Wall clock time and date at job start Sat Apr 11 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00028 * 2 1 4 4 H 1.48501 * 109.47068 * 271.98840 * 3 2 1 5 5 H 1.48496 * 109.47037 * 31.98823 * 3 2 1 6 6 H 1.48499 * 109.47314 * 151.98657 * 3 2 1 7 7 C 1.38814 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99451 * 339.46453 * 7 2 1 9 9 N 1.36939 * 120.00342 * 159.46351 * 7 2 1 10 10 C 1.47182 * 121.06019 * 333.67969 * 9 7 2 11 11 C 1.53291 * 108.69385 * 231.19714 * 10 9 7 12 12 O 1.43101 * 109.23516 * 307.02926 * 11 10 9 13 13 C 1.42068 * 114.30839 * 61.17800 * 12 11 10 14 14 C 1.54516 * 110.33453 * 61.88516 * 13 12 11 15 15 C 1.55020 * 101.51442 * 83.95008 * 14 13 12 16 16 N 1.47480 * 104.90606 * 36.37260 * 15 14 13 17 17 C 1.34778 * 125.65971 * 155.97502 * 16 15 14 18 18 O 1.21277 * 120.00056 * 179.97438 * 17 16 15 19 19 C 1.50700 * 120.00001 * 359.96785 * 17 16 15 20 20 C 1.53001 * 109.47418 * 180.02562 * 19 17 16 21 21 H 1.09009 * 110.21158 * 53.07162 * 20 19 17 22 22 C 1.54478 * 110.24814 * 175.00190 * 20 19 17 23 23 C 1.54624 * 101.76453 * 93.58839 * 22 20 19 24 24 C 1.51279 * 104.19559 * 24.79614 * 23 22 20 25 25 O 1.21284 * 124.94290 * 163.78534 * 24 23 22 26 26 N 1.34418 * 110.11877 * 343.75066 * 24 23 22 27 27 C 1.47192 * 108.68075 * 335.96815 * 16 15 14 28 28 C 1.47719 * 121.30932 * 153.85380 * 9 7 2 29 29 H 0.96993 * 119.99959 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.62784 * 111.38353 * 10 9 7 31 31 H 1.09002 * 109.62154 * 351.00472 * 10 9 7 32 32 H 1.09003 * 109.51198 * 66.95368 * 11 10 9 33 33 H 1.09001 * 109.50794 * 187.04795 * 11 10 9 34 34 H 1.09000 * 111.02031 * 202.01055 * 14 13 12 35 35 H 1.08999 * 111.01878 * 325.86031 * 14 13 12 36 36 H 1.08999 * 110.35253 * 155.22549 * 15 14 13 37 37 H 1.08995 * 110.35655 * 277.51880 * 15 14 13 38 38 H 1.08992 * 109.47452 * 300.00503 * 19 17 16 39 39 H 1.09007 * 109.47017 * 60.00322 * 19 17 16 40 40 H 1.08997 * 110.97085 * 211.70609 * 22 20 19 41 41 H 1.09003 * 110.97135 * 335.42993 * 22 20 19 42 42 H 1.08997 * 110.48698 * 143.47770 * 23 22 20 43 43 H 1.09001 * 110.48817 * 266.12189 * 23 22 20 44 44 H 0.96998 * 124.35134 * 179.59532 * 26 24 23 45 45 H 1.09000 * 109.91319 * 242.15736 * 27 16 15 46 46 H 1.09010 * 109.90642 * 120.88557 * 27 16 15 47 47 H 1.09008 * 109.61640 * 10.77990 * 28 9 7 48 48 H 1.08994 * 109.67739 * 250.30272 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4556 2.0707 -1.3992 5 1 1.4693 2.6401 0.7417 6 1 3.5681 1.4284 0.6576 7 6 2.0103 -1.2021 0.0005 8 1 1.5217 -2.1076 0.3291 9 7 3.3144 -1.2400 -0.4155 10 6 3.8367 -0.2473 -1.3683 11 6 4.5338 -0.9870 -2.5158 12 8 5.4993 -1.8939 -1.9744 13 6 4.9508 -2.8970 -1.1310 14 6 3.9661 -3.7855 -1.9237 15 6 4.9304 -4.8055 -2.5816 16 7 5.9775 -5.0441 -1.5708 17 6 6.7504 -6.1449 -1.4849 18 8 7.5841 -6.2336 -0.6086 19 6 6.5786 -7.2656 -2.4776 20 6 7.5702 -8.3862 -2.1585 21 1 7.4764 -8.6862 -1.1147 22 6 7.3258 -9.5967 -3.0866 23 6 8.3187 -9.3164 -4.2383 24 6 9.3853 -8.4497 -3.6060 25 8 10.4810 -8.2389 -4.0812 26 7 8.9416 -7.9467 -2.4411 27 6 6.0385 -3.8805 -0.6714 28 6 4.2456 -2.2783 0.0713 29 1 -0.4850 0.8400 -0.0004 30 1 4.5514 0.4033 -0.8644 31 1 3.0141 0.3490 -1.7633 32 1 3.7949 -1.5435 -3.0923 33 1 5.0332 -0.2662 -3.1633 34 1 3.2652 -4.2853 -1.2550 35 1 3.4363 -3.2047 -2.6786 36 1 4.4043 -5.7328 -2.8084 37 1 5.3669 -4.3849 -3.4874 38 1 5.5615 -7.6525 -2.4164 39 1 6.7648 -6.8910 -3.4843 40 1 7.5687 -10.5313 -2.5810 41 1 6.2984 -9.6081 -3.4506 42 1 8.7512 -10.2476 -4.6042 43 1 7.8227 -8.7811 -5.0479 44 1 9.4611 -7.3675 -1.8618 45 1 7.0187 -3.4089 -0.7405 46 1 5.8459 -4.1940 0.3547 47 1 3.6886 -3.0477 0.6062 48 1 4.9817 -1.8281 0.7373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972593071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:21 Heat of formation + Delta-G solvation = -75.431088 kcal Electronic energy + Delta-G solvation = -30326.190224 eV Core-core repulsion = 26189.154074 eV Total energy + Delta-G solvation = -4137.036150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.99775 -40.29219 -38.96652 -36.92788 -36.31172 -34.71490 -32.28377 -31.63416 -31.54893 -30.81804 -29.88794 -27.96147 -26.65049 -25.35136 -23.61357 -22.97768 -21.89798 -21.41057 -20.76311 -19.54638 -19.13311 -17.84951 -17.26554 -17.01517 -16.69232 -16.23912 -15.90373 -15.66608 -15.20114 -15.09529 -14.66446 -14.42579 -14.17733 -14.04267 -13.81602 -13.75852 -13.37635 -13.23164 -13.04071 -12.95134 -12.65424 -12.56685 -12.46581 -12.14065 -11.96540 -11.67968 -11.64073 -11.39048 -11.29140 -11.16376 -10.86049 -10.47792 -10.35394 -10.13948 -10.00594 -9.80972 -9.61059 -9.49181 -9.40930 -8.76192 -8.66219 -7.12958 -6.07982 -3.45265 2.34095 2.46800 2.78311 3.13032 3.20981 3.40415 3.42971 3.86825 3.92876 4.04700 4.23496 4.35076 4.40839 4.57264 4.57789 4.61924 4.83703 4.89050 4.96603 5.01324 5.10564 5.22602 5.22894 5.26164 5.38110 5.40453 5.42201 5.48809 5.56656 5.60259 5.69427 5.73691 5.85319 5.98130 6.02493 6.10702 6.14981 6.25444 6.36585 6.37891 6.56866 6.59477 6.83912 7.37374 7.56240 7.72994 7.97222 8.03168 8.16684 8.73825 9.55829 9.92002 11.07429 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.002418 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.373722 B =11576.414516 C =11804.986410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.088 0.912 9 N -0.605 5.605 10 C 0.089 3.911 11 C 0.046 3.954 12 O -0.373 6.373 13 C 0.093 3.907 14 C -0.146 4.146 15 C 0.100 3.900 16 N -0.613 5.613 17 C 0.529 3.471 18 O -0.547 6.547 19 C -0.152 4.152 20 C 0.146 3.854 21 H 0.100 0.900 22 C -0.129 4.129 23 C -0.158 4.158 24 C 0.515 3.485 25 O -0.540 6.540 26 N -0.717 5.717 27 C 0.125 3.875 28 C 0.133 3.867 29 H 0.264 0.736 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.417 0.583 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.875 -17.134 -8.034 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.174 4.174 3 Si 0.713 3.287 4 H -0.216 1.216 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.388 4.388 8 H 0.106 0.894 9 N -0.330 5.330 10 C -0.037 4.037 11 C -0.032 4.032 12 O -0.292 6.292 13 C 0.051 3.949 14 C -0.184 4.184 15 C -0.022 4.022 16 N -0.347 5.347 17 C 0.318 3.682 18 O -0.425 6.425 19 C -0.193 4.193 20 C 0.039 3.961 21 H 0.118 0.882 22 C -0.166 4.166 23 C -0.198 4.198 24 C 0.301 3.699 25 O -0.417 6.417 26 N -0.373 5.373 27 C 0.002 3.998 28 C 0.007 3.993 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.257 0.743 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.888 -17.105 -7.890 21.757 hybrid contribution 0.093 1.561 0.272 1.587 sum 10.982 -15.544 -7.618 20.500 Atomic orbital electron populations 1.69813 1.05667 1.26740 1.52539 1.25236 0.95229 0.97583 0.99361 0.86991 0.80022 0.84601 0.77121 1.21573 1.22980 1.19558 1.18850 0.84182 0.94923 1.40880 0.89412 1.44463 1.08530 1.31460 1.48530 1.22025 0.97874 0.92786 0.91012 1.23166 0.91909 0.92052 0.96073 1.87713 1.34092 1.42352 1.64996 1.22289 0.92134 0.87846 0.92626 1.23217 0.97250 0.96896 1.01065 1.22448 0.88553 0.99552 0.91679 1.48587 1.36824 1.17633 1.31611 1.20169 0.80252 0.82198 0.85569 1.90688 1.35116 1.79968 1.36723 1.22207 1.02001 0.95071 1.00004 1.21389 0.81118 0.92418 1.01145 0.88237 1.22687 1.00705 0.97740 0.95507 1.22365 0.96636 1.01569 0.99278 1.20961 0.87620 0.80154 0.81189 1.90762 1.22590 1.62251 1.66101 1.46348 1.15991 1.51524 1.23410 1.21773 0.99640 0.84583 0.93781 1.21440 0.92710 0.92689 0.92489 0.92595 0.94773 0.89981 0.92559 0.89403 0.89396 0.88706 0.90617 0.91116 0.87341 0.88403 0.89394 0.88725 0.87979 0.87758 0.74343 0.90392 0.89753 0.90702 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.46 13.97 55.49 0.78 -25.69 16 2 C 0.03 0.70 5.25 -17.43 -0.09 0.60 16 3 Si 0.88 21.48 24.31 -169.99 -4.13 17.35 16 4 H -0.29 -6.69 6.58 56.52 0.37 -6.31 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.57 6.60 56.52 0.37 -6.20 16 7 C -0.26 -6.79 10.13 -15.06 -0.15 -6.94 16 8 H 0.09 2.43 8.06 -52.48 -0.42 2.00 16 9 N -0.60 -13.36 2.74 -171.82 -0.47 -13.83 16 10 C 0.09 1.82 4.37 -3.52 -0.02 1.80 16 11 C 0.05 0.76 6.76 37.31 0.25 1.01 16 12 O -0.37 -6.21 10.23 -35.23 -0.36 -6.57 16 13 C 0.09 1.43 0.83 -89.73 -0.07 1.35 16 14 C -0.15 -1.95 5.91 -24.87 -0.15 -2.10 16 15 C 0.10 1.03 6.69 -2.44 -0.02 1.02 16 16 N -0.61 -7.33 3.33 -170.68 -0.57 -7.90 16 17 C 0.53 6.04 7.75 -10.98 -0.09 5.95 16 18 O -0.55 -7.88 15.44 5.56 0.09 -7.80 16 19 C -0.15 -1.05 4.32 -27.88 -0.12 -1.17 16 20 C 0.15 0.98 3.00 -67.01 -0.20 0.78 16 21 H 0.10 0.70 7.91 -51.92 -0.41 0.29 16 22 C -0.13 -0.51 6.70 -25.10 -0.17 -0.68 16 23 C -0.16 -0.93 6.86 -26.75 -0.18 -1.11 16 24 C 0.51 5.43 8.43 -10.86 -0.09 5.34 16 25 O -0.54 -8.22 18.03 5.55 0.10 -8.12 16 26 N -0.72 -6.81 5.52 -52.76 -0.29 -7.10 16 27 C 0.12 1.74 6.24 -3.32 -0.02 1.71 16 28 C 0.13 2.43 5.28 -3.63 -0.02 2.41 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.03 0.72 6.95 -51.93 -0.36 0.36 16 31 H 0.08 1.81 4.59 -51.93 -0.24 1.57 16 32 H 0.06 0.90 6.13 -51.93 -0.32 0.58 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.20 7.86 -51.93 -0.41 0.79 16 35 H 0.09 1.36 5.98 -51.93 -0.31 1.04 16 36 H 0.08 0.57 7.48 -51.93 -0.39 0.18 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.11 0.48 7.80 -51.93 -0.41 0.07 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.19 7.86 -51.93 -0.41 -0.22 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.42 4.53 8.37 -40.82 -0.34 4.19 16 45 H 0.08 1.16 8.06 -51.93 -0.42 0.75 16 46 H 0.08 1.15 7.79 -51.92 -0.40 0.74 16 47 H 0.07 1.32 7.77 -51.92 -0.40 0.92 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -34.08 370.30 -7.81 -41.89 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.39 Total: 2.21 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -1.13 Total: 9.99 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.56 Total: -54.51 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.17 Total: -22.50 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.13 Total: 17.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.08 -7.81 -41.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972593071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.539 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds