Wall clock time and date at job start Sat Apr 11 2020 05:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48502 * 109.46932 * 269.99777 * 3 2 1 5 5 H 1.48501 * 109.46852 * 29.99497 * 3 2 1 6 6 H 1.48500 * 109.47353 * 149.99751 * 3 2 1 7 7 C 1.37877 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00349 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.88702 * 62.42345 * 9 7 2 11 11 C 1.55405 * 111.03892 * 186.22899 * 9 7 2 12 12 C 1.54325 * 102.82616 * 153.47058 * 11 9 7 13 13 N 1.47018 * 107.40412 * 337.97548 * 12 11 9 14 14 C 1.34777 * 125.64981 * 178.82520 * 13 12 11 15 15 O 1.21585 * 120.00283 * 180.02562 * 14 13 12 16 16 N 1.34776 * 120.00031 * 0.03019 * 14 13 12 17 17 C 1.46499 * 120.00406 * 179.97438 * 16 14 13 18 18 H 1.08999 * 110.85323 * 322.66253 * 17 16 14 19 19 C 1.54623 * 110.97033 * 86.45005 * 17 16 14 20 20 C 1.51280 * 104.19807 * 142.91868 * 19 17 16 21 21 O 1.21277 * 124.94376 * 163.77881 * 20 19 17 22 22 N 1.34423 * 110.11244 * 343.75195 * 20 19 17 23 23 C 1.46500 * 124.34965 * 179.57545 * 22 20 19 24 24 C 1.52998 * 109.47410 * 90.01819 * 23 22 20 25 25 C 1.53004 * 117.49525 * 243.74653 * 24 23 22 26 26 C 1.53001 * 117.49829 * 175.09231 * 24 23 22 27 27 C 1.46762 * 111.30184 * 359.58700 * 22 20 19 28 28 C 1.47426 * 108.70517 * 358.86539 * 13 12 11 29 29 H 0.97001 * 119.99864 * 0.02562 * 1 2 3 30 30 H 0.96704 * 114.00274 * 297.57730 * 10 9 7 31 31 H 1.09000 * 110.69068 * 35.18317 * 11 9 7 32 32 H 1.09002 * 110.85092 * 271.83311 * 11 9 7 33 33 H 1.09002 * 109.88192 * 218.47989 * 12 11 9 34 34 H 1.09000 * 109.88128 * 97.46841 * 12 11 9 35 35 H 0.97007 * 119.99661 * 359.97438 * 16 14 13 36 36 H 1.09007 * 110.48913 * 261.59693 * 19 17 16 37 37 H 1.09000 * 110.48812 * 24.23801 * 19 17 16 38 38 H 1.08998 * 109.46973 * 210.01972 * 23 22 20 39 39 H 1.09007 * 109.46893 * 330.01385 * 23 22 20 40 40 H 1.08997 * 115.54910 * 29.41435 * 24 23 22 41 41 H 1.09001 * 117.50394 * 0.02562 * 25 24 23 42 42 H 1.09001 * 117.49590 * 145.01899 * 25 24 23 43 43 H 1.09001 * 117.49757 * 214.98045 * 26 24 23 44 44 H 1.08999 * 117.50091 * 359.96763 * 26 24 23 45 45 H 1.09006 * 110.24576 * 258.02010 * 27 22 20 46 46 H 1.08995 * 110.24669 * 136.02442 * 27 22 20 47 47 H 1.08999 * 110.36956 * 142.96999 * 28 13 12 48 48 H 1.09001 * 110.36709 * 265.18192 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4616 -2.6316 -1.1831 11 6 2.2208 -3.7032 0.1586 12 6 1.3268 -4.7800 0.8088 13 7 0.2062 -4.0865 1.4604 14 6 -0.8077 -4.6800 2.1209 15 8 -1.6849 -4.0039 2.6226 16 7 -0.8491 -6.0231 2.2255 17 6 -1.9507 -6.6683 2.9440 18 1 -2.2412 -6.0824 3.8160 19 6 -3.1589 -6.9039 2.0083 20 6 -3.7175 -8.2379 2.4522 21 8 -4.8198 -8.6578 2.1706 22 7 -2.8139 -8.8903 3.2039 23 6 -3.0350 -10.2084 3.8038 24 6 -2.5798 -11.2956 2.8283 25 6 -3.6452 -12.2528 2.2900 26 6 -2.6218 -12.7451 3.3163 27 6 -1.5777 -8.1123 3.3465 28 6 0.3744 -2.6342 1.2706 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2244 -1.9564 -1.2760 31 1 3.0522 -3.4446 0.8144 32 1 2.5842 -4.0387 -0.8128 33 1 1.8986 -5.3383 1.5502 34 1 0.9486 -5.4589 0.0445 35 1 -0.1493 -6.5625 1.8250 36 1 -3.9017 -6.1169 2.1387 37 1 -2.8328 -6.9536 0.9694 38 1 -2.4632 -10.2872 4.7284 39 1 -4.0957 -10.3356 4.0207 40 1 -1.7698 -11.0143 2.1554 41 1 -4.6705 -12.1077 2.6305 42 1 -3.5358 -12.6014 1.2631 43 1 -1.8394 -13.4175 2.9641 44 1 -2.9732 -12.9241 4.3324 45 1 -0.8076 -8.5024 2.6810 46 1 -1.2326 -8.1386 4.3801 47 1 -0.5934 -2.1571 1.1162 48 1 0.8799 -2.1953 2.1308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890273319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:53 Heat of formation + Delta-G solvation = -75.396830 kcal Electronic energy + Delta-G solvation = -29609.928708 eV Core-core repulsion = 25472.894044 eV Total energy + Delta-G solvation = -4137.034664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84940 -39.57269 -37.75684 -37.52231 -36.47668 -34.29899 -34.12409 -32.24515 -31.38042 -29.90099 -27.91255 -27.68117 -26.80783 -24.99837 -22.91899 -22.69638 -21.77270 -21.25504 -20.01384 -19.70260 -19.42825 -17.71648 -17.18094 -17.06289 -16.76171 -15.79375 -15.42083 -15.39981 -15.19490 -14.98817 -14.47464 -14.45052 -14.13222 -13.83725 -13.72253 -13.39780 -13.16016 -12.97389 -12.86432 -12.77373 -12.18937 -12.01620 -11.90922 -11.85922 -11.68541 -11.49283 -11.33551 -11.05315 -10.87545 -10.84537 -10.64520 -10.48727 -10.41931 -10.22246 -10.04713 -9.70715 -9.39459 -9.04902 -9.00005 -8.71359 -8.38867 -7.76640 -6.28974 -4.38916 2.42445 2.54755 2.99018 3.20357 3.28027 3.29872 3.44004 3.59850 4.09613 4.22874 4.27967 4.33129 4.42804 4.55508 4.60448 4.73463 4.77066 4.93943 4.98038 5.11338 5.16462 5.21401 5.28137 5.35112 5.38084 5.56031 5.58846 5.66272 5.74640 5.76598 5.79650 5.83275 5.96240 6.06447 6.23813 6.46409 6.56226 6.66149 6.83446 6.84306 6.88807 7.18721 7.28676 7.54242 7.72859 7.97748 8.01235 8.43285 8.65029 9.01840 9.28302 9.36600 10.77986 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027760 B = 0.002192 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.408347 B =12768.059720 C =13125.337120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.105 3.895 13 N -0.626 5.626 14 C 0.718 3.282 15 O -0.591 6.591 16 N -0.742 5.742 17 C 0.160 3.840 18 H 0.110 0.890 19 C -0.170 4.170 20 C 0.524 3.476 21 O -0.527 6.527 22 N -0.618 5.618 23 C 0.158 3.842 24 C -0.175 4.175 25 C -0.173 4.173 26 C -0.175 4.175 27 C 0.100 3.900 28 C 0.114 3.886 29 H 0.270 0.730 30 H 0.381 0.619 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.395 0.605 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -20.890 7.361 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.362 5.362 14 C 0.420 3.580 15 O -0.470 6.470 16 N -0.400 5.400 17 C 0.053 3.947 18 H 0.128 0.872 19 C -0.211 4.211 20 C 0.312 3.688 21 O -0.403 6.403 22 N -0.353 5.353 23 C 0.036 3.964 24 C -0.194 4.194 25 C -0.210 4.210 26 C -0.213 4.213 27 C -0.024 4.024 28 C -0.008 4.008 29 H 0.080 0.920 30 H 0.231 0.769 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.617 -21.062 7.575 22.441 hybrid contribution 0.557 1.043 -0.159 1.193 sum -1.060 -20.019 7.416 21.374 Atomic orbital electron populations 1.69716 1.05960 1.27941 1.49341 1.25084 0.95046 0.99765 0.93357 0.86409 0.79756 0.82481 0.78289 1.20416 1.21012 1.19720 1.21442 0.93617 0.90026 1.52584 0.91548 1.19688 0.86611 0.91536 0.81409 1.86101 1.51574 1.57162 1.44324 1.22632 0.97507 0.95180 1.00089 1.21936 0.88342 0.96097 0.95523 1.47950 1.23174 1.09883 1.55240 1.15460 0.81905 0.81071 0.79545 1.90908 1.39458 1.63070 1.53529 1.45028 1.28092 1.05741 1.61112 1.21433 0.86109 0.91833 0.95343 0.87184 1.22908 1.00049 0.95952 1.02233 1.20936 0.84117 0.86621 0.77105 1.90714 1.20146 1.72293 1.57147 1.48222 1.16071 1.18500 1.52480 1.20945 1.01981 0.79235 0.94268 1.22765 1.02451 0.91156 1.03010 1.23034 0.95639 1.03243 0.99067 1.22964 1.02591 0.96036 0.99710 1.22286 0.87005 0.90259 1.02881 1.23165 1.02640 0.75444 0.99573 0.91965 0.76874 0.90382 0.90766 0.93086 0.92641 0.77008 0.87180 0.87288 0.89800 0.89736 0.87597 0.88484 0.88897 0.88669 0.88621 0.90591 0.89339 0.89568 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.40 10.69 55.43 0.59 -22.81 16 2 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 3 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.60 8.27 -34.44 -0.28 -13.88 16 8 H 0.07 1.64 7.79 -52.49 -0.41 1.23 16 9 C 0.25 5.76 0.87 -89.49 -0.08 5.69 16 10 O -0.58 -14.40 13.16 -35.23 -0.46 -14.86 16 11 C -0.12 -2.16 6.15 -24.76 -0.15 -2.31 16 12 C 0.10 1.66 6.14 -3.07 -0.02 1.64 16 13 N -0.63 -12.04 3.33 -176.24 -0.59 -12.63 16 14 C 0.72 13.26 8.49 -86.92 -0.74 12.52 16 15 O -0.59 -13.28 16.34 5.29 0.09 -13.20 16 16 N -0.74 -9.42 5.14 -57.08 -0.29 -9.72 16 17 C 0.16 1.75 3.43 -66.30 -0.23 1.52 16 18 H 0.11 1.34 7.72 -51.93 -0.40 0.94 16 19 C -0.17 -2.07 6.59 -26.75 -0.18 -2.24 16 20 C 0.52 6.64 8.02 -10.86 -0.09 6.55 16 21 O -0.53 -8.60 17.60 5.56 0.10 -8.50 16 22 N -0.62 -5.79 2.93 -172.42 -0.51 -6.29 16 23 C 0.16 1.23 6.21 -4.04 -0.03 1.20 16 24 C -0.17 -1.32 6.01 -90.62 -0.54 -1.86 16 25 C -0.17 -1.36 10.18 -26.69 -0.27 -1.63 16 26 C -0.18 -1.07 10.25 -26.70 -0.27 -1.34 16 27 C 0.10 0.75 7.07 -3.12 -0.02 0.73 16 28 C 0.11 2.63 5.39 -2.53 -0.01 2.61 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.38 9.75 7.57 45.56 0.34 10.10 16 31 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.40 3.99 7.35 -40.82 -0.30 3.69 16 36 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.75 7.66 -51.93 -0.40 0.35 16 40 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.47 7.77 -51.93 -0.40 0.06 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 2.28 7.33 -51.93 -0.38 1.90 16 48 H 0.06 1.40 8.03 -51.93 -0.42 0.98 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -31.69 393.50 -10.15 -41.84 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -6.98 Total: 14.34 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -3.01 Total: 10.91 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.79 Total: -51.44 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -0.28 Total: -36.57 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.69 -10.15 -41.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890273319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.557 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds