Wall clock time and date at job start Sat Apr 11 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46843 * 227.68218 * 3 2 1 5 5 N 1.46500 * 109.47018 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00684 * 270.00382 * 5 4 3 7 7 C 1.50699 * 109.47188 * 270.00043 * 6 5 4 8 8 H 1.07997 * 119.99775 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00206 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99688 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00394 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47012 * 89.99936 * 11 9 7 13 13 H 1.48498 * 109.47449 * 210.00648 * 11 9 7 14 14 H 1.48505 * 109.46832 * 330.00731 * 11 9 7 15 15 C 1.34785 * 119.99695 * 90.00393 * 5 4 3 16 16 O 1.21283 * 119.99905 * 180.02562 * 15 5 4 17 17 C 1.50703 * 119.99967 * 359.97438 * 15 5 4 18 18 N 1.46900 * 109.46719 * 174.41182 * 17 15 5 19 19 C 1.47901 * 111.00245 * 293.94783 * 18 17 15 20 20 C 1.53992 * 107.22872 * 214.25738 * 19 18 17 21 21 C 1.54601 * 105.13856 * 1.12738 * 20 19 18 22 22 C 1.48812 * 111.18047 * 176.61357 * 18 17 15 23 23 H 1.08997 * 110.66232 * 41.00521 * 22 18 17 24 24 C 1.53003 * 110.69863 * 278.02443 * 22 18 17 25 25 O 1.43748 * 109.62966 * 303.93540 * 24 22 18 26 26 C 1.44792 * 104.81682 * 215.80808 * 25 24 22 27 27 C 1.54914 * 101.71592 * 36.10643 * 26 25 24 28 28 O 1.43371 * 109.63142 * 184.57381 * 24 22 18 29 29 H 1.09000 * 109.46600 * 107.68543 * 3 2 1 30 30 H 1.08993 * 109.47476 * 347.68637 * 3 2 1 31 31 H 1.09000 * 109.47257 * 60.00727 * 4 3 2 32 32 H 1.09002 * 109.47615 * 300.00258 * 4 3 2 33 33 H 1.09005 * 109.46792 * 29.99637 * 6 5 4 34 34 H 1.08993 * 109.47617 * 149.99771 * 6 5 4 35 35 H 0.97005 * 119.99564 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.47083 * 54.41387 * 17 15 5 37 37 H 1.08996 * 109.46935 * 294.41221 * 17 15 5 38 38 H 1.09003 * 109.91225 * 94.80859 * 19 18 17 39 39 H 1.09001 * 109.91473 * 333.71228 * 19 18 17 40 40 H 1.08996 * 110.30904 * 120.04092 * 20 19 18 41 41 H 1.08998 * 110.31107 * 242.11812 * 20 19 18 42 42 H 1.08998 * 110.72294 * 140.31491 * 21 20 19 43 43 H 1.08994 * 110.72593 * 263.42476 * 21 20 19 44 44 H 1.08996 * 109.62671 * 64.18363 * 24 22 18 45 45 H 1.09001 * 110.97642 * 278.00140 * 26 25 24 46 46 H 1.08991 * 110.97549 * 154.21467 * 26 25 24 47 47 H 1.09002 * 110.69188 * 206.04030 * 27 26 25 48 48 H 1.08994 * 110.69734 * 82.83779 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9720 1.0666 5 7 4.5825 0.9723 1.0671 6 6 5.3150 0.0344 1.9215 7 6 5.5657 0.6694 3.2649 8 1 5.2149 1.6715 3.4624 9 6 6.2430 -0.0289 4.2419 10 7 6.6706 -1.2491 4.0012 11 14 6.5544 0.7585 5.9070 12 1 5.4241 0.4502 6.8195 13 1 7.8144 0.2214 6.4807 14 1 6.6721 2.2299 5.7445 15 6 5.2564 1.8354 0.2813 16 8 6.4693 1.8353 0.2813 17 6 4.5030 2.7999 -0.5981 18 7 5.4519 3.7140 -1.2475 19 6 6.1122 4.5871 -0.2529 20 6 6.3460 5.9515 -0.9276 21 6 5.7539 5.8061 -2.3483 22 6 4.7554 4.6321 -2.1890 23 1 3.8158 4.9816 -1.7611 24 6 4.5114 3.9445 -3.5339 25 8 5.7597 3.4735 -4.0689 26 6 5.6425 3.6585 -5.5002 27 6 4.8333 4.9770 -5.5817 28 8 3.9373 4.8801 -4.4562 29 1 2.9711 0.3130 -0.9791 30 1 2.9718 -1.0031 0.2191 31 1 2.7544 0.6597 2.0457 32 1 2.7537 1.9759 0.8475 33 1 4.7260 -0.8734 2.0529 34 1 6.2675 -0.2150 1.4541 35 1 7.1474 -1.7403 4.6885 36 1 3.8028 3.3740 0.0088 37 1 3.9542 2.2450 -1.3590 38 1 7.0659 4.1529 0.0471 39 1 5.4693 4.7092 0.6188 40 1 5.8269 6.7381 -0.3801 41 1 7.4126 6.1692 -0.9812 42 1 5.2340 6.7172 -2.6445 43 1 6.5340 5.5576 -3.0677 44 1 3.8332 3.1023 -3.3968 45 1 5.0934 2.8347 -5.9564 46 1 6.6237 3.7736 -5.9604 47 1 4.2741 5.0285 -6.5159 48 1 5.4911 5.8397 -5.4773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933910489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:02:31 Heat of formation + Delta-G solvation = -101.311216 kcal Electronic energy + Delta-G solvation = -30441.428047 eV Core-core repulsion = 26303.269650 eV Total energy + Delta-G solvation = -4138.158397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58988 -40.77712 -39.09165 -37.93153 -36.60965 -35.87317 -34.88379 -33.26225 -32.13550 -31.95887 -29.61750 -29.34522 -27.35559 -25.33840 -25.25309 -24.29173 -23.93068 -22.00275 -21.27133 -19.82538 -18.81814 -18.33169 -18.23718 -17.83739 -17.53777 -17.45151 -16.97843 -16.49463 -16.26123 -15.97913 -15.81935 -15.58058 -15.16182 -14.95898 -14.62816 -14.51888 -14.30082 -14.17447 -13.82928 -13.72376 -13.56500 -13.54069 -13.41173 -13.24441 -13.04680 -12.94540 -12.71388 -12.58237 -12.48911 -12.27704 -12.21491 -12.17362 -12.09151 -11.81752 -11.65558 -11.47581 -11.01777 -10.61407 -10.57487 -10.38834 -9.43770 -9.30262 -8.16859 -6.29120 1.39245 1.41758 1.50951 1.69104 1.83880 1.93126 2.18234 2.41297 2.51976 2.92310 3.09233 3.15193 3.30501 3.57659 3.69472 3.79301 3.88965 4.00928 4.03210 4.11989 4.12888 4.20699 4.29477 4.30934 4.35115 4.43668 4.44138 4.59916 4.68844 4.70225 4.81503 4.84073 4.88662 4.98292 5.05017 5.05418 5.08870 5.12449 5.23010 5.32503 5.36063 5.62973 5.85526 5.89328 5.95625 6.14845 6.25550 6.60234 6.78107 6.84393 7.36581 7.59334 8.89762 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.003461 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.957761 B = 8088.993967 C = 9644.688979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.114 3.886 5 N -0.600 5.600 6 C 0.263 3.737 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.504 3.496 16 O -0.569 6.569 17 C 0.034 3.966 18 N -0.500 5.500 19 C 0.044 3.956 20 C -0.124 4.124 21 C -0.101 4.101 22 C 0.050 3.950 23 H 0.083 0.917 24 C 0.249 3.751 25 O -0.378 6.378 26 C 0.005 3.995 27 C 0.020 3.980 28 O -0.395 6.395 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.033 0.967 34 H 0.002 0.998 35 H 0.265 0.735 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.054 0.946 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.568 13.733 -19.148 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.011 4.011 5 N -0.332 5.332 6 C 0.141 3.859 7 C -0.577 4.577 8 H 0.070 0.930 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.783 3.217 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.292 3.708 16 O -0.446 6.446 17 C -0.097 4.097 18 N -0.225 5.225 19 C -0.084 4.084 20 C -0.162 4.162 21 C -0.139 4.139 22 C -0.059 4.059 23 H 0.101 0.899 24 C 0.153 3.847 25 O -0.298 6.298 26 C -0.071 4.071 27 C -0.056 4.056 28 O -0.315 6.315 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.144 0.856 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.166 13.265 -19.181 24.397 hybrid contribution 0.455 0.100 1.665 1.729 sum -6.711 13.365 -17.516 23.032 Atomic orbital electron populations 1.81249 1.14324 1.10512 1.10488 1.29119 0.94895 0.91578 0.91531 1.19830 0.80154 1.04498 1.03443 1.21513 0.79186 1.00654 0.99756 1.48093 1.06644 1.36810 1.41673 1.18757 0.91381 0.87968 0.87748 1.21737 1.36332 1.00941 0.98683 0.92964 1.25724 0.95247 0.95387 1.02473 1.70032 1.39153 1.11948 1.35455 0.85564 0.77850 0.78504 0.79783 1.19209 1.21034 1.19902 1.20980 0.87889 0.81672 0.80281 1.90672 1.16268 1.70260 1.67442 1.22348 0.94039 0.95423 0.97929 1.64326 1.26437 1.16507 1.15279 1.22748 0.99269 0.92954 0.93462 1.22388 1.02145 0.95541 0.96103 1.22314 0.97822 0.96995 0.96760 1.23307 0.97820 0.92710 0.92032 0.89883 1.23772 0.83384 0.88955 0.88577 1.89437 1.36089 1.84250 1.20052 1.24640 1.03412 0.97221 0.81832 1.24391 0.92842 0.98123 0.90207 1.88843 1.46216 1.64510 1.31961 0.84786 0.86166 0.89752 0.87852 0.94857 0.98023 0.92613 0.89917 0.85561 0.92763 0.94452 0.89875 0.90938 0.89202 0.91195 0.89697 0.89857 0.86057 0.85991 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.51 18.54 20.01 0.37 -13.14 16 2 C 0.25 5.38 15.43 89.44 1.38 6.76 16 3 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 4 C 0.11 2.82 5.19 86.38 0.45 3.27 16 5 N -0.60 -21.98 2.46 -826.15 -2.03 -24.01 16 6 C 0.26 12.88 5.16 85.63 0.44 13.32 16 7 C -0.54 -29.35 9.39 25.60 0.24 -29.11 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 11 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 15 C 0.50 18.93 7.37 87.66 0.65 19.57 16 16 O -0.57 -27.97 14.62 -3.04 -0.04 -28.01 16 17 C 0.03 0.87 3.90 85.56 0.33 1.20 16 18 N -0.50 -13.96 4.54 -862.05 -3.91 -17.87 16 19 C 0.04 1.28 5.65 86.45 0.49 1.77 16 20 C -0.12 -2.67 6.93 31.47 0.22 -2.45 16 21 C -0.10 -1.97 6.20 31.80 0.20 -1.78 16 22 C 0.05 1.05 2.45 45.21 0.11 1.16 16 23 H 0.08 1.53 8.02 -2.39 -0.02 1.51 16 24 C 0.25 4.98 3.82 71.98 0.27 5.25 16 25 O -0.38 -8.67 10.33 -126.22 -1.30 -9.97 16 26 C 0.00 0.07 7.95 72.64 0.58 0.64 16 27 C 0.02 0.23 8.07 72.64 0.59 0.82 16 28 O -0.39 -6.99 10.95 -126.22 -1.38 -8.37 16 29 H 0.13 1.83 7.39 -2.39 -0.02 1.81 16 30 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 32 H 0.10 1.97 6.29 -2.39 -0.02 1.95 16 33 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 34 H 0.00 0.09 7.42 -2.39 -0.02 0.08 16 35 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 36 H 0.08 1.76 6.88 -2.39 -0.02 1.75 16 37 H 0.13 2.45 6.66 -2.39 -0.02 2.43 16 38 H 0.05 2.04 7.33 -2.39 -0.02 2.02 16 39 H 0.04 1.10 7.63 -2.39 -0.02 1.08 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.51 7.35 -2.39 -0.02 1.49 16 44 H 0.09 1.58 7.50 -2.39 -0.02 1.57 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -78.14 394.45 1.55 -76.58 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.96 Total: 11.76 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 6.58 Total: 20.96 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -5.28 Total: -109.00 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.73 Total: -46.36 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -78.14 1.55 -76.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933910489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.729 kcal (2) G-P(sol) polarization free energy of solvation -78.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds