Wall clock time and date at job start Sat Apr 11 2020 05:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48496 * 109.47211 * 240.00021 * 3 2 1 5 5 H 1.48502 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47022 * 119.99651 * 3 2 1 7 7 C 1.38813 * 119.99599 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99558 * 195.73408 * 7 2 1 9 9 N 1.36937 * 120.00199 * 15.73817 * 7 2 1 10 10 C 1.47171 * 121.07455 * 207.44993 * 9 7 2 11 11 C 1.53282 * 108.52451 * 231.56369 * 10 9 7 12 12 O 1.43108 * 109.22234 * 306.92768 * 11 10 9 13 13 C 1.41872 * 114.44060 * 60.87421 * 12 11 10 14 14 C 1.54384 * 110.71428 * 176.93064 * 13 12 11 15 15 C 1.54465 * 102.87173 * 276.30552 * 14 13 12 16 16 N 1.47082 * 107.29668 * 338.50415 * 15 14 13 17 17 C 1.34768 * 125.62833 * 179.00905 * 16 15 14 18 18 O 1.21287 * 120.00268 * 185.08891 * 17 16 15 19 19 C 1.50700 * 120.00373 * 5.09397 * 17 16 15 20 20 H 1.09000 * 109.59863 * 334.29763 * 19 17 16 21 21 C 1.53346 * 109.60705 * 213.81101 * 19 17 16 22 22 C 1.53079 * 108.41493 * 172.69683 * 21 19 17 23 23 C 1.50167 * 109.89093 * 48.91153 * 22 21 19 24 24 O 1.21285 * 118.25196 * 162.44366 * 23 22 21 25 25 N 1.33355 * 123.51045 * 342.41550 * 23 22 21 26 26 C 1.45754 * 124.10504 * 2.20745 * 25 23 22 27 27 C 1.47579 * 108.73853 * 359.01187 * 16 15 14 28 28 C 1.47322 * 121.07432 * 27.72703 * 9 7 2 29 29 H 0.96998 * 119.99846 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.62629 * 351.27188 * 10 9 7 31 31 H 1.08992 * 109.62830 * 111.84715 * 10 9 7 32 32 H 1.09002 * 109.50781 * 187.00321 * 11 10 9 33 33 H 1.09000 * 109.51379 * 66.85166 * 11 10 9 34 34 H 1.08994 * 110.73411 * 34.65041 * 14 13 12 35 35 H 1.09005 * 110.73063 * 157.78427 * 14 13 12 36 36 H 1.08999 * 109.87470 * 97.93719 * 15 14 13 37 37 H 1.09005 * 109.87542 * 219.08221 * 15 14 13 38 38 H 1.09004 * 109.66922 * 292.44202 * 21 19 17 39 39 H 1.08998 * 109.67299 * 52.96906 * 21 19 17 40 40 H 1.08999 * 109.39730 * 288.78247 * 22 21 19 41 41 H 1.09001 * 109.40192 * 169.03893 * 22 21 19 42 42 H 0.97000 * 117.95289 * 182.21902 * 25 23 22 43 43 H 1.09002 * 109.30039 * 220.62873 * 26 25 23 44 44 H 1.08999 * 109.30573 * 101.25388 * 26 25 23 45 45 H 1.08994 * 110.37635 * 264.47976 * 27 16 15 46 46 H 1.09008 * 110.36861 * 142.14050 * 27 16 15 47 47 H 1.09001 * 109.63238 * 250.29571 * 28 9 7 48 48 H 1.08992 * 109.63569 * 10.70375 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0599 -1.2196 0.2542 9 7 1.3640 -2.3660 -0.3206 10 6 1.8196 -3.6599 0.2125 11 6 1.9872 -4.6366 -0.9568 12 8 0.7764 -4.6716 -1.7188 13 6 0.4046 -3.4262 -2.2876 14 6 -0.8664 -3.5778 -3.1508 15 6 -0.3064 -4.0666 -4.5049 16 7 1.1117 -3.6799 -4.5568 17 6 1.9604 -3.9427 -5.5702 18 8 3.1347 -3.6569 -5.4674 19 6 1.4506 -4.5915 -6.8312 20 1 0.5559 -5.1725 -6.6074 21 6 2.5329 -5.5102 -7.4110 22 6 1.9282 -6.2917 -8.5802 23 6 1.2108 -5.3521 -9.5061 24 8 0.9564 -5.7350 -10.6285 25 7 0.8378 -4.1194 -9.1603 26 6 1.1178 -3.5142 -7.8642 27 6 1.4517 -2.9567 -3.3161 28 6 0.1939 -2.3640 -1.2158 29 1 -0.4850 0.8400 0.0004 30 1 2.7749 -3.5303 0.7213 31 1 1.0793 -4.0490 0.9114 32 1 2.2035 -5.6328 -0.5709 33 1 2.8082 -4.3056 -1.5929 34 1 -1.5387 -4.3201 -2.7207 35 1 -1.3731 -2.6192 -3.2631 36 1 -0.3980 -5.1505 -4.5742 37 1 -0.8497 -3.5936 -5.3230 38 1 3.3719 -4.9109 -7.7646 39 1 2.8749 -6.2043 -6.6434 40 1 1.2241 -7.0300 -8.1965 41 1 2.7233 -6.8005 -9.1253 42 1 0.3494 -3.5925 -9.8120 43 1 0.2438 -2.9540 -7.5318 44 1 1.9634 -2.8332 -7.9596 45 1 1.3756 -1.8805 -3.4711 46 1 2.4554 -3.2232 -2.9846 47 1 -0.7051 -2.5939 -0.6439 48 1 0.0911 -1.3842 -1.6819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972444936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:03 Heat of formation + Delta-G solvation = -84.872948 kcal Electronic energy + Delta-G solvation = -30964.984721 eV Core-core repulsion = 26827.539141 eV Total energy + Delta-G solvation = -4137.445580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -40.95752 -40.06779 -38.81418 -36.52425 -36.13549 -34.51756 -33.35760 -31.97932 -31.32051 -30.26790 -29.19309 -27.66207 -25.98153 -24.99777 -23.74019 -23.34707 -22.79845 -21.17735 -20.19295 -18.89079 -18.83296 -17.88094 -17.07325 -16.98100 -16.55024 -16.15085 -15.76632 -15.33591 -15.10739 -14.81174 -14.45749 -14.37341 -14.35863 -14.24561 -13.75875 -13.57801 -13.43377 -13.20730 -12.98044 -12.80273 -12.26032 -12.15282 -12.12211 -11.97136 -11.50560 -11.48272 -11.27456 -11.17380 -11.12429 -10.89414 -10.81083 -10.52941 -10.35730 -10.06241 -10.02259 -9.80660 -9.61018 -9.44023 -9.14602 -8.61445 -8.49109 -6.80258 -5.91895 -3.35742 2.33359 2.48452 2.86888 3.08636 3.31554 3.37265 3.39258 4.08951 4.19091 4.25449 4.29715 4.37873 4.40247 4.73205 4.75763 4.90045 4.93914 5.01166 5.06883 5.17283 5.25880 5.32595 5.35244 5.42164 5.46800 5.57789 5.61086 5.75196 5.81383 5.82744 5.94772 5.99949 6.08544 6.15619 6.18164 6.37104 6.41510 6.43747 6.55943 6.72619 6.95526 6.95991 7.31735 7.56595 7.66408 7.83686 7.88758 8.14333 8.26009 9.04054 9.66321 10.24171 11.16801 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.003033 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.809894 B = 9230.505876 C = 9782.085732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.005 3.995 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.110 3.890 11 C 0.045 3.955 12 O -0.374 6.374 13 C 0.085 3.915 14 C -0.117 4.117 15 C 0.103 3.897 16 N -0.610 5.610 17 C 0.534 3.466 18 O -0.536 6.536 19 C -0.121 4.121 20 H 0.100 0.900 21 C -0.106 4.106 22 C -0.135 4.135 23 C 0.520 3.480 24 O -0.560 6.560 25 N -0.717 5.717 26 C 0.123 3.877 27 C 0.094 3.906 28 C 0.164 3.836 29 H 0.256 0.744 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.402 0.598 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.034 0.966 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 -9.827 -12.337 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.318 5.318 10 C -0.017 4.017 11 C -0.033 4.033 12 O -0.293 6.293 13 C 0.043 3.957 14 C -0.155 4.155 15 C -0.020 4.020 16 N -0.343 5.343 17 C 0.321 3.679 18 O -0.413 6.413 19 C -0.142 4.142 20 H 0.118 0.882 21 C -0.144 4.144 22 C -0.174 4.174 23 C 0.308 3.692 24 O -0.439 6.439 25 N -0.369 5.369 26 C -0.002 4.002 27 C -0.028 4.028 28 C 0.038 3.962 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.238 0.762 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.052 0.948 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.271 -10.018 -12.746 16.261 hybrid contribution 0.272 1.386 0.099 1.416 sum -0.999 -8.632 -12.647 15.345 Atomic orbital electron populations 1.69990 1.05208 1.25830 1.53805 1.25054 0.95361 0.98417 1.00530 0.86357 0.78952 0.83112 0.78319 1.20861 1.21518 1.20769 1.19131 0.92209 0.84205 1.42790 0.91452 1.44080 1.33823 1.01713 1.52210 1.21600 0.98764 0.87509 0.93785 1.23110 0.86599 0.99801 0.93788 1.87608 1.42494 1.30568 1.68585 1.22710 0.92459 0.87103 0.93446 1.22553 0.97052 1.03106 0.92769 1.22098 0.81280 0.99926 0.98697 1.48654 1.10894 1.55932 1.18809 1.19761 0.85511 0.79031 0.83585 1.90732 1.16188 1.53134 1.81238 1.21586 1.01261 0.97922 0.93479 0.88219 1.21540 0.97401 0.98187 0.97295 1.21680 1.01544 0.97891 0.96313 1.20240 0.78501 0.82284 0.88205 1.90767 1.56464 1.75066 1.21603 1.45417 1.58662 1.15876 1.16931 1.21207 1.02505 0.94517 0.81934 1.22788 1.01035 0.96521 0.82439 1.21148 0.89757 0.96274 0.89059 0.93415 0.91842 0.95458 0.89886 0.93471 0.89151 0.88845 0.91294 0.91569 0.89781 0.89812 0.87926 0.87588 0.76203 0.89750 0.90466 0.90187 0.89769 0.94794 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 11.21 55.49 0.62 -24.01 16 2 C 0.01 0.14 4.96 -17.43 -0.09 0.05 16 3 Si 0.90 20.85 29.58 -169.99 -5.03 15.82 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.61 9.65 -15.06 -0.15 -6.75 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.00 2.98 -172.25 -0.51 -14.52 16 10 C 0.11 2.20 6.71 -3.53 -0.02 2.17 16 11 C 0.04 0.78 6.79 37.30 0.25 1.03 16 12 O -0.37 -6.68 10.27 -35.22 -0.36 -7.04 16 13 C 0.08 1.47 0.83 -89.64 -0.07 1.40 16 14 C -0.12 -1.53 6.12 -25.24 -0.15 -1.68 16 15 C 0.10 1.13 6.01 -2.96 -0.02 1.11 16 16 N -0.61 -8.51 3.33 -170.76 -0.57 -9.07 16 17 C 0.53 7.29 6.84 -10.99 -0.08 7.21 16 18 O -0.54 -9.43 16.66 5.55 0.09 -9.34 16 19 C -0.12 -1.12 2.29 -91.63 -0.21 -1.33 16 20 H 0.10 0.77 6.95 -51.93 -0.36 0.41 16 21 C -0.11 -0.94 4.85 -26.51 -0.13 -1.07 16 22 C -0.13 -1.07 6.03 -28.10 -0.17 -1.24 16 23 C 0.52 5.42 7.71 -11.88 -0.09 5.32 16 24 O -0.56 -8.03 17.78 5.55 0.10 -7.93 16 25 N -0.72 -5.99 5.45 -61.39 -0.33 -6.32 16 26 C 0.12 0.99 6.46 -4.49 -0.03 0.96 16 27 C 0.09 1.63 5.88 -2.88 -0.02 1.62 16 28 C 0.16 3.55 4.05 -3.92 -0.02 3.53 16 29 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.06 1.22 7.96 -51.92 -0.41 0.81 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 0.85 6.27 -51.93 -0.33 0.53 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.17 7.99 -51.93 -0.42 0.75 16 36 H 0.07 0.68 7.92 -51.93 -0.41 0.26 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.40 2.92 8.80 -40.82 -0.36 2.56 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 45 H 0.08 1.49 7.82 -51.93 -0.41 1.09 16 46 H 0.08 1.67 5.98 -51.92 -0.31 1.36 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -32.77 375.18 -8.84 -41.61 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.51 Total: 2.82 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -0.99 Total: 12.33 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.80 Total: -53.92 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.17 Total: -24.31 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.77 -8.84 -41.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972444936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.265 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds