Wall clock time and date at job start Sat Apr 11 2020 05:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48498 * 109.47401 * 240.00560 * 3 2 1 5 5 H 1.48500 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47325 * 120.00024 * 3 2 1 7 7 C 1.38814 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00203 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99635 * 359.97438 * 7 2 1 10 10 C 1.49294 * 127.10770 * 0.02562 * 9 7 2 11 11 C 1.57744 * 106.66794 * 188.74939 * 10 9 7 12 12 C 1.52134 * 100.13057 * 23.21762 * 11 10 9 13 13 N 1.46501 * 111.09014 * 74.40419 * 12 11 10 14 14 C 1.34771 * 120.00196 * 78.36469 * 13 12 11 15 15 O 1.21284 * 120.00023 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00178 * 179.97438 * 14 13 12 17 17 H 1.09006 * 110.41366 * 305.85279 * 16 14 13 18 18 C 1.54474 * 110.37366 * 68.16334 * 16 14 13 19 19 C 1.54512 * 104.06131 * 142.81134 * 18 16 14 20 20 C 1.54475 * 104.06386 * 0.02562 * 19 18 16 21 21 H 1.08994 * 110.37405 * 94.85356 * 20 19 18 22 22 C 1.50703 * 110.46800 * 217.14345 * 20 19 18 23 23 N 1.34773 * 119.99994 * 291.89358 * 22 20 19 24 24 O 1.21280 * 119.99960 * 111.88203 * 22 20 19 25 25 O 1.44426 * 104.80234 * 336.01918 * 20 19 18 26 26 C 1.51221 * 122.10062 * 208.58194 * 12 11 10 27 27 C 1.55697 * 104.61072 * 141.92001 * 26 12 11 28 28 C 1.56283 * 105.93055 * 352.75627 * 27 26 12 29 29 C 1.42698 * 127.10073 * 180.02562 * 9 7 2 30 30 H 1.09000 * 107.77977 * 256.38877 * 29 9 7 31 31 H 0.96998 * 119.99945 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.04776 * 307.90531 * 10 9 7 33 33 H 1.09005 * 110.04654 * 69.31967 * 10 9 7 34 34 H 1.09004 * 111.09633 * 265.71467 * 11 10 9 35 35 H 1.09006 * 111.84062 * 141.02612 * 11 10 9 36 36 H 0.97005 * 119.99823 * 258.35596 * 13 12 11 37 37 H 1.08999 * 110.50826 * 24.16371 * 18 16 14 38 38 H 1.09000 * 110.63108 * 261.51369 * 18 16 14 39 39 H 1.09002 * 110.50990 * 241.35711 * 19 18 16 40 40 H 1.08994 * 110.62569 * 118.70351 * 19 18 16 41 41 H 0.97009 * 119.99797 * 359.97438 * 23 22 20 42 42 H 0.96998 * 120.00558 * 179.97438 * 23 22 20 43 43 H 1.09001 * 110.41135 * 260.70438 * 26 12 11 44 44 H 1.09002 * 110.40970 * 23.13902 * 26 12 11 45 45 H 1.09001 * 110.15420 * 111.87285 * 27 26 12 46 46 H 1.08992 * 110.15655 * 233.63745 * 27 26 12 47 47 H 1.08995 * 110.96968 * 93.86142 * 28 27 26 48 48 H 1.09000 * 110.96438 * 217.58318 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1559 -2.5727 -0.0005 11 6 -0.4201 -4.1108 0.2293 12 6 0.8806 -4.5066 0.9119 13 7 0.9156 -4.0298 2.2967 14 6 0.2379 -4.6923 3.2549 15 8 -0.4014 -5.6830 2.9707 16 6 0.2744 -4.2021 4.6795 17 1 1.3049 -4.0973 5.0193 18 6 -0.4725 -2.8557 4.8043 19 6 -1.1796 -2.9442 6.1752 20 6 -0.7757 -4.3334 6.7168 21 1 0.0934 -4.2484 7.3691 22 6 -1.9262 -4.9652 7.4573 23 7 -2.3453 -4.4401 8.6257 24 8 -2.4751 -5.9460 7.0018 25 8 -0.4488 -5.1068 5.5418 26 6 1.4532 -5.9020 0.8027 27 6 2.9919 -5.6881 0.6988 28 6 3.2026 -4.1452 0.5669 29 6 1.8808 -3.7026 -0.0005 30 1 1.7853 -4.1042 -1.0093 31 1 -0.4850 0.8400 0.0004 32 1 -0.6045 -1.9947 0.8074 33 1 -0.5714 -2.2601 -0.9586 34 1 -0.5416 -4.6340 -0.7191 35 1 -1.2754 -4.2821 0.8831 36 1 1.4267 -3.2373 2.5239 37 1 -1.2040 -2.7491 4.0033 38 1 0.2312 -2.0234 4.7906 39 1 -2.2608 -2.8815 6.0520 40 1 -0.8258 -2.1574 6.8413 41 1 -1.9060 -3.6557 8.9902 42 1 -3.0860 -4.8465 9.1022 43 1 1.2094 -6.4836 1.6917 44 1 1.0772 -6.3982 -0.0921 45 1 3.4841 -6.0590 1.5979 46 1 3.3833 -6.1974 -0.1817 47 1 3.3802 -3.6910 1.5416 48 1 4.0181 -3.9203 -0.1205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992175163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:56 Heat of formation + Delta-G solvation = -73.958905 kcal Electronic energy + Delta-G solvation = -31299.769717 eV Core-core repulsion = 27162.797405 eV Total energy + Delta-G solvation = -4136.972311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.77497 -40.13297 -38.71442 -37.33259 -34.40482 -34.03173 -33.17786 -32.14360 -31.67108 -30.36001 -29.40102 -26.92583 -25.88758 -24.74768 -24.06325 -22.22227 -20.81585 -20.71077 -20.42947 -19.62000 -18.68984 -18.08035 -17.39214 -16.68407 -16.53264 -16.37867 -15.82972 -15.36430 -14.80081 -14.68302 -14.49598 -14.41045 -14.21138 -13.95232 -13.80873 -13.53675 -13.25675 -12.64720 -12.35161 -12.25709 -11.91247 -11.86142 -11.74029 -11.42217 -11.32421 -11.05302 -11.02798 -10.93869 -10.76279 -10.52104 -10.34926 -10.32364 -10.05094 -9.96655 -9.95955 -9.85459 -9.71925 -9.45032 -9.03256 -8.72538 -8.44416 -6.92047 -5.80517 -3.15419 2.37978 2.76921 3.00883 3.32397 3.38512 3.39354 3.44034 4.07317 4.31149 4.40213 4.55248 4.62303 4.64782 4.81714 4.90836 5.00071 5.20352 5.25227 5.29896 5.36076 5.44139 5.56627 5.59146 5.74216 5.75634 5.81970 5.93420 5.97367 6.00976 6.17946 6.24973 6.33858 6.38099 6.39505 6.47422 6.51305 6.56105 6.65578 6.80624 6.91218 7.03169 7.21769 7.48006 7.54853 7.71793 8.02571 8.06016 8.13738 8.70737 9.07433 9.73779 10.43390 11.31296 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.003868 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.126183 B = 7236.643437 C = 8723.004069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.585 5.585 10 C 0.180 3.820 11 C -0.142 4.142 12 C 0.135 3.865 13 N -0.687 5.687 14 C 0.518 3.482 15 O -0.524 6.524 16 C 0.055 3.945 17 H 0.094 0.906 18 C -0.141 4.141 19 C -0.141 4.141 20 C 0.052 3.948 21 H 0.097 0.903 22 C 0.522 3.478 23 N -0.854 5.854 24 O -0.514 6.514 25 O -0.314 6.314 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.113 4.113 29 C 0.158 3.842 30 H 0.024 0.976 31 H 0.253 0.747 32 H 0.065 0.935 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.404 0.596 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.401 0.599 42 H 0.404 0.596 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -4.681 14.481 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.309 5.309 10 C 0.056 3.944 11 C -0.181 4.181 12 C 0.048 3.952 13 N -0.339 5.339 14 C 0.302 3.698 15 O -0.400 6.400 16 C -0.006 4.006 17 H 0.112 0.888 18 C -0.179 4.179 19 C -0.179 4.179 20 C -0.010 4.010 21 H 0.114 0.886 22 C 0.305 3.695 23 N -0.421 5.421 24 O -0.387 6.387 25 O -0.231 6.231 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.152 4.152 29 C 0.048 3.952 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.240 0.760 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.229 0.771 42 H 0.236 0.764 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.835 -6.007 13.719 14.999 hybrid contribution 0.643 1.861 0.531 2.039 sum 1.478 -4.146 14.250 14.914 Atomic orbital electron populations 1.69908 1.04864 1.25269 1.56431 1.24780 0.95598 0.97565 1.02048 0.86256 0.78489 0.83396 0.77909 1.21207 1.21678 1.21209 1.18969 0.90251 0.82234 1.44497 0.90346 1.43673 1.01722 0.99269 1.86207 1.22263 0.83101 0.88297 1.00731 1.23062 0.96228 0.99627 0.99180 1.21525 0.98268 0.94205 0.81239 1.45596 1.50668 1.30466 1.07185 1.19880 0.79907 0.84124 0.85937 1.90703 1.41290 1.25575 1.82405 1.22944 0.97270 0.89688 0.90695 0.88842 1.22894 1.00715 0.96540 0.97795 1.22905 1.02560 0.95175 0.97231 1.22891 0.96363 0.91474 0.90244 0.88561 1.20216 0.84375 0.83874 0.80997 1.43725 1.39316 1.34700 1.24335 1.90817 1.56303 1.25320 1.66294 1.89401 1.74743 1.31677 1.27262 1.21922 0.94663 0.96254 1.02704 1.22816 0.95899 0.95838 1.00910 1.21815 0.97730 0.94598 1.01011 1.20852 0.91719 0.87325 0.95321 0.95906 0.93623 0.91693 0.94670 0.91593 0.91592 0.75995 0.89265 0.88709 0.89932 0.89195 0.77064 0.76413 0.90510 0.91228 0.92326 0.92022 0.91642 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.20 10.55 55.49 0.59 -24.61 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.23 -5.86 10.28 -15.06 -0.15 -6.02 16 8 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.59 -13.57 3.04 -161.73 -0.49 -14.06 16 10 C 0.18 4.16 5.37 0.11 0.00 4.16 16 11 C -0.14 -2.81 6.41 -24.58 -0.16 -2.97 16 12 C 0.14 2.46 0.42 -130.72 -0.06 2.40 16 13 N -0.69 -11.76 4.31 -46.59 -0.20 -11.96 16 14 C 0.52 9.10 6.47 -10.99 -0.07 9.03 16 15 O -0.52 -11.25 14.68 -13.62 -0.20 -11.45 16 16 C 0.06 0.77 3.71 -27.11 -0.10 0.67 16 17 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 18 C -0.14 -1.70 6.62 -25.16 -0.17 -1.87 16 19 C -0.14 -1.31 6.62 -25.16 -0.17 -1.48 16 20 C 0.05 0.57 3.70 -27.11 -0.10 0.47 16 21 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 22 C 0.52 6.27 7.35 -10.99 -0.08 6.19 16 23 N -0.85 -5.53 8.87 31.22 0.28 -5.25 16 24 O -0.51 -9.17 17.39 -13.63 -0.24 -9.40 16 25 O -0.31 -5.06 10.18 -64.20 -0.65 -5.71 16 26 C -0.12 -1.92 5.97 -26.19 -0.16 -2.08 16 27 C -0.12 -1.67 6.94 -23.53 -0.16 -1.84 16 28 C -0.11 -1.84 6.45 -26.22 -0.17 -2.01 16 29 C 0.16 3.07 2.61 -68.75 -0.18 2.89 16 30 H 0.02 0.48 7.99 -51.93 -0.42 0.07 16 31 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.06 1.65 7.05 -51.93 -0.37 1.28 16 33 H 0.04 0.90 7.98 -51.93 -0.41 0.48 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.35 7.78 -51.93 -0.40 0.95 16 36 H 0.40 6.81 7.95 -40.82 -0.32 6.48 16 37 H 0.09 1.29 7.86 -51.93 -0.41 0.89 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.40 1.18 8.83 -40.82 -0.36 0.82 16 42 H 0.40 2.24 8.93 -40.82 -0.36 1.87 16 43 H 0.08 1.37 6.21 -51.93 -0.32 1.05 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 1.05 7.51 -51.93 -0.39 0.66 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -35.16 379.70 -9.57 -44.73 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.53 Total: 8.95 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -1.82 Total: 7.40 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.17 Total: -55.89 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.09 Total: -26.57 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.16 -9.57 -44.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992175163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.231 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds