Wall clock time and date at job start Sat Apr 11 2020 05:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99750 * 2 1 4 4 H 1.48505 * 109.46748 * 270.00364 * 3 2 1 5 5 H 1.48500 * 109.47194 * 29.99696 * 3 2 1 6 6 H 1.48493 * 109.47385 * 150.00128 * 3 2 1 7 7 C 1.37868 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00120 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.88589 * 62.41979 * 9 7 2 11 11 C 1.55157 * 111.04043 * 186.32848 * 9 7 2 12 12 C 1.54327 * 103.02312 * 153.39015 * 11 9 7 13 13 N 1.47026 * 107.26754 * 338.14725 * 12 11 9 14 14 C 1.34772 * 125.65133 * 178.84863 * 13 12 11 15 15 O 1.21590 * 120.00136 * 179.68383 * 14 13 12 16 16 N 1.34783 * 119.99875 * 359.68652 * 14 13 12 17 17 C 1.46499 * 120.00195 * 179.97438 * 16 14 13 18 18 H 1.09008 * 110.85409 * 37.33460 * 17 16 14 19 19 C 1.54628 * 110.97196 * 273.54957 * 17 16 14 20 20 C 1.51275 * 104.19635 * 217.04461 * 19 17 16 21 21 O 1.21281 * 124.94615 * 196.23224 * 20 19 17 22 22 N 1.34424 * 110.11780 * 16.25019 * 20 19 17 23 23 C 1.46500 * 124.35300 * 180.14254 * 22 20 19 24 24 C 1.53000 * 109.46858 * 90.02712 * 23 22 20 25 25 C 1.53009 * 117.49258 * 243.74728 * 24 23 22 26 26 C 1.52997 * 117.49653 * 175.09173 * 24 23 22 27 27 C 1.46768 * 111.29731 * 0.40742 * 22 20 19 28 28 C 1.47428 * 108.69855 * 358.57703 * 13 12 11 29 29 H 0.97001 * 120.00306 * 359.97438 * 1 2 3 30 30 H 0.96693 * 114.00611 * 297.57407 * 10 9 7 31 31 H 1.09003 * 110.71859 * 271.95403 * 11 9 7 32 32 H 1.09002 * 110.71951 * 35.04687 * 11 9 7 33 33 H 1.08993 * 109.99559 * 218.66509 * 12 11 9 34 34 H 1.09009 * 109.77678 * 97.49341 * 12 11 9 35 35 H 0.97001 * 119.99790 * 0.02562 * 16 14 13 36 36 H 1.09002 * 110.48704 * 98.36767 * 19 17 16 37 37 H 1.08996 * 110.59997 * 335.77950 * 19 17 16 38 38 H 1.08996 * 109.46993 * 210.02517 * 23 22 20 39 39 H 1.09000 * 109.47041 * 330.02307 * 23 22 20 40 40 H 1.08994 * 115.55638 * 29.41534 * 24 23 22 41 41 H 1.08993 * 117.50276 * 359.97438 * 25 24 23 42 42 H 1.09002 * 117.49334 * 145.02252 * 25 24 23 43 43 H 1.09001 * 117.50128 * 214.97742 * 26 24 23 44 44 H 1.09005 * 117.50070 * 359.96866 * 26 24 23 45 45 H 1.09003 * 110.24577 * 101.98147 * 27 22 20 46 46 H 1.08999 * 110.24371 * 223.98527 * 27 22 20 47 47 H 1.09005 * 110.36287 * 143.19796 * 28 13 12 48 48 H 1.08999 * 110.36701 * 265.40656 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4616 -2.6316 -1.1831 11 6 2.2191 -3.7011 0.1608 12 6 1.3288 -4.7800 0.8126 13 7 0.2055 -4.0864 1.4598 14 6 -0.8077 -4.6796 2.1215 15 8 -1.6840 -4.0032 2.6245 16 7 -0.8497 -6.0228 2.2256 17 6 -1.9508 -6.6677 2.9453 18 1 -2.8898 -6.1428 2.7689 19 6 -1.6443 -6.7599 4.4581 20 6 -2.2221 -8.0950 4.8730 21 8 -2.4429 -8.4310 6.0172 22 7 -2.4550 -8.8549 3.7889 23 6 -3.0162 -10.2075 3.8326 24 6 -4.5419 -10.1294 3.7480 25 6 -5.3425 -10.6264 4.9536 26 6 -5.3130 -11.4481 3.6624 27 6 -2.0688 -8.1580 2.5564 28 6 0.3747 -2.6342 1.2706 29 1 -0.4851 0.8400 0.0004 30 1 -0.2244 -1.9564 -1.2760 31 1 2.5843 -4.0343 -0.8107 32 1 3.0510 -3.4416 0.8157 33 1 1.9001 -5.3350 1.5567 34 1 0.9534 -5.4599 0.0477 35 1 -0.1504 -6.5624 1.8247 36 1 -2.1337 -5.9484 4.9967 37 1 -0.5687 -6.7387 4.6335 38 1 -2.6349 -10.7864 2.9914 39 1 -2.7282 -10.6904 4.7663 40 1 -4.9393 -9.2773 3.1967 41 1 -4.7823 -11.0093 5.8065 42 1 -6.2667 -10.1014 5.1949 43 1 -6.2179 -11.4635 3.0549 44 1 -4.7334 -12.3712 3.6657 45 1 -1.1098 -8.5310 2.1967 46 1 -2.8357 -8.2889 1.7929 47 1 -0.5930 -2.1565 1.1164 48 1 0.8803 -2.1959 2.1310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890273318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:49 Heat of formation + Delta-G solvation = -98.391911 kcal Electronic energy + Delta-G solvation = -29568.022582 eV Core-core repulsion = 25429.990776 eV Total energy + Delta-G solvation = -4138.031806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.84245 -40.95530 -39.12804 -38.34223 -37.59609 -36.00088 -35.23484 -34.20141 -32.51674 -31.32945 -29.49394 -28.58707 -27.74479 -26.69897 -24.33183 -23.26862 -22.68313 -21.99004 -21.42531 -21.24174 -20.38532 -19.24666 -18.79164 -18.03863 -17.80875 -17.10148 -16.80339 -16.60907 -16.40866 -16.20584 -15.95224 -15.38137 -15.21335 -15.04790 -14.80768 -14.63238 -14.56526 -14.33274 -14.06009 -13.68766 -13.49100 -13.46857 -13.28361 -12.85600 -12.82917 -12.65903 -12.49999 -12.38377 -12.31541 -12.26739 -12.20816 -12.03545 -11.46520 -11.33297 -11.17850 -11.13167 -10.83966 -10.63840 -10.29773 -10.20372 -9.81020 -9.30736 -8.22375 -6.38999 1.42266 1.43435 1.45535 1.53782 1.55115 1.95706 2.16602 2.39817 2.87860 3.00275 3.04603 3.31441 3.49973 3.75163 3.78870 3.84830 3.95157 3.98867 4.09673 4.13539 4.23946 4.32897 4.40451 4.46804 4.52149 4.59419 4.68370 4.71315 4.78087 4.79196 4.81486 4.85757 5.01184 5.12484 5.16156 5.19318 5.25030 5.33168 5.41674 5.46911 5.50573 5.51988 5.79397 5.98354 6.08378 6.20545 6.68447 7.03608 7.09562 7.31118 7.38143 7.59548 8.82410 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.002145 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.566771 B =13052.157517 C =13208.951076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.554 4.554 8 H 0.068 0.932 9 C 0.231 3.769 10 O -0.586 6.586 11 C -0.112 4.112 12 C 0.106 3.894 13 N -0.632 5.632 14 C 0.714 3.286 15 O -0.640 6.640 16 N -0.715 5.715 17 C 0.160 3.840 18 H 0.091 0.909 19 C -0.166 4.166 20 C 0.521 3.479 21 O -0.573 6.573 22 N -0.607 5.607 23 C 0.156 3.844 24 C -0.183 4.183 25 C -0.195 4.195 26 C -0.152 4.152 27 C 0.108 3.892 28 C 0.129 3.871 29 H 0.268 0.732 30 H 0.372 0.628 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.415 0.585 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.043 0.957 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 -23.270 2.122 23.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.786 3.214 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.593 4.593 8 H 0.086 0.914 9 C 0.191 3.809 10 O -0.394 6.394 11 C -0.150 4.150 12 C -0.015 4.015 13 N -0.368 5.368 14 C 0.416 3.584 15 O -0.522 6.522 16 N -0.372 5.372 17 C 0.053 3.947 18 H 0.109 0.891 19 C -0.208 4.208 20 C 0.309 3.691 21 O -0.452 6.452 22 N -0.340 5.340 23 C 0.035 3.965 24 C -0.202 4.202 25 C -0.232 4.232 26 C -0.189 4.189 27 C -0.014 4.014 28 C 0.005 3.995 29 H 0.077 0.923 30 H 0.221 0.779 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.062 0.938 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.506 -23.499 2.996 23.947 hybrid contribution -0.106 1.978 0.281 2.001 sum -3.612 -21.521 3.277 22.066 Atomic orbital electron populations 1.69838 1.07093 1.28276 1.50160 1.25806 0.95727 1.02750 0.93246 0.85509 0.78755 0.78889 0.78200 1.20094 1.21385 1.18956 1.21811 0.93944 0.91322 1.52203 0.91361 1.19865 0.87250 0.93129 0.80667 1.86085 1.51429 1.56724 1.45127 1.22591 0.97201 0.93848 1.01336 1.22153 0.87047 0.95343 0.96994 1.47854 1.24441 1.08552 1.55954 1.15658 0.81162 0.82635 0.78944 1.90881 1.41262 1.64685 1.55401 1.44686 1.28882 1.03583 1.60083 1.21454 0.90639 0.93520 0.89107 0.89098 1.22804 1.04134 0.95497 0.98355 1.20956 0.76616 0.86975 0.84516 1.90690 1.55287 1.77442 1.21795 1.48286 1.62169 1.16528 1.07013 1.21128 0.90270 0.81061 1.04078 1.22783 0.94386 0.99701 1.03342 1.23059 1.02324 1.05067 0.92751 1.23040 1.02297 0.94366 0.99241 1.22409 1.04258 0.88069 0.86699 1.22631 1.00040 0.77873 0.98959 0.92275 0.77932 0.89604 0.89542 0.88911 0.90168 0.74703 0.89485 0.86662 0.86364 0.90903 0.88007 0.89394 0.89455 0.87731 0.87073 0.87080 0.86948 0.93812 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.41 10.69 21.44 0.23 -49.18 16 2 C 0.03 1.33 5.29 84.65 0.45 1.77 16 3 Si 0.96 41.34 29.54 68.60 2.03 43.37 16 4 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.55 -28.09 8.27 25.60 0.21 -27.88 16 8 H 0.07 3.34 7.79 -2.91 -0.02 3.32 16 9 C 0.23 10.69 0.87 -10.15 -0.01 10.68 16 10 O -0.59 -28.83 13.16 -148.98 -1.96 -30.80 16 11 C -0.11 -3.88 6.13 31.78 0.19 -3.69 16 12 C 0.11 2.99 6.15 86.73 0.53 3.52 16 13 N -0.63 -23.64 3.33 -829.72 -2.76 -26.40 16 14 C 0.71 25.88 8.49 179.05 1.52 27.40 16 15 O -0.64 -29.66 16.34 -4.00 -0.07 -29.73 16 16 N -0.71 -16.29 5.15 -452.75 -2.33 -18.62 16 17 C 0.16 3.22 3.42 46.05 0.16 3.38 16 18 H 0.09 2.26 7.72 -2.38 -0.02 2.24 16 19 C -0.17 -3.83 6.59 30.59 0.20 -3.63 16 20 C 0.52 12.62 8.02 87.89 0.71 13.32 16 21 O -0.57 -18.69 17.59 -3.03 -0.05 -18.75 16 22 N -0.61 -9.83 2.93 -817.99 -2.40 -12.23 16 23 C 0.16 2.00 6.21 86.38 0.54 2.54 16 24 C -0.18 -2.53 6.01 -10.79 -0.06 -2.60 16 25 C -0.19 -3.04 10.18 30.62 0.31 -2.73 16 26 C -0.15 -1.56 10.25 30.62 0.31 -1.24 16 27 C 0.11 1.23 7.07 86.83 0.61 1.85 16 28 C 0.13 6.10 5.38 86.85 0.47 6.57 16 29 H 0.27 13.99 8.31 -92.71 -0.77 13.21 16 30 H 0.37 19.46 7.56 -74.06 -0.56 18.90 16 31 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.09 2.82 8.03 -2.39 -0.02 2.80 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.41 6.40 7.35 -92.71 -0.68 5.72 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.12 2.47 8.08 -2.39 -0.02 2.45 16 38 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.50 8.03 -2.39 -0.02 1.48 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.11 0.66 7.77 -2.39 -0.02 0.65 16 46 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.04 2.42 7.33 -2.38 -0.02 2.40 16 48 H 0.04 1.87 8.03 -2.39 -0.02 1.85 16 Total: -1.00 -73.33 393.48 -1.43 -74.76 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.26 Total: 38.30 kcal Atomic # 6 Polarization: 23.13 SS G_CDS: 6.14 Total: 29.28 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -7.26 Total: -106.43 kcal Atomic # 8 Polarization: -77.19 SS G_CDS: -2.08 Total: -79.27 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -73.33 -1.43 -74.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890273318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.629 kcal (2) G-P(sol) polarization free energy of solvation -73.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds