Wall clock time and date at job start Sat Apr 11 2020 05:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.49298 * 127.10598 * 359.41093 * 9 7 2 11 11 C 1.56327 * 106.45935 * 171.20640 * 10 9 7 12 12 C 1.52128 * 100.91473 * 336.91877 * 11 10 9 13 13 N 1.46493 * 111.49476 * 285.68060 * 12 11 10 14 14 C 1.34781 * 120.00172 * 288.52585 * 13 12 11 15 15 O 1.21284 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00378 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.86694 * 303.98683 * 16 14 13 18 18 C 1.54097 * 109.87900 * 64.99700 * 16 14 13 19 19 C 1.54804 * 104.18603 * 121.45578 * 18 16 14 20 20 C 1.54997 * 102.09408 * 20.87860 * 19 18 16 21 21 H 1.09004 * 110.61797 * 81.47849 * 20 19 18 22 22 C 1.50700 * 110.61937 * 204.47399 * 20 19 18 23 23 N 1.34777 * 120.00231 * 295.00242 * 22 20 19 24 24 O 1.21279 * 120.00313 * 114.99712 * 22 20 19 25 25 O 1.43748 * 109.87668 * 182.83088 * 16 14 13 26 26 C 1.51225 * 122.11515 * 150.98790 * 12 11 10 27 27 C 1.55692 * 104.60467 * 218.73282 * 26 12 11 28 28 C 1.56283 * 105.93770 * 7.25078 * 27 26 12 29 29 C 1.42709 * 127.10360 * 179.71911 * 9 7 2 30 30 H 1.09006 * 108.17081 * 103.46264 * 29 9 7 31 31 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.04583 * 290.59765 * 10 9 7 33 33 H 1.08998 * 110.04598 * 52.07486 * 10 9 7 34 34 H 1.09009 * 111.28402 * 218.92007 * 11 10 9 35 35 H 1.08998 * 110.94628 * 94.78501 * 11 10 9 36 36 H 0.97000 * 120.00425 * 108.51796 * 13 12 11 37 37 H 1.09001 * 110.48693 * 240.12936 * 18 16 14 38 38 H 1.09001 * 110.48819 * 2.78076 * 18 16 14 39 39 H 1.08999 * 110.90772 * 139.07945 * 19 18 16 40 40 H 1.09005 * 110.91251 * 262.68277 * 19 18 16 41 41 H 0.97003 * 120.00081 * 359.97438 * 23 22 20 42 42 H 0.97007 * 120.00042 * 179.97438 * 23 22 20 43 43 H 1.09001 * 110.41063 * 337.50861 * 26 12 11 44 44 H 1.08995 * 110.41094 * 99.95171 * 26 12 11 45 45 H 1.09006 * 110.15722 * 126.36768 * 27 26 12 46 46 H 1.08994 * 110.15908 * 248.06069 * 27 26 12 47 47 H 1.08999 * 110.97149 * 266.13860 * 28 27 26 48 48 H 1.08997 * 110.96951 * 142.37672 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1560 -2.5726 -0.0012 11 6 -0.4135 -4.0957 -0.2413 12 6 0.8803 -4.5013 -0.9312 13 7 0.9232 -4.0234 -2.3153 14 6 0.1327 -4.5896 -3.2486 15 8 -0.6139 -5.4951 -2.9426 16 6 0.1772 -4.0983 -4.6726 17 1 -0.0251 -3.0277 -4.7016 18 6 1.5623 -4.3867 -5.2833 19 6 1.2568 -5.2736 -6.5148 20 6 -0.2343 -4.9494 -6.7865 21 1 -0.3290 -4.0198 -7.3478 22 6 -0.8988 -6.0848 -7.5217 23 7 -0.5061 -6.3995 -8.7720 24 8 -1.7869 -6.7154 -6.9883 25 8 -0.7939 -4.8038 -5.4636 26 6 1.4461 -5.8994 -0.8211 27 6 2.9853 -5.6925 -0.7114 28 6 3.2025 -4.1507 -0.5771 29 6 1.8806 -3.7027 -0.0138 30 1 1.7908 -4.1150 0.9913 31 1 -0.4850 0.8401 0.0004 32 1 -0.5668 -2.2690 0.9617 33 1 -0.6084 -1.9879 -0.8021 34 1 -1.2730 -4.2539 -0.8929 35 1 -0.5374 -4.6238 0.7041 36 1 1.5205 -3.2993 -2.5602 37 1 2.0440 -3.4588 -5.5915 38 1 2.1885 -4.9247 -4.5716 39 1 1.8779 -4.9878 -7.3637 40 1 1.3882 -6.3291 -6.2763 41 1 0.2039 -5.8950 -9.1988 42 1 -0.9336 -7.1306 -9.2451 43 1 1.0646 -6.3946 0.0718 44 1 1.2030 -6.4791 -1.7115 45 1 3.3712 -6.2044 0.1702 46 1 3.4793 -6.0658 -1.6084 47 1 3.3859 -3.6963 -1.5508 48 1 4.0161 -3.9301 0.1140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992175150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:51 Heat of formation + Delta-G solvation = -101.847252 kcal Electronic energy + Delta-G solvation = -31295.341112 eV Core-core repulsion = 27157.159471 eV Total energy + Delta-G solvation = -4138.181641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10603 -41.26298 -39.90710 -38.61030 -36.15240 -34.88142 -34.54255 -33.68596 -32.95737 -31.81132 -30.63709 -28.53940 -27.37099 -25.99943 -25.67139 -23.23662 -22.26485 -21.80423 -21.59436 -21.19085 -20.11159 -19.01653 -18.41471 -18.31860 -17.60409 -17.52430 -17.33249 -16.61913 -16.24891 -16.10676 -15.73444 -15.68829 -15.59767 -15.40823 -14.89598 -14.66832 -14.52202 -14.14058 -14.06704 -13.53198 -13.24141 -13.04821 -12.97650 -12.84316 -12.77575 -12.65477 -12.54570 -12.19092 -12.09617 -12.04189 -11.91366 -11.78517 -11.54555 -11.41056 -11.32430 -11.00175 -10.85011 -10.72264 -10.69416 -10.36415 -9.91487 -8.86158 -7.80578 -5.17339 1.50399 1.50655 1.52632 1.60860 1.64607 1.87755 2.39216 2.53289 3.06289 3.10288 3.38498 3.42407 3.68060 3.76914 3.81244 3.89002 3.91073 4.04798 4.11032 4.15279 4.29376 4.36901 4.42395 4.44247 4.57641 4.60713 4.62918 4.80825 4.81758 4.93475 4.94946 4.99540 5.04929 5.05961 5.12521 5.23299 5.30568 5.50574 5.55766 5.57924 5.63104 5.68960 5.81456 5.88603 6.19503 6.43627 6.68957 7.05942 7.31291 7.35816 7.79015 8.52115 9.31157 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.003534 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.000268 B = 7920.917610 C = 8723.353800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.282 1.282 5 H -0.306 1.306 6 H -0.268 1.268 7 C -0.230 4.230 8 H 0.093 0.907 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.132 4.132 12 C 0.140 3.860 13 N -0.681 5.681 14 C 0.507 3.493 15 O -0.571 6.571 16 C 0.055 3.945 17 H 0.107 0.893 18 C -0.136 4.136 19 C -0.128 4.128 20 C 0.044 3.956 21 H 0.136 0.864 22 C 0.518 3.482 23 N -0.822 5.822 24 O -0.588 6.588 25 O -0.365 6.365 26 C -0.110 4.110 27 C -0.100 4.100 28 C -0.106 4.106 29 C 0.149 3.851 30 H 0.014 0.986 31 H 0.244 0.756 32 H -0.001 1.001 33 H 0.031 0.969 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.406 0.594 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.144 0.856 40 H 0.069 0.931 41 H 0.423 0.577 42 H 0.412 0.588 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.750 -9.942 -17.775 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.256 4.256 3 Si 0.804 3.196 4 H -0.209 1.209 5 H -0.233 1.233 6 H -0.193 1.193 7 C -0.358 4.358 8 H 0.110 0.890 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.171 4.171 12 C 0.051 3.949 13 N -0.333 5.333 14 C 0.293 3.707 15 O -0.450 6.450 16 C -0.006 4.006 17 H 0.125 0.875 18 C -0.174 4.174 19 C -0.166 4.166 20 C -0.017 4.017 21 H 0.153 0.847 22 C 0.302 3.698 23 N -0.389 5.389 24 O -0.467 6.467 25 O -0.283 6.283 26 C -0.148 4.148 27 C -0.138 4.138 28 C -0.145 4.145 29 C 0.040 3.960 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.243 0.757 37 H 0.145 0.855 38 H 0.103 0.897 39 H 0.162 0.838 40 H 0.088 0.912 41 H 0.255 0.745 42 H 0.244 0.756 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.463 -10.699 -16.967 22.179 hybrid contribution -0.230 1.500 0.124 1.522 sum 9.232 -9.200 -16.843 21.297 Atomic orbital electron populations 1.70156 1.06526 1.25120 1.58341 1.25603 0.96290 1.00936 1.02820 0.85123 0.77547 0.79356 0.77536 1.20873 1.23290 1.19330 1.19418 0.90955 0.82907 1.42543 0.88954 1.43771 1.01582 1.00484 1.85961 1.21662 0.83712 0.90371 0.97437 1.22662 0.97478 0.97219 0.99781 1.21438 0.96341 0.95332 0.81741 1.45539 1.42373 1.37874 1.07498 1.20910 0.79537 0.82315 0.87909 1.90677 1.40330 1.31602 1.82417 1.22831 0.91800 0.97453 0.88553 0.87533 1.23007 0.93441 1.03308 0.97668 1.23156 0.92572 1.00828 1.00011 1.23450 0.94215 0.98306 0.85691 0.84661 1.20585 0.82063 0.84371 0.82772 1.43469 1.41959 1.38735 1.14755 1.90795 1.32996 1.54269 1.68608 1.89126 1.39577 1.78074 1.21487 1.21874 0.96703 0.94210 1.02049 1.22745 0.93642 0.94366 1.03090 1.21846 0.95598 0.95794 1.01247 1.21036 0.94433 0.85215 0.95346 0.96886 0.94664 0.98272 0.95019 0.93052 0.90571 0.75711 0.85465 0.89651 0.83796 0.91219 0.74471 0.75603 0.90760 0.92213 0.89977 0.89987 0.90958 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.86 10.54 21.65 0.23 -55.63 16 2 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 3 Si 0.98 43.32 29.55 68.60 2.03 45.35 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.31 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.23 -11.74 10.29 84.04 0.86 -10.88 16 8 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.59 -28.40 3.13 -668.39 -2.09 -30.50 16 10 C 0.19 9.71 5.37 86.99 0.47 10.17 16 11 C -0.13 -5.64 6.22 31.46 0.20 -5.44 16 12 C 0.14 5.08 0.40 4.32 0.00 5.08 16 13 N -0.68 -23.26 4.39 -419.68 -1.84 -25.10 16 14 C 0.51 18.29 6.28 87.66 0.55 18.84 16 15 O -0.57 -25.93 14.68 15.67 0.23 -25.70 16 16 C 0.05 1.50 3.84 30.22 0.12 1.62 16 17 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 18 C -0.14 -2.17 6.61 31.58 0.21 -1.96 16 19 C -0.13 -1.58 6.57 31.89 0.21 -1.37 16 20 C 0.04 0.85 3.76 30.53 0.11 0.96 16 21 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 22 C 0.52 11.70 7.48 87.66 0.66 12.36 16 23 N -0.82 -7.96 8.86 -173.53 -1.54 -9.50 16 24 O -0.59 -21.66 17.40 15.21 0.26 -21.40 16 25 O -0.36 -11.97 10.01 -121.18 -1.21 -13.18 16 26 C -0.11 -3.36 6.03 30.94 0.19 -3.17 16 27 C -0.10 -2.40 6.93 32.67 0.23 -2.17 16 28 C -0.11 -3.06 6.46 30.93 0.20 -2.86 16 29 C 0.15 5.67 2.61 46.47 0.12 5.79 16 30 H 0.01 0.55 7.97 -2.38 -0.02 0.53 16 31 H 0.24 14.14 8.31 -92.70 -0.77 13.37 16 32 H 0.00 -0.05 8.00 -2.39 -0.02 -0.07 16 33 H 0.03 1.79 7.02 -2.39 -0.02 1.78 16 34 H 0.05 2.35 7.19 -2.38 -0.02 2.34 16 35 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.41 13.14 7.79 -92.71 -0.72 12.42 16 37 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.45 7.69 -2.39 -0.02 1.43 16 39 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.07 1.10 8.05 -2.38 -0.02 1.08 16 41 H 0.42 0.34 8.83 -92.71 -0.82 -0.48 16 42 H 0.41 3.45 8.93 -92.70 -0.83 2.62 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 1.98 6.84 -2.39 -0.02 1.96 16 45 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.07 1.98 7.35 -2.39 -0.02 1.96 16 48 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -86.86 379.32 -0.71 -87.57 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -1.36 Total: 24.06 kcal Atomic # 6 Polarization: 19.43 SS G_CDS: 4.58 Total: 24.02 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -5.25 Total: -120.73 kcal Atomic # 8 Polarization: -59.56 SS G_CDS: -0.72 Total: -60.28 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -86.86 -0.71 -87.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992175150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.273 kcal (2) G-P(sol) polarization free energy of solvation -86.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds