Wall clock time and date at job start Sat Apr 11 2020 05:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46843 * 227.68218 * 3 2 1 5 5 N 1.46500 * 109.47018 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00684 * 270.00382 * 5 4 3 7 7 C 1.50699 * 109.47188 * 270.00043 * 6 5 4 8 8 H 1.07997 * 119.99775 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00206 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99688 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00394 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47012 * 89.99936 * 11 9 7 13 13 H 1.48498 * 109.47449 * 210.00648 * 11 9 7 14 14 H 1.48505 * 109.46832 * 330.00731 * 11 9 7 15 15 C 1.34785 * 119.99695 * 90.00393 * 5 4 3 16 16 O 1.21283 * 119.99905 * 180.02562 * 15 5 4 17 17 C 1.50703 * 119.99967 * 359.97438 * 15 5 4 18 18 N 1.46900 * 109.46719 * 174.41182 * 17 15 5 19 19 C 1.47901 * 111.00245 * 293.94783 * 18 17 15 20 20 C 1.53992 * 107.22872 * 214.25738 * 19 18 17 21 21 C 1.54601 * 105.13856 * 1.12738 * 20 19 18 22 22 C 1.48812 * 111.18047 * 176.61357 * 18 17 15 23 23 H 1.08997 * 110.66232 * 41.00521 * 22 18 17 24 24 C 1.53003 * 110.69863 * 278.02443 * 22 18 17 25 25 O 1.43748 * 109.62966 * 303.93540 * 24 22 18 26 26 C 1.44792 * 104.81682 * 215.80808 * 25 24 22 27 27 C 1.54914 * 101.71592 * 36.10643 * 26 25 24 28 28 O 1.43371 * 109.63142 * 184.57381 * 24 22 18 29 29 H 1.09000 * 109.46600 * 107.68543 * 3 2 1 30 30 H 1.08993 * 109.47476 * 347.68637 * 3 2 1 31 31 H 1.09000 * 109.47257 * 60.00727 * 4 3 2 32 32 H 1.09002 * 109.47615 * 300.00258 * 4 3 2 33 33 H 1.09005 * 109.46792 * 29.99637 * 6 5 4 34 34 H 1.08993 * 109.47617 * 149.99771 * 6 5 4 35 35 H 0.97005 * 119.99564 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47083 * 54.41387 * 17 15 5 37 37 H 1.08996 * 109.46935 * 294.41221 * 17 15 5 38 38 H 1.09003 * 109.91225 * 94.80859 * 19 18 17 39 39 H 1.09001 * 109.91473 * 333.71228 * 19 18 17 40 40 H 1.08996 * 110.30904 * 120.04092 * 20 19 18 41 41 H 1.08998 * 110.31107 * 242.11812 * 20 19 18 42 42 H 1.08998 * 110.72294 * 140.31491 * 21 20 19 43 43 H 1.08994 * 110.72593 * 263.42476 * 21 20 19 44 44 H 1.08996 * 109.62671 * 64.18363 * 24 22 18 45 45 H 1.09001 * 110.97642 * 278.00140 * 26 25 24 46 46 H 1.08991 * 110.97549 * 154.21467 * 26 25 24 47 47 H 1.09002 * 110.69188 * 206.04030 * 27 26 25 48 48 H 1.08994 * 110.69734 * 82.83779 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9720 1.0666 5 7 4.5825 0.9723 1.0671 6 6 5.3150 0.0344 1.9215 7 6 5.5657 0.6694 3.2649 8 1 5.2149 1.6715 3.4624 9 6 6.2430 -0.0289 4.2419 10 7 6.6706 -1.2491 4.0012 11 14 6.5544 0.7585 5.9070 12 1 5.4241 0.4502 6.8195 13 1 7.8144 0.2214 6.4807 14 1 6.6721 2.2299 5.7445 15 6 5.2564 1.8354 0.2813 16 8 6.4693 1.8353 0.2813 17 6 4.5030 2.7999 -0.5981 18 7 5.4519 3.7140 -1.2475 19 6 6.1122 4.5871 -0.2529 20 6 6.3460 5.9515 -0.9276 21 6 5.7539 5.8061 -2.3483 22 6 4.7554 4.6321 -2.1890 23 1 3.8158 4.9816 -1.7611 24 6 4.5114 3.9445 -3.5339 25 8 5.7597 3.4735 -4.0689 26 6 5.6425 3.6585 -5.5002 27 6 4.8333 4.9770 -5.5817 28 8 3.9373 4.8801 -4.4562 29 1 2.9711 0.3130 -0.9791 30 1 2.9718 -1.0031 0.2191 31 1 2.7544 0.6597 2.0457 32 1 2.7537 1.9759 0.8475 33 1 4.7260 -0.8734 2.0529 34 1 6.2675 -0.2150 1.4541 35 1 7.1474 -1.7403 4.6885 36 1 3.8028 3.3740 0.0088 37 1 3.9542 2.2450 -1.3590 38 1 7.0659 4.1529 0.0471 39 1 5.4693 4.7092 0.6188 40 1 5.8269 6.7381 -0.3801 41 1 7.4126 6.1692 -0.9812 42 1 5.2340 6.7172 -2.6445 43 1 6.5340 5.5576 -3.0677 44 1 3.8332 3.1023 -3.3968 45 1 5.0934 2.8347 -5.9564 46 1 6.6237 3.7736 -5.9604 47 1 4.2741 5.0285 -6.5159 48 1 5.4911 5.8397 -5.4773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933910489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:02:32 Heat of formation + Delta-G solvation = -77.334635 kcal Electronic energy + Delta-G solvation = -30440.388344 eV Core-core repulsion = 26303.269650 eV Total energy + Delta-G solvation = -4137.118694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77334 -39.49654 -38.00484 -36.79332 -35.15395 -35.13008 -32.97324 -32.11814 -31.20847 -30.80817 -28.56744 -27.95933 -25.93459 -24.39883 -23.98032 -23.36573 -22.60626 -20.94196 -20.36222 -18.42173 -17.61457 -17.47599 -16.95317 -16.58572 -16.45062 -16.34564 -15.75812 -15.33396 -15.12457 -14.72931 -14.58945 -14.42073 -14.15414 -13.86159 -13.68041 -13.36824 -13.27789 -12.96532 -12.75252 -12.64446 -12.42225 -12.30135 -12.16999 -11.99685 -11.83869 -11.74720 -11.46678 -11.28095 -11.19560 -11.16548 -10.96359 -10.82598 -10.60608 -10.57260 -10.35211 -10.16949 -9.75516 -9.68674 -8.95085 -8.46091 -8.23075 -7.79777 -6.07450 -4.11965 2.73456 2.81507 3.09121 3.28646 3.34632 3.36680 3.41487 3.58108 3.72507 4.06652 4.28582 4.36517 4.42638 4.47591 4.59023 4.70246 4.82344 4.95945 4.97631 5.08738 5.13526 5.14342 5.19448 5.22706 5.27749 5.28835 5.32645 5.35751 5.42312 5.55470 5.61357 5.70921 5.80017 5.84190 5.85003 5.98967 6.07961 6.17445 6.38117 6.74464 6.91532 6.97710 7.11819 7.40228 7.47120 7.57782 7.88948 8.19365 8.30852 8.87391 9.05740 9.53551 11.00600 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.003461 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.957761 B = 8088.993967 C = 9644.688979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.247 3.753 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.510 3.490 16 O -0.510 6.510 17 C 0.022 3.978 18 N -0.478 5.478 19 C 0.043 3.957 20 C -0.130 4.130 21 C -0.108 4.108 22 C 0.048 3.952 23 H 0.070 0.930 24 C 0.248 3.752 25 O -0.346 6.346 26 C 0.010 3.990 27 C 0.022 3.978 28 O -0.385 6.385 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.263 0.737 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 11.965 -17.899 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.009 4.009 5 N -0.333 5.333 6 C 0.128 3.872 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.295 3.705 16 O -0.384 6.384 17 C -0.109 4.109 18 N -0.203 5.203 19 C -0.085 4.085 20 C -0.169 4.169 21 C -0.146 4.146 22 C -0.060 4.060 23 H 0.087 0.913 24 C 0.153 3.847 25 O -0.265 6.265 26 C -0.067 4.067 27 C -0.055 4.055 28 O -0.305 6.305 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.126 0.874 47 H 0.116 0.884 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.304 11.483 -17.907 21.924 hybrid contribution -0.152 0.659 1.347 1.507 sum -5.456 12.142 -16.560 21.247 Atomic orbital electron populations 1.81205 1.13054 1.09103 1.08992 1.29129 0.95121 0.92915 0.92920 1.19919 0.81276 1.05033 1.03025 1.21292 0.82488 0.98077 0.99028 1.48220 1.04642 1.37847 1.42631 1.19318 0.92621 0.86917 0.88352 1.21410 1.36672 1.01170 0.97380 0.92494 1.24911 0.95335 0.94873 0.98849 1.69923 1.38285 1.10690 1.34305 0.86531 0.77693 0.79618 0.83781 1.20702 1.21107 1.19924 1.20064 0.88261 0.81702 0.80482 1.90693 1.13460 1.68694 1.65560 1.22391 0.94581 0.96167 0.97789 1.64445 1.25298 1.15631 1.14962 1.22881 1.01272 0.91373 0.92924 1.22422 1.01723 0.97068 0.95648 1.22345 0.98133 0.96435 0.97683 1.23223 0.97437 0.93086 0.92302 0.91264 1.23806 0.83516 0.88708 0.88713 1.89464 1.35387 1.83965 1.17690 1.24407 1.02178 0.96430 0.83661 1.24188 0.92816 0.98342 0.90142 1.88862 1.45638 1.64695 1.31331 0.87641 0.86407 0.88791 0.90914 0.94830 0.93521 0.92694 0.92327 0.88693 0.88519 0.93960 0.91769 0.90866 0.91221 0.90227 0.90137 0.90816 0.87439 0.88440 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.59 18.54 42.15 0.78 -5.81 16 2 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 3 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 4 C 0.12 1.58 5.19 -4.04 -0.02 1.56 16 5 N -0.60 -11.03 2.46 -175.06 -0.43 -11.46 16 6 C 0.25 5.86 5.16 -5.20 -0.03 5.83 16 7 C -0.53 -14.08 9.39 -34.44 -0.32 -14.40 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 11 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 C 0.51 9.54 7.37 -10.98 -0.08 9.46 16 16 O -0.51 -11.98 14.62 5.56 0.08 -11.90 16 17 C 0.02 0.31 3.90 -4.97 -0.02 0.29 16 18 N -0.48 -6.91 4.54 -223.83 -1.02 -7.92 16 19 C 0.04 0.63 5.65 -2.76 -0.02 0.61 16 20 C -0.13 -1.48 6.93 -25.37 -0.18 -1.66 16 21 C -0.11 -1.17 6.20 -24.87 -0.15 -1.32 16 22 C 0.05 0.57 2.45 -65.63 -0.16 0.41 16 23 H 0.07 0.76 8.02 -51.93 -0.42 0.35 16 24 C 0.25 2.78 3.82 37.16 0.14 2.92 16 25 O -0.35 -4.21 10.33 -59.04 -0.61 -4.82 16 26 C 0.01 0.08 7.95 38.17 0.30 0.38 16 27 C 0.02 0.16 8.07 38.17 0.31 0.46 16 28 O -0.38 -3.97 10.95 -59.04 -0.65 -4.61 16 29 H 0.11 0.92 7.39 -51.93 -0.38 0.54 16 30 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.07 0.82 6.29 -51.93 -0.33 0.49 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.06 0.72 6.88 -51.93 -0.36 0.37 16 37 H 0.10 1.09 6.66 -51.93 -0.35 0.74 16 38 H 0.10 1.70 7.33 -51.93 -0.38 1.32 16 39 H 0.04 0.62 7.63 -51.93 -0.40 0.23 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.91 7.35 -51.93 -0.38 0.53 16 44 H 0.08 0.87 7.50 -51.93 -0.39 0.48 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -34.20 394.45 -8.53 -42.73 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.53 Total: -1.33 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.82 Total: 7.77 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.07 Total: -50.02 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.17 Total: -21.33 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.20 -8.53 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933910489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.602 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds