Wall clock time and date at job start Sat Apr 11 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48502 * 109.46932 * 269.99777 * 3 2 1 5 5 H 1.48501 * 109.46852 * 29.99497 * 3 2 1 6 6 H 1.48500 * 109.47353 * 149.99751 * 3 2 1 7 7 C 1.37877 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99646 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00349 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.88702 * 62.42345 * 9 7 2 11 11 C 1.55405 * 111.03892 * 186.22899 * 9 7 2 12 12 C 1.54325 * 102.82616 * 153.47058 * 11 9 7 13 13 N 1.47018 * 107.40412 * 337.97548 * 12 11 9 14 14 C 1.34777 * 125.64981 * 178.82520 * 13 12 11 15 15 O 1.21585 * 120.00283 * 180.02562 * 14 13 12 16 16 N 1.34776 * 120.00031 * 0.03019 * 14 13 12 17 17 C 1.46499 * 120.00406 * 179.97438 * 16 14 13 18 18 H 1.08999 * 110.85323 * 322.66253 * 17 16 14 19 19 C 1.54623 * 110.97033 * 86.45005 * 17 16 14 20 20 C 1.51280 * 104.19807 * 142.91868 * 19 17 16 21 21 O 1.21277 * 124.94376 * 163.77881 * 20 19 17 22 22 N 1.34423 * 110.11244 * 343.75195 * 20 19 17 23 23 C 1.46500 * 124.34965 * 179.57545 * 22 20 19 24 24 C 1.52998 * 109.47410 * 90.01819 * 23 22 20 25 25 C 1.53004 * 117.49525 * 243.74653 * 24 23 22 26 26 C 1.53001 * 117.49829 * 175.09231 * 24 23 22 27 27 C 1.46762 * 111.30184 * 359.58700 * 22 20 19 28 28 C 1.47426 * 108.70517 * 358.86539 * 13 12 11 29 29 H 0.97001 * 119.99864 * 0.02562 * 1 2 3 30 30 H 0.96704 * 114.00274 * 297.57730 * 10 9 7 31 31 H 1.09000 * 110.69068 * 35.18317 * 11 9 7 32 32 H 1.09002 * 110.85092 * 271.83311 * 11 9 7 33 33 H 1.09002 * 109.88192 * 218.47989 * 12 11 9 34 34 H 1.09000 * 109.88128 * 97.46841 * 12 11 9 35 35 H 0.97007 * 119.99661 * 359.97438 * 16 14 13 36 36 H 1.09007 * 110.48913 * 261.59693 * 19 17 16 37 37 H 1.09000 * 110.48812 * 24.23801 * 19 17 16 38 38 H 1.08998 * 109.46973 * 210.01972 * 23 22 20 39 39 H 1.09007 * 109.46893 * 330.01385 * 23 22 20 40 40 H 1.08997 * 115.54910 * 29.41435 * 24 23 22 41 41 H 1.09001 * 117.50394 * 0.02562 * 25 24 23 42 42 H 1.09001 * 117.49590 * 145.01899 * 25 24 23 43 43 H 1.09001 * 117.49757 * 214.98045 * 26 24 23 44 44 H 1.08999 * 117.50091 * 359.96763 * 26 24 23 45 45 H 1.09006 * 110.24576 * 258.02010 * 27 22 20 46 46 H 1.08995 * 110.24669 * 136.02442 * 27 22 20 47 47 H 1.08999 * 110.36956 * 142.96999 * 28 13 12 48 48 H 1.09001 * 110.36709 * 265.18192 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.4616 -2.6316 -1.1831 11 6 2.2208 -3.7032 0.1586 12 6 1.3268 -4.7800 0.8088 13 7 0.2062 -4.0865 1.4604 14 6 -0.8077 -4.6800 2.1209 15 8 -1.6849 -4.0039 2.6226 16 7 -0.8491 -6.0231 2.2255 17 6 -1.9507 -6.6683 2.9440 18 1 -2.2412 -6.0824 3.8160 19 6 -3.1589 -6.9039 2.0083 20 6 -3.7175 -8.2379 2.4522 21 8 -4.8198 -8.6578 2.1706 22 7 -2.8139 -8.8903 3.2039 23 6 -3.0350 -10.2084 3.8038 24 6 -2.5798 -11.2956 2.8283 25 6 -3.6452 -12.2528 2.2900 26 6 -2.6218 -12.7451 3.3163 27 6 -1.5777 -8.1123 3.3465 28 6 0.3744 -2.6342 1.2706 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2244 -1.9564 -1.2760 31 1 3.0522 -3.4446 0.8144 32 1 2.5842 -4.0387 -0.8128 33 1 1.8986 -5.3383 1.5502 34 1 0.9486 -5.4589 0.0445 35 1 -0.1493 -6.5625 1.8250 36 1 -3.9017 -6.1169 2.1387 37 1 -2.8328 -6.9536 0.9694 38 1 -2.4632 -10.2872 4.7284 39 1 -4.0957 -10.3356 4.0207 40 1 -1.7698 -11.0143 2.1554 41 1 -4.6705 -12.1077 2.6305 42 1 -3.5358 -12.6014 1.2631 43 1 -1.8394 -13.4175 2.9641 44 1 -2.9732 -12.9241 4.3324 45 1 -0.8076 -8.5024 2.6810 46 1 -1.2326 -8.1386 4.3801 47 1 -0.5934 -2.1571 1.1162 48 1 0.8799 -2.1953 2.1308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890273319.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:52 Heat of formation + Delta-G solvation = -98.443279 kcal Electronic energy + Delta-G solvation = -29610.928077 eV Core-core repulsion = 25472.894044 eV Total energy + Delta-G solvation = -4138.034034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84301 -40.95353 -39.12317 -38.33510 -37.60055 -36.00358 -35.23367 -34.20436 -32.51405 -31.32768 -29.49880 -28.58895 -27.73611 -26.69364 -24.32588 -23.25449 -22.73401 -21.97673 -21.43181 -21.14907 -20.45343 -19.23454 -18.82024 -18.05633 -17.75744 -17.08781 -16.75932 -16.67308 -16.29133 -16.24044 -15.98697 -15.45910 -15.23937 -15.05192 -14.71999 -14.61832 -14.58783 -14.38474 -14.02916 -13.70582 -13.49580 -13.46038 -13.24976 -12.86684 -12.82093 -12.61443 -12.50638 -12.38951 -12.33518 -12.26550 -12.20154 -12.03412 -11.49963 -11.29699 -11.17167 -11.13398 -10.83470 -10.63958 -10.29725 -10.20491 -9.81417 -9.30679 -8.22159 -6.39047 1.42155 1.43570 1.45624 1.54407 1.55620 1.93428 2.17655 2.39936 2.88836 3.00178 3.04668 3.31726 3.50436 3.75426 3.80129 3.84256 3.95950 3.98751 4.11308 4.13507 4.23805 4.32442 4.40122 4.47975 4.53176 4.57353 4.68145 4.71904 4.78306 4.79931 4.81201 4.86634 5.02467 5.12143 5.15923 5.20645 5.26174 5.33154 5.41907 5.46953 5.50223 5.52288 5.79177 5.97637 6.08201 6.20400 6.68587 7.03200 7.09369 7.30526 7.37780 7.59529 8.82613 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.027760 B = 0.002192 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.408347 B =12768.059720 C =13125.337120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.230 3.770 10 O -0.588 6.588 11 C -0.112 4.112 12 C 0.106 3.894 13 N -0.632 5.632 14 C 0.714 3.286 15 O -0.640 6.640 16 N -0.715 5.715 17 C 0.160 3.840 18 H 0.098 0.902 19 C -0.169 4.169 20 C 0.521 3.479 21 O -0.573 6.573 22 N -0.607 5.607 23 C 0.154 3.846 24 C -0.178 4.178 25 C -0.196 4.196 26 C -0.153 4.153 27 C 0.109 3.891 28 C 0.129 3.871 29 H 0.268 0.732 30 H 0.372 0.628 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.121 0.879 47 H 0.042 0.958 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.266 -23.426 8.395 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.592 4.592 8 H 0.087 0.913 9 C 0.189 3.811 10 O -0.395 6.395 11 C -0.149 4.149 12 C -0.015 4.015 13 N -0.368 5.368 14 C 0.416 3.584 15 O -0.522 6.522 16 N -0.373 5.373 17 C 0.053 3.947 18 H 0.116 0.884 19 C -0.211 4.211 20 C 0.310 3.690 21 O -0.453 6.453 22 N -0.340 5.340 23 C 0.033 3.967 24 C -0.198 4.198 25 C -0.233 4.233 26 C -0.190 4.190 27 C -0.013 4.013 28 C 0.005 3.995 29 H 0.077 0.923 30 H 0.220 0.780 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.139 0.861 47 H 0.060 0.940 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.275 -23.686 8.618 25.237 hybrid contribution -0.334 1.805 -0.482 1.898 sum 0.940 -21.881 8.136 23.363 Atomic orbital electron populations 1.69848 1.07153 1.28274 1.50177 1.25826 0.95716 1.02815 0.93247 0.85494 0.78792 0.78816 0.78155 1.20236 1.21376 1.18776 1.21809 0.93961 0.91258 1.52178 0.91265 1.19951 0.87260 0.93201 0.80661 1.86093 1.51454 1.56728 1.45275 1.22640 0.97206 0.93778 1.01303 1.22139 0.87145 0.95305 0.96961 1.47853 1.24571 1.08552 1.55830 1.15656 0.81057 0.82609 0.79072 1.90879 1.41168 1.64721 1.55385 1.44706 1.28693 1.03568 1.60316 1.21493 0.85082 0.93897 0.94183 0.88441 1.22824 1.00196 0.95437 1.02627 1.20932 0.83941 0.86804 0.77370 1.90688 1.22150 1.73251 1.59165 1.48275 1.15867 1.18947 1.50871 1.21142 1.01822 0.78204 0.95521 1.22756 1.02065 0.91789 1.03148 1.23057 0.95604 1.04985 0.99689 1.23039 1.01432 0.94866 0.99665 1.22422 0.86403 0.87029 1.05465 1.22625 0.99972 0.77859 0.98996 0.92297 0.77977 0.89227 0.89782 0.88498 0.90759 0.74787 0.89485 0.87348 0.86451 0.91300 0.87428 0.89743 0.89238 0.87475 0.87376 0.87700 0.86113 0.93962 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.73 10.69 21.45 0.23 -49.50 16 2 C 0.02 1.28 5.29 84.65 0.45 1.73 16 3 Si 0.96 41.31 29.54 68.60 2.03 43.33 16 4 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.55 -28.05 8.27 25.60 0.21 -27.84 16 8 H 0.07 3.38 7.79 -2.91 -0.02 3.35 16 9 C 0.23 10.67 0.87 -10.06 -0.01 10.66 16 10 O -0.59 -29.44 13.16 -148.98 -1.96 -31.40 16 11 C -0.11 -3.87 6.15 31.87 0.20 -3.67 16 12 C 0.11 3.00 6.14 86.73 0.53 3.53 16 13 N -0.63 -23.66 3.33 -829.75 -2.76 -26.42 16 14 C 0.71 25.85 8.49 179.05 1.52 27.37 16 15 O -0.64 -29.52 16.34 -3.98 -0.07 -29.58 16 16 N -0.72 -16.34 5.14 -452.78 -2.33 -18.67 16 17 C 0.16 3.20 3.43 46.05 0.16 3.36 16 18 H 0.10 2.28 7.72 -2.39 -0.02 2.26 16 19 C -0.17 -4.12 6.59 30.59 0.20 -3.91 16 20 C 0.52 13.04 8.02 87.90 0.71 13.75 16 21 O -0.57 -19.28 17.60 -3.02 -0.05 -19.33 16 22 N -0.61 -9.90 2.93 -817.99 -2.40 -12.30 16 23 C 0.15 1.99 6.21 86.38 0.54 2.52 16 24 C -0.18 -2.24 6.01 -10.79 -0.06 -2.31 16 25 C -0.20 -2.90 10.18 30.62 0.31 -2.59 16 26 C -0.15 -1.43 10.25 30.62 0.31 -1.11 16 27 C 0.11 1.19 7.07 86.83 0.61 1.81 16 28 C 0.13 6.12 5.39 86.86 0.47 6.59 16 29 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.37 19.80 7.57 -74.05 -0.56 19.24 16 31 H 0.09 2.88 8.03 -2.39 -0.02 2.86 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.41 6.51 7.35 -92.70 -0.68 5.82 16 36 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.11 2.63 8.08 -2.39 -0.02 2.61 16 38 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 1.15 7.66 -2.38 -0.02 1.13 16 40 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.44 8.03 -2.39 -0.02 1.42 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.11 0.67 7.77 -2.38 -0.02 0.66 16 46 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.04 2.35 7.33 -2.39 -0.02 2.33 16 48 H 0.04 2.00 8.03 -2.39 -0.02 1.98 16 Total: -1.00 -73.91 393.50 -1.43 -75.34 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.26 Total: 38.63 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 6.14 Total: 29.89 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -7.26 Total: -106.89 kcal Atomic # 8 Polarization: -78.23 SS G_CDS: -2.08 Total: -80.31 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Total: -73.91 -1.43 -75.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890273319.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.104 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds