Wall clock time and date at job start Sat Apr 11 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00031 * 2 1 4 4 H 1.48497 * 109.46858 * 269.99861 * 3 2 1 5 5 H 1.48496 * 109.47137 * 29.99825 * 3 2 1 6 6 H 1.48497 * 109.47135 * 149.99938 * 3 2 1 7 7 C 1.37876 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00210 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47335 * 59.99838 * 9 7 2 11 11 N 1.46499 * 109.47054 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00065 * 204.99851 * 11 9 7 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 9 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 N 1.46896 * 109.47256 * 180.02562 * 16 15 14 18 18 C 1.48009 * 110.99646 * 298.71558 * 17 16 15 19 19 C 1.50452 * 112.82565 * 191.34881 * 18 17 16 20 20 C 1.54306 * 108.50029 * 93.72452 * 19 18 17 21 21 C 1.45878 * 112.19080 * 281.46210 * 20 19 18 22 22 C 1.54313 * 112.18216 * 61.12174 * 21 20 19 23 23 C 1.48006 * 111.00345 * 169.99979 * 17 16 15 24 24 C 1.53008 * 109.47049 * 300.00201 * 9 7 2 25 25 F 1.39905 * 109.47048 * 299.99807 * 24 9 7 26 26 F 1.39898 * 109.46961 * 59.99996 * 24 9 7 27 27 F 1.39903 * 109.46989 * 179.97438 * 24 9 7 28 28 H 0.96999 * 119.99952 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00386 * 25.00220 * 11 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 31 31 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 32 32 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 33 33 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 34 34 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 35 35 H 1.08995 * 108.81231 * 312.20872 * 18 17 16 36 36 H 1.09000 * 108.80785 * 70.48639 * 18 17 16 37 37 H 1.09007 * 109.62971 * 334.02473 * 19 18 17 38 38 H 1.08999 * 109.62933 * 213.43442 * 19 18 17 39 39 H 1.09006 * 108.93650 * 160.76121 * 20 19 18 40 40 H 1.09001 * 108.86511 * 42.11649 * 20 19 18 41 41 H 1.08999 * 108.93658 * 300.43202 * 21 20 19 42 42 H 1.08995 * 108.93648 * 181.81905 * 21 20 19 43 43 H 1.08999 * 109.63331 * 161.76259 * 22 21 20 44 44 H 1.09006 * 109.63113 * 41.16530 * 22 21 20 45 45 H 1.08995 * 108.81388 * 205.69824 * 23 17 16 46 46 H 1.09004 * 108.80569 * 324.08225 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6240 -2.5575 -0.8879 11 7 2.2030 -3.6126 0.0027 12 6 1.8369 -4.8127 -0.4895 13 8 0.7166 -4.9711 -0.9348 14 7 2.7125 -5.8373 -0.4881 15 6 2.3165 -7.1400 -1.0287 16 6 3.4881 -8.1172 -0.9142 17 7 3.0913 -9.4233 -1.4568 18 6 1.9565 -9.9914 -0.6951 19 6 1.6908 -11.4334 -1.0323 20 6 2.4501 -12.3201 -0.0231 21 6 3.8700 -12.4243 -0.3406 22 6 4.5766 -11.0528 -0.3077 23 6 4.2602 -10.3222 -1.5842 24 6 0.3718 -2.5793 1.2514 25 9 1.1766 -2.5044 2.3934 26 9 -0.5372 -1.5159 1.2509 27 9 -0.3281 -3.7906 1.2522 28 1 -0.4850 0.8400 -0.0004 29 1 3.0969 -3.4863 0.3576 30 1 3.6064 -5.7108 -0.1332 31 1 1.4665 -7.5242 -0.4647 32 1 2.0371 -7.0289 -2.0764 33 1 4.3381 -7.7330 -1.4781 34 1 3.7676 -8.2283 0.1335 35 1 2.1742 -9.9139 0.3701 36 1 1.0610 -9.4089 -0.9119 37 1 2.0427 -11.6441 -2.0422 38 1 0.6216 -11.6343 -0.9645 39 1 2.0119 -13.3182 -0.0296 40 1 2.3408 -11.8926 0.9736 41 1 3.9793 -12.8547 -1.3361 42 1 4.3467 -13.0853 0.3831 43 1 5.6538 -11.1977 -0.2260 44 1 4.2161 -10.4755 0.5438 45 1 4.0577 -11.0534 -2.3667 46 1 5.1287 -9.7303 -1.8731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932924836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:02:17 Heat of formation + Delta-G solvation = -168.892349 kcal Electronic energy + Delta-G solvation = -30505.603616 eV Core-core repulsion = 25822.657941 eV Total energy + Delta-G solvation = -4682.945675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.28673 -45.94055 -45.55705 -39.80620 -39.15178 -35.86152 -34.59033 -33.68865 -32.52435 -32.40758 -29.60388 -27.91841 -25.87576 -25.12502 -24.50818 -22.60408 -21.45873 -20.83757 -20.20226 -19.71941 -18.28703 -16.90231 -16.79409 -16.60812 -16.52105 -16.29529 -15.82083 -15.37301 -14.99401 -14.79355 -14.54814 -14.35338 -13.95983 -13.68035 -13.40389 -13.32110 -13.20017 -12.86213 -12.74923 -12.50114 -12.42479 -12.34006 -12.23622 -11.93946 -11.88402 -11.76396 -11.54492 -11.37685 -11.17543 -11.11082 -10.89934 -10.83983 -10.81772 -10.71379 -10.51589 -10.37533 -9.63644 -9.51099 -8.75313 -8.67771 -8.42198 -8.11910 -6.21046 -4.44665 3.06177 3.19962 3.26467 3.29546 3.75954 3.84051 4.21417 4.31195 4.41502 4.56662 4.62421 4.78870 4.82775 4.88491 4.96250 4.99547 5.03896 5.08402 5.17962 5.33121 5.36453 5.42815 5.50855 5.65810 5.71502 5.76820 5.81784 5.88336 5.89324 5.93506 5.97644 5.99396 6.02654 6.08801 6.27238 6.73607 6.88168 6.90924 6.92918 7.25314 7.40733 7.65234 7.72393 8.52301 8.70284 9.18263 9.29687 10.70669 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.002348 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.645429 B =11923.961095 C =12442.592973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.727 5.727 12 C 0.699 3.301 13 O -0.583 6.583 14 N -0.754 5.754 15 C 0.143 3.857 16 C 0.050 3.950 17 N -0.545 5.545 18 C 0.057 3.943 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.151 4.151 23 C 0.061 3.939 24 C 0.415 3.585 25 F -0.211 7.211 26 F -0.138 7.138 27 F -0.217 7.217 28 H 0.268 0.732 29 H 0.394 0.606 30 H 0.391 0.609 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.308 -20.041 -0.490 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.103 0.897 11 N -0.380 5.380 12 C 0.399 3.601 13 O -0.460 6.460 14 N -0.412 5.412 15 C 0.018 3.982 16 C -0.079 4.079 17 N -0.270 5.270 18 C -0.070 4.070 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.154 4.154 22 C -0.190 4.190 23 C -0.067 4.067 24 C 0.359 3.641 25 F -0.193 7.193 26 F -0.119 7.119 27 F -0.199 7.199 28 H 0.079 0.921 29 H 0.227 0.773 30 H 0.224 0.776 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.094 0.906 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.846 -19.992 -1.338 21.518 hybrid contribution 1.393 0.788 1.571 2.243 sum 9.240 -19.204 0.232 21.312 Atomic orbital electron populations 1.70408 1.05839 1.27322 1.43704 1.25084 0.95154 1.00082 0.94128 0.86212 0.79555 0.81707 0.78332 1.20207 1.20822 1.19578 1.20877 0.93764 0.88127 1.56069 0.90524 1.19587 0.88271 0.84955 0.91550 0.89724 1.45257 1.17342 1.09689 1.65679 1.16032 0.84362 0.80459 0.79263 1.90922 1.19633 1.82894 1.52539 1.44995 1.16272 1.10935 1.68957 1.21026 0.96202 0.81066 0.99887 1.22248 0.97916 0.89384 0.98304 1.61755 1.08112 1.03001 1.54129 1.21888 0.93935 0.95582 0.95574 1.21439 1.00431 0.93975 1.00023 1.20624 0.95778 1.00213 0.99433 1.20542 0.95924 0.96985 1.01939 1.21946 1.00580 0.96931 0.99536 1.21897 0.92074 0.95770 0.96910 1.23195 0.80919 0.72787 0.87194 1.92981 1.74437 1.96193 1.55661 1.93398 1.68433 1.53850 1.96203 1.93072 1.81429 1.48390 1.96967 0.92136 0.77306 0.77622 0.91944 0.90963 0.90173 0.94480 0.94661 0.90339 0.90628 0.90955 0.92136 0.92283 0.91968 0.92456 0.91379 0.91727 0.90650 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.21 9.50 55.43 0.53 -22.68 16 2 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 7 C -0.55 -14.13 8.46 -34.44 -0.29 -14.43 16 8 H 0.08 1.85 7.74 -52.48 -0.41 1.44 16 9 C 0.26 6.63 2.21 -69.08 -0.15 6.48 16 10 H 0.09 2.41 7.58 -51.93 -0.39 2.01 16 11 N -0.73 -15.07 4.99 -59.81 -0.30 -15.37 16 12 C 0.70 14.24 8.10 -86.92 -0.70 13.53 16 13 O -0.58 -14.37 14.92 5.28 0.08 -14.29 16 14 N -0.75 -11.15 5.56 -65.23 -0.36 -11.51 16 15 C 0.14 1.90 5.48 -4.04 -0.02 1.88 16 16 C 0.05 0.49 4.97 -3.83 -0.02 0.47 16 17 N -0.54 -5.16 4.72 -235.89 -1.11 -6.27 16 18 C 0.06 0.53 4.32 -4.49 -0.02 0.52 16 19 C -0.12 -0.93 5.63 -27.32 -0.15 -1.09 16 20 C -0.12 -0.84 5.30 -29.42 -0.16 -1.00 16 21 C -0.12 -0.74 5.30 -29.41 -0.16 -0.90 16 22 C -0.15 -1.04 5.60 -27.32 -0.15 -1.19 16 23 C 0.06 0.46 5.16 -4.49 -0.02 0.44 16 24 C 0.42 10.86 2.81 37.16 0.10 10.97 16 25 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 26 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 27 F -0.22 -5.67 15.68 2.25 0.04 -5.64 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.39 6.94 8.55 -40.82 -0.35 6.59 16 30 H 0.39 4.50 8.49 -40.82 -0.35 4.15 16 31 H 0.06 0.91 6.67 -51.93 -0.35 0.57 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.71 7.79 -51.93 -0.40 0.31 16 34 H 0.04 0.35 7.82 -51.93 -0.41 -0.06 16 35 H 0.04 0.34 6.44 -51.93 -0.33 0.01 16 36 H 0.08 0.83 6.91 -51.93 -0.36 0.47 16 37 H 0.08 0.60 7.08 -51.93 -0.37 0.23 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 41 H 0.06 0.38 7.52 -51.93 -0.39 -0.01 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.52 6.74 -51.93 -0.35 0.17 16 45 H 0.08 0.56 6.59 -51.93 -0.34 0.22 16 46 H 0.07 0.49 7.63 -51.93 -0.40 0.09 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -31.02 364.67 -9.26 -40.28 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.83 Total: 6.65 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: -1.84 Total: 17.27 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -1.25 Total: -55.83 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 9 Polarization: -14.82 SS G_CDS: 0.10 Total: -14.72 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.02 -9.26 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932924836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.611 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds