.22188 0.98811 0.96702 0.90429 1.21543 0.98606 0.94425 1.00612 1.21618 0.99666 0.98435 0.95755 1.21825 0.99101 0.95023 0.97886 0.89718 1.21988 0.94224 0.82373 1.00305 1.92750 1.82335 1.51838 1.93162 1.22363 0.94667 0.91235 0.99748 1.20590 1.01481 0.92941 1.04287 1.20937 0.98559 0.96461 0.99439 0.90920 0.88203 0.88562 0.92869 0.92348 0.78037 0.89816 0.89260 0.94165 0.90630 0.91364 0.91155 0.91913 0.91478 0.90713 0.90666 0.91047 0.90173 0.88924 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.51 10.96 55.54 0.61 -19.90 16 2 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 3 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.20 9.04 -37.84 -0.34 -12.54 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 9 C 0.09 2.32 5.57 -106.80 -0.60 1.72 16 10 C -0.20 -4.83 9.74 -39.26 -0.38 -5.22 16 11 C -0.11 -2.62 9.92 -39.83 -0.40 -3.01 16 12 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 13 O -0.32 -6.39 10.09 -23.58 -0.24 -6.63 16 14 C 0.04 0.60 4.37 37.16 0.16 0.76 16 15 C 0.07 0.85 2.96 -26.73 -0.08 0.77 16 16 H 0.11 1.33 6.46 -51.93 -0.34 0.99 16 17 O -0.55 -6.24 9.75 -40.08 -0.39 -6.63 16 18 C 0.03 0.24 5.18 -3.82 -0.02 0.22 16 19 N -0.53 -4.79 4.86 -234.68 -1.14 -5.93 16 20 C 0.05 0.41 5.06 -3.84 -0.02 0.39 16 21 C -0.11 -0.90 6.09 -26.66 -0.16 -1.06 16 22 C -0.12 -0.95 5.18 -26.61 -0.14 -1.09 16 23 C -0.12 -0.95 2.65 -90.54 -0.24 -1.19 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 C 0.07 0.50 6.91 37.15 0.26 0.76 16 26 F -0.22 -2.20 17.09 2.25 0.04 -2.16 16 27 C 0.05 0.40 3.51 -3.84 -0.01 0.39 16 28 C -0.17 -4.01 8.96 -39.83 -0.36 -4.37 16 29 C -0.13 -3.45 8.64 -39.25 -0.34 -3.79 16 30 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 31 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 32 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.05 0.75 7.63 -51.93 -0.40 0.35 16 34 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 35 H 0.37 3.13 9.05 45.56 0.41 3.54 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 38 H 0.04 0.40 6.65 -51.93 -0.35 0.05 16 39 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.55 8.00 -51.93 -0.42 0.13 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 47 H 0.08 0.79 5.58 -51.93 -0.29 0.50 16 48 H 0.09 1.87 6.27 -52.48 -0.33 1.54 16 49 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -29.27 386.31 -10.38 -39.65 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.03 Total: 8.30 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -3.01 Total: -26.01 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: -0.53 Total: -25.83 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.63 Total: -13.26 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.27 -10.38 -39.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880236029.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.493 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds