Wall clock time and date at job start Sat Apr 11 2020 05:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99708 * 2 1 4 4 H 1.48510 * 109.46943 * 269.99901 * 3 2 1 5 5 H 1.48501 * 109.47359 * 29.99922 * 3 2 1 6 6 H 1.48500 * 109.47250 * 150.00066 * 3 2 1 7 7 C 1.38809 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00071 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.47367 * 125.58357 * 0.02562 * 9 7 2 11 11 C 1.54862 * 104.82070 * 204.68044 * 10 9 7 12 12 C 1.54914 * 101.76634 * 322.92169 * 11 10 9 13 13 N 1.46503 * 112.77908 * 273.55099 * 12 11 10 14 14 C 1.34775 * 120.00263 * 297.30438 * 13 12 11 15 15 O 1.21278 * 119.99856 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00155 * 179.97438 * 14 13 12 17 17 N 1.46495 * 109.47181 * 179.97438 * 16 14 13 18 18 C 1.46086 * 118.73047 * 90.00302 * 17 16 14 19 19 C 1.53017 * 109.92609 * 161.61804 * 18 17 16 20 20 O 1.43246 * 108.67050 * 49.16425 * 19 18 17 21 21 C 1.42964 * 112.98398 * 291.63370 * 20 19 18 22 22 C 1.33876 * 118.73044 * 269.72950 * 17 16 14 23 23 O 1.21282 * 118.82899 * 1.91001 * 22 17 16 24 24 C 1.53584 * 109.09387 * 148.11968 * 12 11 10 25 25 C 1.54221 * 106.71211 * 246.88563 * 24 12 11 26 26 C 1.54877 * 104.10022 * 24.96113 * 25 24 12 27 27 C 1.46988 * 125.57681 * 180.02562 * 9 7 2 28 28 H 1.08998 * 111.80999 * 300.94272 * 27 9 7 29 29 H 0.97001 * 120.00190 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.36543 * 323.50933 * 10 9 7 31 31 H 1.08991 * 110.37188 * 85.72922 * 10 9 7 32 32 H 1.09007 * 110.96802 * 204.80377 * 11 10 9 33 33 H 1.09001 * 110.97414 * 81.04554 * 11 10 9 34 34 H 0.96998 * 119.99642 * 117.30052 * 13 12 11 35 35 H 1.08997 * 109.47200 * 300.00391 * 16 14 13 36 36 H 1.09003 * 109.46644 * 59.99861 * 16 14 13 37 37 H 1.09006 * 109.39259 * 281.75873 * 18 17 16 38 38 H 1.09005 * 109.39824 * 41.47753 * 18 17 16 39 39 H 1.09003 * 109.60596 * 168.91351 * 19 18 17 40 40 H 1.08996 * 109.60428 * 289.40455 * 19 18 17 41 41 H 1.09003 * 109.41609 * 169.69914 * 21 20 19 42 42 H 1.08991 * 109.41999 * 289.56454 * 21 20 19 43 43 H 1.09002 * 110.01904 * 6.21518 * 24 12 11 44 44 H 1.08997 * 110.01967 * 127.56556 * 24 12 11 45 45 H 1.09003 * 110.49133 * 143.63442 * 25 24 12 46 46 H 1.08998 * 110.50015 * 266.30226 * 25 24 12 47 47 H 1.08998 * 110.65677 * 203.74976 * 26 25 24 48 48 H 1.09002 * 110.82120 * 80.68152 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4002 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1411 -2.5314 -0.0005 11 6 -0.4034 -3.9235 0.6250 12 6 0.7723 -4.7539 0.0522 13 7 0.4746 -5.3264 -1.2631 14 6 -0.5276 -6.2172 -1.3992 15 8 -1.1826 -6.5454 -0.4327 16 6 -0.8342 -6.8057 -2.7522 17 7 -1.9567 -7.7396 -2.6356 18 6 -3.3148 -7.2305 -2.8101 19 6 -4.2719 -8.3878 -3.1038 20 8 -4.0541 -9.4202 -2.1350 21 6 -2.7847 -10.0619 -2.2788 22 6 -1.6981 -9.0278 -2.3788 23 8 -0.5465 -9.3720 -2.2166 24 6 1.1752 -5.8263 1.0752 25 6 2.5890 -5.4585 1.5696 26 6 2.6834 -3.9298 1.3396 27 6 1.9334 -3.7263 0.0016 28 1 2.5753 -3.8803 -0.8658 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5990 -1.7504 0.6065 31 1 -0.5253 -2.4930 -1.0198 32 1 -1.3617 -4.3251 0.2952 33 1 -0.3551 -3.8778 1.7130 34 1 0.9987 -5.0641 -2.0360 35 1 -1.0966 -6.0062 -3.4451 36 1 0.0422 -7.3361 -3.1247 37 1 -3.6305 -6.7220 -1.8990 38 1 -3.3333 -6.5256 -3.6413 39 1 -5.3016 -8.0364 -3.0384 40 1 -4.0787 -8.7774 -4.1032 41 1 -2.6017 -10.7008 -1.4148 42 1 -2.7858 -10.6685 -3.1843 43 1 0.4758 -5.8261 1.9111 44 1 1.1894 -6.8076 0.6010 45 1 2.6959 -5.6930 2.6287 46 1 3.3459 -5.9802 0.9840 47 1 3.7239 -3.6182 1.2489 48 1 2.1888 -3.3857 2.1444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991067768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:46 Heat of formation + Delta-G solvation = -69.924560 kcal Electronic energy + Delta-G solvation = -31021.399918 eV Core-core repulsion = 26884.602549 eV Total energy + Delta-G solvation = -4136.797369 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03503 -39.97701 -38.19004 -37.76553 -35.45819 -34.24241 -33.39664 -31.49234 -30.71167 -29.98031 -29.07705 -26.72684 -26.62768 -25.41687 -24.12687 -23.83421 -21.43680 -20.00024 -19.87719 -19.08907 -18.77129 -17.97462 -17.29179 -17.19681 -16.97446 -16.05879 -15.73217 -15.64335 -15.00426 -14.79371 -14.75589 -14.54640 -14.05059 -13.70583 -13.64954 -13.51477 -13.25246 -13.03475 -12.83377 -12.30563 -12.17367 -12.03474 -11.77373 -11.62403 -11.54838 -11.16656 -10.99724 -10.86229 -10.84245 -10.65354 -10.50843 -10.16054 -10.09517 -9.95602 -9.83022 -9.69768 -9.65142 -9.53743 -8.82495 -8.67243 -8.52401 -6.86903 -5.66189 -3.09249 2.24059 2.49118 2.86745 3.37516 3.39430 3.43127 3.45009 3.51635 4.03349 4.43227 4.45995 4.60344 4.75292 4.81041 4.87108 4.97954 5.04858 5.11567 5.18199 5.21582 5.27447 5.35048 5.51660 5.53325 5.66278 5.84399 5.88578 5.91264 6.02534 6.10179 6.17298 6.30289 6.38270 6.42597 6.44548 6.56417 6.61802 6.78228 6.80504 7.00844 7.07716 7.15055 7.52215 7.63401 7.76041 7.84285 7.88353 8.35138 8.51283 9.20090 9.81065 10.45387 11.36342 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.003030 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.410339 B = 9239.391865 C =10133.300491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.913 3.087 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.153 3.847 11 C -0.140 4.140 12 C 0.162 3.838 13 N -0.704 5.704 14 C 0.499 3.501 15 O -0.528 6.528 16 C 0.089 3.911 17 N -0.584 5.584 18 C 0.078 3.922 19 C 0.046 3.954 20 O -0.368 6.368 21 C 0.054 3.946 22 C 0.492 3.508 23 O -0.539 6.539 24 C -0.110 4.110 25 C -0.124 4.124 26 C -0.128 4.128 27 C 0.161 3.839 28 H 0.046 0.954 29 H 0.251 0.749 30 H 0.107 0.893 31 H 0.008 0.992 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.399 0.601 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.063 0.937 41 H 0.131 0.869 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 -16.664 -7.973 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.029 3.971 11 C -0.179 4.179 12 C 0.076 3.924 13 N -0.354 5.354 14 C 0.283 3.717 15 O -0.404 6.404 16 C -0.038 4.038 17 N -0.317 5.317 18 C -0.045 4.045 19 C -0.031 4.031 20 O -0.286 6.286 21 C -0.025 4.025 22 C 0.280 3.720 23 O -0.417 6.417 24 C -0.149 4.149 25 C -0.163 4.163 26 C -0.168 4.168 27 C 0.053 3.947 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.149 0.851 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.132 -16.891 -7.047 19.302 hybrid contribution 0.899 1.233 -0.678 1.670 sum -5.232 -15.658 -7.725 18.228 Atomic orbital electron populations 1.69803 1.04867 1.24678 1.57584 1.24775 0.95679 0.97657 1.02499 0.86099 0.78563 0.83485 0.77492 1.21736 1.21716 1.20714 1.19040 0.90454 0.82317 1.42953 0.90523 1.44533 1.01801 0.99201 1.86480 1.21955 0.84392 0.92962 0.97811 1.23299 0.96649 0.97958 0.99992 1.21620 0.96822 0.92209 0.81756 1.45859 1.34623 1.43710 1.11253 1.20849 0.80431 0.79322 0.91135 1.90690 1.49491 1.60042 1.40129 1.21420 0.92245 0.94075 0.96042 1.46987 1.06863 1.07480 1.70329 1.22260 0.80942 0.97711 1.03606 1.23018 1.00433 0.87443 0.92230 1.88220 1.34254 1.51205 1.54911 1.22796 0.80888 0.93568 1.05284 1.20974 0.91273 0.83599 0.76146 1.90748 1.21719 1.79798 1.49400 1.22259 0.96615 0.97788 0.98275 1.22384 0.96440 0.97262 1.00182 1.22935 1.00345 0.93944 0.99581 1.21798 0.91699 0.85841 0.95339 0.93614 0.93790 0.87515 0.97418 0.91692 0.91464 0.76734 0.87373 0.86843 0.89784 0.89393 0.86486 0.91864 0.85136 0.89319 0.91365 0.92322 0.92274 0.92346 0.92385 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.07 55.49 0.56 -25.75 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -5.86 10.01 -15.06 -0.15 -6.01 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.53 3.03 -161.16 -0.49 -15.01 16 10 C 0.15 3.70 5.91 -2.59 -0.02 3.69 16 11 C -0.14 -2.87 5.75 -24.74 -0.14 -3.02 16 12 C 0.16 2.96 0.74 -129.38 -0.10 2.86 16 13 N -0.70 -11.08 5.24 -45.36 -0.24 -11.32 16 14 C 0.50 7.80 7.08 -10.99 -0.08 7.72 16 15 O -0.53 -10.06 14.30 5.56 0.08 -9.98 16 16 C 0.09 1.03 5.77 -5.20 -0.03 1.00 16 17 N -0.58 -6.73 2.32 -175.79 -0.41 -7.14 16 18 C 0.08 0.67 6.67 -4.26 -0.03 0.64 16 19 C 0.05 0.31 6.89 37.17 0.26 0.56 16 20 O -0.37 -3.57 10.86 -35.23 -0.38 -3.96 16 21 C 0.05 0.50 6.98 35.83 0.25 0.75 16 22 C 0.49 6.30 7.58 -11.56 -0.09 6.21 16 23 O -0.54 -8.78 16.38 5.56 0.09 -8.69 16 24 C -0.11 -1.91 5.26 -25.79 -0.14 -2.05 16 25 C -0.12 -1.97 6.84 -25.10 -0.17 -2.14 16 26 C -0.13 -2.36 6.22 -24.83 -0.15 -2.51 16 27 C 0.16 3.22 3.66 -65.62 -0.24 2.98 16 28 H 0.05 0.90 7.96 -51.93 -0.41 0.48 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.11 2.93 5.82 -51.93 -0.30 2.63 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 1.35 6.73 -51.92 -0.35 1.00 16 33 H 0.07 1.40 7.62 -51.93 -0.40 1.01 16 34 H 0.40 5.43 8.48 -40.82 -0.35 5.08 16 35 H 0.11 0.92 7.93 -51.93 -0.41 0.51 16 36 H 0.11 1.28 7.28 -51.93 -0.38 0.90 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.53 7.99 -51.93 -0.42 0.11 16 39 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 41 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.23 7.37 -51.93 -0.38 0.85 16 44 H 0.06 1.05 7.49 -51.93 -0.39 0.66 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -34.65 376.07 -8.61 -43.26 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.55 Total: 5.98 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -0.92 Total: 10.30 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.57 Total: -59.23 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.21 Total: -22.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.65 -8.61 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991067768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.660 kcal (2) G-P(sol) polarization free energy of solvation -34.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds