Wall clock time and date at job start Sat Apr 11 2020 05:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99750 * 2 1 4 4 H 1.48505 * 109.46748 * 270.00364 * 3 2 1 5 5 H 1.48500 * 109.47194 * 29.99696 * 3 2 1 6 6 H 1.48493 * 109.47385 * 150.00128 * 3 2 1 7 7 C 1.37868 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00120 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.88589 * 62.41979 * 9 7 2 11 11 C 1.55157 * 111.04043 * 186.32848 * 9 7 2 12 12 C 1.54327 * 103.02312 * 153.39015 * 11 9 7 13 13 N 1.47026 * 107.26754 * 338.14725 * 12 11 9 14 14 C 1.34772 * 125.65133 * 178.84863 * 13 12 11 15 15 O 1.21590 * 120.00136 * 179.68383 * 14 13 12 16 16 N 1.34783 * 119.99875 * 359.68652 * 14 13 12 17 17 C 1.46499 * 120.00195 * 179.97438 * 16 14 13 18 18 H 1.09008 * 110.85409 * 37.33460 * 17 16 14 19 19 C 1.54628 * 110.97196 * 273.54957 * 17 16 14 20 20 C 1.51275 * 104.19635 * 217.04461 * 19 17 16 21 21 O 1.21281 * 124.94615 * 196.23224 * 20 19 17 22 22 N 1.34424 * 110.11780 * 16.25019 * 20 19 17 23 23 C 1.46500 * 124.35300 * 180.14254 * 22 20 19 24 24 C 1.53000 * 109.46858 * 90.02712 * 23 22 20 25 25 C 1.53009 * 117.49258 * 243.74728 * 24 23 22 26 26 C 1.52997 * 117.49653 * 175.09173 * 24 23 22 27 27 C 1.46768 * 111.29731 * 0.40742 * 22 20 19 28 28 C 1.47428 * 108.69855 * 358.57703 * 13 12 11 29 29 H 0.97001 * 120.00306 * 359.97438 * 1 2 3 30 30 H 0.96693 * 114.00611 * 297.57407 * 10 9 7 31 31 H 1.09003 * 110.71859 * 271.95403 * 11 9 7 32 32 H 1.09002 * 110.71951 * 35.04687 * 11 9 7 33 33 H 1.08993 * 109.99559 * 218.66509 * 12 11 9 34 34 H 1.09009 * 109.77678 * 97.49341 * 12 11 9 35 35 H 0.97001 * 119.99790 * 0.02562 * 16 14 13 36 36 H 1.09002 * 110.48704 * 98.36767 * 19 17 16 37 37 H 1.08996 * 110.59997 * 335.77950 * 19 17 16 38 38 H 1.08996 * 109.46993 * 210.02517 * 23 22 20 39 39 H 1.09000 * 109.47041 * 330.02307 * 23 22 20 40 40 H 1.08994 * 115.55638 * 29.41534 * 24 23 22 41 41 H 1.08993 * 117.50276 * 359.97438 * 25 24 23 42 42 H 1.09002 * 117.49334 * 145.02252 * 25 24 23 43 43 H 1.09001 * 117.50128 * 214.97742 * 26 24 23 44 44 H 1.09005 * 117.50070 * 359.96866 * 26 24 23 45 45 H 1.09003 * 110.24577 * 101.98147 * 27 22 20 46 46 H 1.08999 * 110.24371 * 223.98527 * 27 22 20 47 47 H 1.09005 * 110.36287 * 143.19796 * 28 13 12 48 48 H 1.08999 * 110.36701 * 265.40656 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6316 -1.1831 11 6 2.2191 -3.7011 0.1608 12 6 1.3288 -4.7800 0.8126 13 7 0.2055 -4.0864 1.4598 14 6 -0.8077 -4.6796 2.1215 15 8 -1.6840 -4.0032 2.6245 16 7 -0.8497 -6.0228 2.2256 17 6 -1.9508 -6.6677 2.9453 18 1 -2.8898 -6.1428 2.7689 19 6 -1.6443 -6.7599 4.4581 20 6 -2.2221 -8.0950 4.8730 21 8 -2.4429 -8.4310 6.0172 22 7 -2.4550 -8.8549 3.7889 23 6 -3.0162 -10.2075 3.8326 24 6 -4.5419 -10.1294 3.7480 25 6 -5.3425 -10.6264 4.9536 26 6 -5.3130 -11.4481 3.6624 27 6 -2.0688 -8.1580 2.5564 28 6 0.3747 -2.6342 1.2706 29 1 -0.4851 0.8400 0.0004 30 1 -0.2244 -1.9564 -1.2760 31 1 2.5843 -4.0343 -0.8107 32 1 3.0510 -3.4416 0.8157 33 1 1.9001 -5.3350 1.5567 34 1 0.9534 -5.4599 0.0477 35 1 -0.1504 -6.5624 1.8247 36 1 -2.1337 -5.9484 4.9967 37 1 -0.5687 -6.7387 4.6335 38 1 -2.6349 -10.7864 2.9914 39 1 -2.7282 -10.6904 4.7663 40 1 -4.9393 -9.2773 3.1967 41 1 -4.7823 -11.0093 5.8065 42 1 -6.2667 -10.1014 5.1949 43 1 -6.2179 -11.4635 3.0549 44 1 -4.7334 -12.3712 3.6657 45 1 -1.1098 -8.5310 2.1967 46 1 -2.8357 -8.2889 1.7929 47 1 -0.5930 -2.1565 1.1164 48 1 0.8803 -2.1959 2.1310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890273318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:50 Heat of formation + Delta-G solvation = -75.500438 kcal Electronic energy + Delta-G solvation = -29567.029933 eV Core-core repulsion = 25429.990776 eV Total energy + Delta-G solvation = -4137.039157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85881 -39.57691 -37.74593 -37.53183 -36.48223 -34.30261 -34.12831 -32.24952 -31.38925 -29.90862 -27.91454 -27.68578 -26.82016 -25.00324 -22.92201 -22.68278 -21.67998 -21.31317 -20.09518 -19.70029 -19.36073 -17.72758 -17.18428 -17.03575 -16.79230 -15.83988 -15.61422 -15.28897 -15.12108 -14.92588 -14.48100 -14.46380 -14.11587 -13.84654 -13.68183 -13.44621 -13.15448 -13.05736 -12.86194 -12.76439 -12.13665 -12.00143 -11.97307 -11.85257 -11.68917 -11.46230 -11.37720 -11.05168 -10.86196 -10.81591 -10.64531 -10.48732 -10.41775 -10.22829 -10.05821 -9.70939 -9.39760 -9.05101 -9.00373 -8.71600 -8.39409 -7.76785 -6.29339 -4.39198 2.39674 2.55114 2.99156 3.20281 3.28015 3.30015 3.45601 3.59511 4.09386 4.22282 4.28112 4.34844 4.40893 4.55912 4.62346 4.74290 4.78097 4.94090 4.97702 5.09491 5.18232 5.21634 5.29365 5.35282 5.37692 5.57676 5.58901 5.65436 5.75764 5.76493 5.78853 5.82681 5.95842 6.06319 6.23230 6.46541 6.55965 6.66361 6.82704 6.84503 6.88658 7.18578 7.28627 7.54185 7.72607 7.96112 8.00869 8.43236 8.64800 9.01811 9.27747 9.36106 10.77645 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.002145 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.566771 B =13052.157517 C =13208.951076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.718 3.282 15 O -0.591 6.591 16 N -0.742 5.742 17 C 0.161 3.839 18 H 0.110 0.890 19 C -0.169 4.169 20 C 0.524 3.476 21 O -0.528 6.528 22 N -0.618 5.618 23 C 0.158 3.842 24 C -0.175 4.175 25 C -0.173 4.173 26 C -0.175 4.175 27 C 0.099 3.901 28 C 0.113 3.887 29 H 0.270 0.730 30 H 0.381 0.619 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.395 0.605 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 -20.482 3.501 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.363 5.363 14 C 0.420 3.580 15 O -0.470 6.470 16 N -0.400 5.400 17 C 0.053 3.947 18 H 0.128 0.872 19 C -0.211 4.211 20 C 0.312 3.688 21 O -0.404 6.404 22 N -0.352 5.352 23 C 0.036 3.964 24 C -0.195 4.195 25 C -0.210 4.210 26 C -0.213 4.213 27 C -0.025 4.025 28 C -0.008 4.008 29 H 0.080 0.920 30 H 0.231 0.769 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.995 -20.621 4.426 21.674 hybrid contribution 0.377 1.127 -0.151 1.198 sum -4.619 -19.494 4.275 20.485 Atomic orbital electron populations 1.69713 1.05962 1.27936 1.49378 1.25078 0.95047 0.99765 0.93344 0.86410 0.79779 0.82477 0.78278 1.20419 1.21006 1.19712 1.21443 0.93626 0.90027 1.52558 0.91542 1.19632 0.86638 0.91561 0.81398 1.86096 1.51565 1.57162 1.44334 1.22588 0.97556 0.95174 1.00099 1.21945 0.88290 0.96115 0.95552 1.47953 1.23074 1.09893 1.55331 1.15462 0.81998 0.81094 0.79431 1.90909 1.39492 1.63018 1.53551 1.45020 1.28162 1.05763 1.61013 1.21425 0.92133 0.91379 0.89754 0.87220 1.22896 1.03964 0.96221 0.98017 1.20929 0.76768 0.86615 0.84499 1.90714 1.53162 1.76597 1.19933 1.48229 1.63450 1.16160 1.07385 1.20934 0.90352 0.81960 1.03151 1.22779 0.94251 0.98791 1.03634 1.23034 1.02287 1.03526 0.92127 1.22965 1.02351 0.94674 1.01313 1.22296 1.01663 0.91259 0.87307 1.23166 1.02640 0.75442 0.99589 0.91974 0.76888 0.90770 0.90409 0.93061 0.92575 0.76993 0.87239 0.87384 0.89806 0.89770 0.87442 0.88526 0.88858 0.88642 0.88648 0.90422 0.89321 0.89570 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.34 10.69 55.43 0.59 -22.74 16 2 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 3 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -13.59 8.27 -34.44 -0.28 -13.87 16 8 H 0.07 1.65 7.79 -52.49 -0.41 1.24 16 9 C 0.25 5.75 0.87 -89.62 -0.08 5.67 16 10 O -0.58 -14.27 13.16 -35.23 -0.46 -14.73 16 11 C -0.12 -2.16 6.13 -24.90 -0.15 -2.31 16 12 C 0.10 1.65 6.15 -3.06 -0.02 1.63 16 13 N -0.63 -12.04 3.33 -176.23 -0.59 -12.62 16 14 C 0.72 13.26 8.49 -86.92 -0.74 12.53 16 15 O -0.59 -13.31 16.34 5.29 0.09 -13.22 16 16 N -0.74 -9.41 5.15 -57.08 -0.29 -9.71 16 17 C 0.16 1.76 3.42 -66.30 -0.23 1.53 16 18 H 0.11 1.38 7.72 -51.92 -0.40 0.98 16 19 C -0.17 -1.98 6.59 -26.75 -0.18 -2.16 16 20 C 0.52 6.50 8.02 -10.86 -0.09 6.41 16 21 O -0.53 -8.46 17.59 5.56 0.10 -8.36 16 22 N -0.62 -5.74 2.93 -172.41 -0.51 -6.25 16 23 C 0.16 1.23 6.21 -4.04 -0.03 1.20 16 24 C -0.18 -1.37 6.01 -90.62 -0.54 -1.92 16 25 C -0.17 -1.39 10.18 -26.69 -0.27 -1.66 16 26 C -0.18 -1.11 10.25 -26.69 -0.27 -1.38 16 27 C 0.10 0.75 7.07 -3.12 -0.02 0.73 16 28 C 0.11 2.63 5.38 -2.53 -0.01 2.61 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.38 9.66 7.56 45.56 0.34 10.00 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.40 3.96 7.35 -40.82 -0.30 3.66 16 36 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.11 1.22 8.08 -51.93 -0.42 0.80 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.73 7.66 -51.93 -0.40 0.34 16 40 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.47 7.77 -51.93 -0.40 0.06 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 2.27 7.33 -51.93 -0.38 1.89 16 48 H 0.06 1.40 8.03 -51.93 -0.42 0.98 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -31.60 393.48 -10.15 -41.75 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -6.98 Total: 14.23 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -3.01 Total: 10.74 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.79 Total: -51.32 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.28 Total: -36.32 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.60 -10.15 -41.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890273318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.749 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds