Wall clock time and date at job start Sat Apr 11 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00031 * 2 1 4 4 H 1.48497 * 109.46858 * 269.99861 * 3 2 1 5 5 H 1.48496 * 109.47137 * 29.99825 * 3 2 1 6 6 H 1.48497 * 109.47135 * 149.99938 * 3 2 1 7 7 C 1.37876 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00210 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47335 * 59.99838 * 9 7 2 11 11 N 1.46499 * 109.47054 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00065 * 204.99851 * 11 9 7 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 9 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 9 15 15 C 1.46498 * 119.99828 * 180.27942 * 14 12 11 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 N 1.46896 * 109.47256 * 180.02562 * 16 15 14 18 18 C 1.48009 * 110.99646 * 298.71558 * 17 16 15 19 19 C 1.50452 * 112.82565 * 191.34881 * 18 17 16 20 20 C 1.54306 * 108.50029 * 93.72452 * 19 18 17 21 21 C 1.45878 * 112.19080 * 281.46210 * 20 19 18 22 22 C 1.54313 * 112.18216 * 61.12174 * 21 20 19 23 23 C 1.48006 * 111.00345 * 169.99979 * 17 16 15 24 24 C 1.53008 * 109.47049 * 300.00201 * 9 7 2 25 25 F 1.39905 * 109.47048 * 299.99807 * 24 9 7 26 26 F 1.39898 * 109.46961 * 59.99996 * 24 9 7 27 27 F 1.39903 * 109.46989 * 179.97438 * 24 9 7 28 28 H 0.96999 * 119.99952 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00386 * 25.00220 * 11 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 31 31 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 32 32 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 33 33 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 34 34 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 35 35 H 1.08995 * 108.81231 * 312.20872 * 18 17 16 36 36 H 1.09000 * 108.80785 * 70.48639 * 18 17 16 37 37 H 1.09007 * 109.62971 * 334.02473 * 19 18 17 38 38 H 1.08999 * 109.62933 * 213.43442 * 19 18 17 39 39 H 1.09006 * 108.93650 * 160.76121 * 20 19 18 40 40 H 1.09001 * 108.86511 * 42.11649 * 20 19 18 41 41 H 1.08999 * 108.93658 * 300.43202 * 21 20 19 42 42 H 1.08995 * 108.93648 * 181.81905 * 21 20 19 43 43 H 1.08999 * 109.63331 * 161.76259 * 22 21 20 44 44 H 1.09006 * 109.63113 * 41.16530 * 22 21 20 45 45 H 1.08995 * 108.81388 * 205.69824 * 23 17 16 46 46 H 1.09004 * 108.80569 * 324.08225 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6240 -2.5575 -0.8879 11 7 2.2030 -3.6126 0.0027 12 6 1.8369 -4.8127 -0.4895 13 8 0.7166 -4.9711 -0.9348 14 7 2.7125 -5.8373 -0.4881 15 6 2.3165 -7.1400 -1.0287 16 6 3.4881 -8.1172 -0.9142 17 7 3.0913 -9.4233 -1.4568 18 6 1.9565 -9.9914 -0.6951 19 6 1.6908 -11.4334 -1.0323 20 6 2.4501 -12.3201 -0.0231 21 6 3.8700 -12.4243 -0.3406 22 6 4.5766 -11.0528 -0.3077 23 6 4.2602 -10.3222 -1.5842 24 6 0.3718 -2.5793 1.2514 25 9 1.1766 -2.5044 2.3934 26 9 -0.5372 -1.5159 1.2509 27 9 -0.3281 -3.7906 1.2522 28 1 -0.4850 0.8400 -0.0004 29 1 3.0969 -3.4863 0.3576 30 1 3.6064 -5.7108 -0.1332 31 1 1.4665 -7.5242 -0.4647 32 1 2.0371 -7.0289 -2.0764 33 1 4.3381 -7.7330 -1.4781 34 1 3.7676 -8.2283 0.1335 35 1 2.1742 -9.9139 0.3701 36 1 1.0610 -9.4089 -0.9119 37 1 2.0427 -11.6441 -2.0422 38 1 0.6216 -11.6343 -0.9645 39 1 2.0119 -13.3182 -0.0296 40 1 2.3408 -11.8926 0.9736 41 1 3.9793 -12.8547 -1.3361 42 1 4.3467 -13.0853 0.3831 43 1 5.6538 -11.1977 -0.2260 44 1 4.2161 -10.4755 0.5438 45 1 4.0577 -11.0534 -2.3667 46 1 5.1287 -9.7303 -1.8731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932924836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:02:17 Heat of formation + Delta-G solvation = -190.626674 kcal Electronic energy + Delta-G solvation = -30506.546087 eV Core-core repulsion = 25822.657941 eV Total energy + Delta-G solvation = -4683.888146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.39515 -48.03059 -47.70756 -41.00637 -40.24851 -37.02630 -36.24966 -34.89379 -34.34923 -33.05266 -30.93805 -29.38935 -26.78489 -26.51152 -25.77850 -23.84084 -23.04229 -21.89753 -21.39545 -20.51527 -19.90686 -18.86274 -18.76356 -18.55029 -17.89739 -17.38233 -16.90566 -16.85875 -16.47128 -16.16017 -15.59452 -15.39584 -15.11343 -14.99688 -14.87436 -14.69464 -14.50025 -14.43705 -14.27582 -14.22043 -14.00816 -13.95299 -13.85998 -13.54550 -13.14156 -13.03486 -12.83705 -12.73380 -12.59493 -12.25138 -12.20033 -12.10567 -11.73847 -11.57153 -11.51032 -11.42386 -11.28199 -11.08573 -10.66885 -10.30988 -9.76786 -9.15131 -8.19653 -6.50496 1.47436 1.49172 1.59556 1.69161 2.14633 2.38027 2.57600 2.87339 2.96184 3.43070 3.72357 3.81000 3.83224 3.87608 3.89889 4.07028 4.16387 4.21225 4.21810 4.35538 4.45241 4.48949 4.57811 4.73051 4.79112 4.84318 4.88000 4.98456 5.01040 5.05272 5.11723 5.23703 5.28101 5.34307 5.40306 5.44650 5.47151 5.50610 5.55004 5.66949 6.10048 6.13739 6.23058 6.54917 7.17364 7.22507 7.66345 8.73325 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.024847 B = 0.002348 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.645429 B =11923.961095 C =12442.592973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.013 3.987 3 Si 0.985 3.015 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.258 1.258 7 C -0.560 4.560 8 H 0.094 0.906 9 C 0.271 3.729 10 H 0.045 0.955 11 N -0.719 5.719 12 C 0.695 3.305 13 O -0.630 6.630 14 N -0.729 5.729 15 C 0.146 3.854 16 C 0.063 3.937 17 N -0.556 5.556 18 C 0.059 3.941 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.147 4.147 23 C 0.061 3.939 24 C 0.412 3.588 25 F -0.203 7.203 26 F -0.151 7.151 27 F -0.220 7.220 28 H 0.268 0.732 29 H 0.411 0.589 30 H 0.412 0.588 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.031 0.969 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.079 0.921 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.049 -20.707 -0.267 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.181 1.181 7 C -0.597 4.597 8 H 0.112 0.888 9 C 0.163 3.837 10 H 0.063 0.937 11 N -0.373 5.373 12 C 0.395 3.605 13 O -0.510 6.510 14 N -0.387 5.387 15 C 0.021 3.979 16 C -0.066 4.066 17 N -0.281 5.281 18 C -0.068 4.068 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.186 4.186 23 C -0.065 4.065 24 C 0.356 3.644 25 F -0.185 7.185 26 F -0.132 7.132 27 F -0.202 7.202 28 H 0.078 0.922 29 H 0.247 0.753 30 H 0.248 0.752 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.670 -20.709 -1.101 23.322 hybrid contribution 0.511 0.910 1.489 1.819 sum 11.182 -19.799 0.388 22.742 Atomic orbital electron populations 1.70542 1.07539 1.28152 1.44728 1.26026 0.95907 1.03750 0.93509 0.85137 0.78507 0.76991 0.78550 1.19552 1.21096 1.18138 1.21225 0.94583 0.88194 1.55670 0.88842 1.19169 0.88429 0.86618 0.89515 0.93712 1.44970 1.17412 1.09001 1.65965 1.16235 0.84386 0.81083 0.78845 1.90893 1.22001 1.83677 1.54461 1.44759 1.16281 1.10024 1.67651 1.21074 0.97564 0.80827 0.98392 1.22116 0.96433 0.88779 0.99263 1.61722 1.08993 1.03258 1.54164 1.21848 0.93317 0.96316 0.95326 1.21413 1.00790 0.93059 1.00288 1.20596 0.96207 1.00304 0.98607 1.20545 0.95415 0.96919 1.02497 1.21906 1.01348 0.96828 0.98484 1.21954 0.91448 0.95680 0.97460 1.23376 0.80891 0.72315 0.87853 1.92981 1.74103 1.96147 1.55265 1.93372 1.69003 1.54535 1.96317 1.93063 1.81593 1.48500 1.97020 0.92180 0.75288 0.75208 0.93521 0.92617 0.88506 0.93548 0.95087 0.92329 0.90638 0.90796 0.91255 0.93004 0.91381 0.91746 0.90126 0.92902 0.90303 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.02 9.50 21.45 0.20 -48.82 16 2 C 0.01 0.69 5.20 84.65 0.44 1.13 16 3 Si 0.98 40.52 29.54 68.60 2.03 42.55 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.56 -28.35 8.46 25.60 0.22 -28.14 16 8 H 0.09 4.31 7.74 -2.91 -0.02 4.29 16 9 C 0.27 13.82 2.21 44.25 0.10 13.92 16 10 H 0.05 2.66 7.58 -2.39 -0.02 2.64 16 11 N -0.72 -29.51 4.99 -461.40 -2.30 -31.81 16 12 C 0.69 28.33 8.10 179.05 1.45 29.78 16 13 O -0.63 -31.94 14.92 -4.01 -0.06 -32.00 16 14 N -0.73 -20.81 5.56 -478.54 -2.66 -23.47 16 15 C 0.15 3.84 5.48 86.38 0.47 4.31 16 16 C 0.06 1.12 4.97 86.30 0.43 1.55 16 17 N -0.56 -9.85 4.72 -900.22 -4.24 -14.10 16 18 C 0.06 1.09 4.32 85.27 0.37 1.46 16 19 C -0.12 -1.73 5.63 30.21 0.17 -1.56 16 20 C -0.12 -1.48 5.30 28.85 0.15 -1.32 16 21 C -0.12 -1.24 5.30 28.86 0.15 -1.09 16 22 C -0.15 -1.69 5.60 30.21 0.17 -1.52 16 23 C 0.06 0.80 5.16 85.26 0.44 1.24 16 24 C 0.41 21.81 2.81 71.98 0.20 22.01 16 25 F -0.20 -10.06 16.94 44.97 0.76 -9.30 16 26 F -0.15 -8.67 12.91 44.97 0.58 -8.09 16 27 F -0.22 -11.74 15.68 44.97 0.70 -11.04 16 28 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.41 13.80 8.55 -92.71 -0.79 13.00 16 30 H 0.41 8.50 8.49 -92.71 -0.79 7.71 16 31 H 0.05 1.39 6.67 -2.38 -0.02 1.38 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 1.45 7.79 -2.38 -0.02 1.43 16 34 H 0.05 0.77 7.82 -2.39 -0.02 0.75 16 35 H 0.03 0.59 6.44 -2.39 -0.02 0.58 16 36 H 0.06 1.29 6.91 -2.39 -0.02 1.28 16 37 H 0.07 1.12 7.08 -2.38 -0.02 1.10 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.05 0.72 7.51 -2.39 -0.02 0.70 16 41 H 0.07 0.67 7.52 -2.39 -0.02 0.65 16 42 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 44 H 0.05 0.75 6.74 -2.38 -0.02 0.73 16 45 H 0.08 1.00 6.59 -2.39 -0.02 0.98 16 46 H 0.08 0.89 7.63 -2.38 -0.02 0.87 16 Total: -1.00 -67.65 364.67 -0.78 -68.43 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.56 Total: 25.87 kcal Atomic # 6 Polarization: 37.01 SS G_CDS: 4.76 Total: 41.77 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -9.00 Total: -118.20 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.06 Total: -32.00 kcal Atomic # 9 Polarization: -30.47 SS G_CDS: 2.05 Total: -28.43 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -67.65 -0.78 -68.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932924836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.196 kcal (2) G-P(sol) polarization free energy of solvation -67.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds