Wall clock time and date at job start Sat Apr 11 2020 05:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.49298 * 127.10598 * 359.41093 * 9 7 2 11 11 C 1.56327 * 106.45935 * 171.20640 * 10 9 7 12 12 C 1.52128 * 100.91473 * 336.91877 * 11 10 9 13 13 N 1.46493 * 111.49476 * 285.68060 * 12 11 10 14 14 C 1.34781 * 120.00172 * 288.52585 * 13 12 11 15 15 O 1.21284 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00378 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.86694 * 303.98683 * 16 14 13 18 18 C 1.54097 * 109.87900 * 64.99700 * 16 14 13 19 19 C 1.54804 * 104.18603 * 121.45578 * 18 16 14 20 20 C 1.54997 * 102.09408 * 20.87860 * 19 18 16 21 21 H 1.09004 * 110.61797 * 81.47849 * 20 19 18 22 22 C 1.50700 * 110.61937 * 204.47399 * 20 19 18 23 23 N 1.34777 * 120.00231 * 295.00242 * 22 20 19 24 24 O 1.21279 * 120.00313 * 114.99712 * 22 20 19 25 25 O 1.43748 * 109.87668 * 182.83088 * 16 14 13 26 26 C 1.51225 * 122.11515 * 150.98790 * 12 11 10 27 27 C 1.55692 * 104.60467 * 218.73282 * 26 12 11 28 28 C 1.56283 * 105.93770 * 7.25078 * 27 26 12 29 29 C 1.42709 * 127.10360 * 179.71911 * 9 7 2 30 30 H 1.09006 * 108.17081 * 103.46264 * 29 9 7 31 31 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.04583 * 290.59765 * 10 9 7 33 33 H 1.08998 * 110.04598 * 52.07486 * 10 9 7 34 34 H 1.09009 * 111.28402 * 218.92007 * 11 10 9 35 35 H 1.08998 * 110.94628 * 94.78501 * 11 10 9 36 36 H 0.97000 * 120.00425 * 108.51796 * 13 12 11 37 37 H 1.09001 * 110.48693 * 240.12936 * 18 16 14 38 38 H 1.09001 * 110.48819 * 2.78076 * 18 16 14 39 39 H 1.08999 * 110.90772 * 139.07945 * 19 18 16 40 40 H 1.09005 * 110.91251 * 262.68277 * 19 18 16 41 41 H 0.97003 * 120.00081 * 359.97438 * 23 22 20 42 42 H 0.97007 * 120.00042 * 179.97438 * 23 22 20 43 43 H 1.09001 * 110.41063 * 337.50861 * 26 12 11 44 44 H 1.08995 * 110.41094 * 99.95171 * 26 12 11 45 45 H 1.09006 * 110.15722 * 126.36768 * 27 26 12 46 46 H 1.08994 * 110.15908 * 248.06069 * 27 26 12 47 47 H 1.08999 * 110.97149 * 266.13860 * 28 27 26 48 48 H 1.08997 * 110.96951 * 142.37672 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1560 -2.5726 -0.0012 11 6 -0.4135 -4.0957 -0.2413 12 6 0.8803 -4.5013 -0.9312 13 7 0.9232 -4.0234 -2.3153 14 6 0.1327 -4.5896 -3.2486 15 8 -0.6139 -5.4951 -2.9426 16 6 0.1772 -4.0983 -4.6726 17 1 -0.0251 -3.0277 -4.7016 18 6 1.5623 -4.3867 -5.2833 19 6 1.2568 -5.2736 -6.5148 20 6 -0.2343 -4.9494 -6.7865 21 1 -0.3290 -4.0198 -7.3478 22 6 -0.8988 -6.0848 -7.5217 23 7 -0.5061 -6.3995 -8.7720 24 8 -1.7869 -6.7154 -6.9883 25 8 -0.7939 -4.8038 -5.4636 26 6 1.4461 -5.8994 -0.8211 27 6 2.9853 -5.6925 -0.7114 28 6 3.2025 -4.1507 -0.5771 29 6 1.8806 -3.7027 -0.0138 30 1 1.7908 -4.1150 0.9913 31 1 -0.4850 0.8401 0.0004 32 1 -0.5668 -2.2690 0.9617 33 1 -0.6084 -1.9879 -0.8021 34 1 -1.2730 -4.2539 -0.8929 35 1 -0.5374 -4.6238 0.7041 36 1 1.5205 -3.2993 -2.5602 37 1 2.0440 -3.4588 -5.5915 38 1 2.1885 -4.9247 -4.5716 39 1 1.8779 -4.9878 -7.3637 40 1 1.3882 -6.3291 -6.2763 41 1 0.2039 -5.8950 -9.1988 42 1 -0.9336 -7.1306 -9.2451 43 1 1.0646 -6.3946 0.0718 44 1 1.2030 -6.4791 -1.7115 45 1 3.3712 -6.2044 0.1702 46 1 3.4793 -6.0658 -1.6084 47 1 3.3859 -3.6963 -1.5508 48 1 4.0161 -3.9301 0.1140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992175150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:52 Heat of formation + Delta-G solvation = -73.768881 kcal Electronic energy + Delta-G solvation = -31294.123542 eV Core-core repulsion = 27157.159471 eV Total energy + Delta-G solvation = -4136.964071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.80764 -40.12816 -38.75648 -37.30215 -34.44120 -34.05974 -33.17381 -32.22460 -31.67510 -30.37491 -29.41768 -26.95142 -25.91651 -24.73128 -24.02808 -22.37564 -20.79084 -20.71965 -20.44115 -19.60047 -18.65573 -18.07686 -17.55202 -16.65040 -16.52420 -16.42046 -15.87485 -15.31597 -14.83435 -14.73199 -14.64407 -14.48632 -13.98050 -13.92537 -13.76609 -13.64645 -13.27514 -12.60079 -12.34540 -12.34072 -11.95720 -11.94608 -11.75413 -11.41623 -11.34908 -11.19121 -11.03515 -10.94023 -10.80684 -10.49795 -10.38804 -10.28695 -10.03198 -9.98590 -9.95377 -9.89178 -9.71077 -9.41933 -8.97447 -8.69722 -8.43368 -6.89433 -5.77549 -3.12759 2.36817 2.74515 3.04847 3.33829 3.40165 3.42409 3.46273 3.95976 4.19800 4.41851 4.47215 4.58770 4.62946 4.77633 4.87881 4.94108 5.18954 5.23103 5.28964 5.37846 5.42698 5.44949 5.59860 5.61103 5.72462 5.76134 5.83202 5.95129 5.98418 6.15399 6.26111 6.31711 6.38120 6.39435 6.44626 6.49600 6.57455 6.68048 6.82689 6.90687 7.01617 7.23108 7.50951 7.58901 7.75949 8.01148 8.07308 8.16889 8.73890 9.09841 9.76446 10.46099 11.34229 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.003534 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.000268 B = 7920.917610 C = 8723.353800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.584 5.584 10 C 0.178 3.822 11 C -0.140 4.140 12 C 0.135 3.865 13 N -0.688 5.688 14 C 0.512 3.488 15 O -0.523 6.523 16 C 0.056 3.944 17 H 0.100 0.900 18 C -0.144 4.144 19 C -0.141 4.141 20 C 0.053 3.947 21 H 0.100 0.900 22 C 0.522 3.478 23 N -0.854 5.854 24 O -0.512 6.512 25 O -0.315 6.315 26 C -0.113 4.113 27 C -0.116 4.116 28 C -0.113 4.113 29 C 0.158 3.842 30 H 0.022 0.978 31 H 0.253 0.747 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.402 0.598 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.401 0.599 42 H 0.404 0.596 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -9.732 -15.503 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.307 5.307 10 C 0.055 3.945 11 C -0.179 4.179 12 C 0.047 3.953 13 N -0.340 5.340 14 C 0.296 3.704 15 O -0.399 6.399 16 C -0.006 4.006 17 H 0.118 0.882 18 C -0.182 4.182 19 C -0.179 4.179 20 C -0.008 4.008 21 H 0.118 0.882 22 C 0.305 3.695 23 N -0.421 5.421 24 O -0.385 6.385 25 O -0.232 6.232 26 C -0.152 4.152 27 C -0.154 4.154 28 C -0.152 4.152 29 C 0.048 3.952 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.238 0.762 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.229 0.771 42 H 0.236 0.764 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.417 -10.484 -14.624 18.791 hybrid contribution 1.042 1.460 -0.573 1.883 sum 6.460 -9.024 -15.196 18.817 Atomic orbital electron populations 1.69924 1.04891 1.25169 1.56340 1.24804 0.95607 0.97624 1.02060 0.86172 0.78649 0.83713 0.77495 1.21659 1.21733 1.20739 1.18999 0.90237 0.82257 1.44505 0.90326 1.43673 1.01753 0.99206 1.86111 1.22034 0.83096 0.88690 1.00700 1.22805 0.96516 0.99468 0.99133 1.21475 0.98566 0.93839 0.81370 1.45586 1.42417 1.38013 1.07990 1.20122 0.80776 0.83217 0.86258 1.90707 1.38498 1.29323 1.81339 1.22753 0.89134 0.97720 0.90964 0.88229 1.22938 0.96462 1.01338 0.97485 1.23107 0.93994 1.01873 0.98891 1.23026 0.92947 0.97245 0.87603 0.88234 1.20196 0.82939 0.84672 0.81675 1.43726 1.42463 1.39207 1.16713 1.90825 1.29529 1.51633 1.66547 1.89167 1.37640 1.77609 1.18748 1.21884 0.94774 0.96243 1.02277 1.22816 0.95803 0.95903 1.00900 1.21834 0.97860 0.94507 1.01001 1.20832 0.91633 0.87466 0.95310 0.96061 0.93649 0.94724 0.91615 0.91305 0.91681 0.76217 0.88962 0.89317 0.89031 0.89752 0.77127 0.76410 0.91165 0.91253 0.91990 0.92365 0.91704 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.88 10.54 55.49 0.59 -25.29 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.23 -5.97 10.29 -15.06 -0.15 -6.12 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.58 -13.80 3.13 -162.61 -0.51 -14.31 16 10 C 0.18 4.26 5.37 -0.70 0.00 4.26 16 11 C -0.14 -2.86 6.22 -25.39 -0.16 -3.02 16 12 C 0.14 2.47 0.40 -130.72 -0.05 2.42 16 13 N -0.69 -11.80 4.39 -46.58 -0.20 -12.00 16 14 C 0.51 9.10 6.28 -10.98 -0.07 9.03 16 15 O -0.52 -11.39 14.68 -14.02 -0.21 -11.59 16 16 C 0.06 0.79 3.84 -27.31 -0.10 0.68 16 17 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 18 C -0.14 -1.38 6.61 -25.21 -0.17 -1.55 16 19 C -0.14 -1.13 6.57 -24.73 -0.16 -1.29 16 20 C 0.05 0.57 3.76 -26.83 -0.10 0.47 16 21 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 22 C 0.52 6.13 7.48 -10.99 -0.08 6.04 16 23 N -0.85 -5.19 8.86 31.22 0.28 -4.91 16 24 O -0.51 -9.08 17.40 -13.51 -0.24 -9.32 16 25 O -0.31 -5.12 10.01 -64.30 -0.64 -5.76 16 26 C -0.11 -1.81 6.03 -26.19 -0.16 -1.97 16 27 C -0.12 -1.59 6.93 -23.53 -0.16 -1.76 16 28 C -0.11 -1.80 6.46 -26.21 -0.17 -1.97 16 29 C 0.16 3.08 2.61 -68.72 -0.18 2.90 16 30 H 0.02 0.45 7.97 -51.93 -0.41 0.04 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 32 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 33 H 0.07 1.75 7.02 -51.93 -0.36 1.38 16 34 H 0.07 1.48 7.19 -51.92 -0.37 1.11 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.40 6.69 7.79 -40.82 -0.32 6.37 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.77 8.05 -51.93 -0.42 0.36 16 41 H 0.40 0.98 8.83 -40.82 -0.36 0.62 16 42 H 0.40 2.10 8.93 -40.82 -0.36 1.73 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 1.18 6.84 -51.93 -0.36 0.82 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 1.00 7.35 -51.93 -0.38 0.62 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -36.34 379.32 -9.58 -45.92 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.51 Total: 7.62 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.82 Total: 7.92 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.15 Total: -56.52 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -1.08 Total: -26.67 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.34 -9.58 -45.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992175150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.848 kcal (2) G-P(sol) polarization free energy of solvation -36.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds