Wall clock time and date at job start Sat Apr 11 2020 05:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99768 * 2 1 4 4 H 1.48497 * 109.47501 * 274.27939 * 3 2 1 5 5 H 1.48496 * 109.47174 * 34.28090 * 3 2 1 6 6 H 1.48508 * 109.46946 * 154.27858 * 3 2 1 7 7 C 1.38807 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00125 * 339.28596 * 7 2 1 9 9 N 1.36938 * 120.00144 * 159.27067 * 7 2 1 10 10 C 1.46855 * 120.38284 * 151.81926 * 9 7 2 11 11 C 1.53345 * 108.81033 * 123.11855 * 10 9 7 12 12 C 1.53182 * 108.76341 * 51.31802 * 11 10 9 13 13 C 1.52849 * 117.65550 * 90.00402 * 12 11 10 14 14 C 1.52823 * 117.71777 * 158.86421 * 12 11 10 15 15 H 1.08997 * 117.49958 * 359.86015 * 14 12 11 16 16 N 1.46496 * 117.50298 * 144.90537 * 14 12 11 17 17 C 1.34777 * 119.99933 * 204.99958 * 16 14 12 18 18 O 1.21280 * 120.00089 * 0.02562 * 17 16 14 19 19 C 1.50704 * 119.99798 * 179.97438 * 17 16 14 20 20 H 1.08987 * 109.87379 * 304.30031 * 19 17 16 21 21 C 1.54106 * 109.87746 * 65.30955 * 19 17 16 22 22 C 1.54815 * 104.18435 * 121.44855 * 21 19 17 23 23 C 1.54991 * 102.09475 * 20.88379 * 22 21 19 24 24 H 1.08998 * 110.62168 * 81.47239 * 23 22 21 25 25 C 1.50700 * 110.61706 * 204.47154 * 23 22 21 26 26 N 1.34773 * 120.00316 * 294.99809 * 25 23 22 27 27 O 1.21288 * 119.99936 * 114.99962 * 25 23 22 28 28 O 1.43747 * 109.87750 * 183.29206 * 19 17 16 29 29 C 1.53187 * 115.07868 * 304.54500 * 12 11 10 30 30 C 1.46839 * 120.38691 * 331.85071 * 9 7 2 31 31 H 0.97004 * 120.00483 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.57710 * 3.32360 * 10 9 7 33 33 H 1.08995 * 109.58244 * 242.91867 * 10 9 7 34 34 H 1.09004 * 109.58876 * 171.10054 * 11 10 9 35 35 H 1.09000 * 109.59034 * 291.39203 * 11 10 9 36 36 H 1.09003 * 117.50800 * 215.18953 * 13 12 11 37 37 H 1.09002 * 117.50590 * 0.24652 * 13 12 11 38 38 H 0.97004 * 120.00330 * 25.00199 * 16 14 12 39 39 H 1.08999 * 110.48371 * 240.12672 * 21 19 17 40 40 H 1.09002 * 110.48495 * 2.64423 * 21 19 17 41 41 H 1.09008 * 110.90058 * 139.07991 * 22 21 19 42 42 H 1.08998 * 110.90763 * 262.67763 * 22 21 19 43 43 H 0.97003 * 119.99667 * 359.97438 * 26 25 23 44 44 H 0.97000 * 120.00370 * 179.97438 * 26 25 23 45 45 H 1.09010 * 109.58661 * 175.23747 * 29 12 11 46 46 H 1.08995 * 109.58889 * 295.66449 * 29 12 11 47 47 H 1.08997 * 109.58608 * 117.07801 * 30 9 7 48 48 H 1.09002 * 109.69388 * 356.74309 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4072 2.0988 -1.3961 5 1 1.4957 2.6248 0.7886 6 1 3.5900 1.4158 0.6077 7 6 2.0103 -1.2021 0.0005 8 1 1.5227 -2.1071 0.3318 9 7 3.3132 -1.2406 -0.4192 10 6 4.2346 -2.2539 0.1108 11 6 4.8154 -3.0550 -1.0607 12 6 5.3741 -2.0762 -2.0981 13 6 6.8368 -1.6546 -1.9600 14 6 6.4156 -2.6035 -3.0843 15 1 6.7081 -3.6498 -2.9959 16 7 6.3888 -2.0676 -4.4475 17 6 6.8894 -2.7933 -5.4669 18 8 7.3617 -3.8902 -5.2558 19 6 6.8613 -2.2422 -6.8692 20 1 5.8401 -1.9773 -7.1428 21 6 7.7677 -0.9993 -6.9621 22 6 8.8006 -1.3640 -8.0561 23 6 8.0715 -2.4934 -8.8276 24 1 7.3621 -2.0747 -9.5414 25 6 9.0649 -3.3859 -9.5259 26 7 9.8309 -2.8938 -10.5196 27 8 9.1750 -4.5472 -9.1936 28 8 7.3758 -3.2197 -7.7890 29 6 4.3775 -1.0296 -2.6061 30 6 3.8054 -0.2689 -1.4039 31 1 -0.4851 0.8400 -0.0004 32 1 3.6948 -2.9242 0.7797 33 1 5.0424 -1.7644 0.6547 34 1 5.6155 -3.7016 -0.7002 35 1 4.0310 -3.6618 -1.5130 36 1 7.0939 -0.6315 -2.2347 37 1 7.4064 -2.0766 -1.1320 38 1 6.0107 -1.1903 -4.6164 39 1 7.1880 -0.1259 -7.2605 40 1 8.2657 -0.8184 -6.0095 41 1 8.9952 -0.5113 -8.7068 42 1 9.7254 -1.7310 -7.6111 43 1 9.7425 -1.9651 -10.7855 44 1 10.4705 -3.4681 -10.9688 45 1 4.8871 -0.3322 -3.2711 46 1 3.5690 -1.5254 -3.1433 47 1 4.5866 0.3437 -0.9538 48 1 2.9848 0.3691 -1.7322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016833670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:02:29 Heat of formation + Delta-G solvation = -62.434858 kcal Electronic energy + Delta-G solvation = -29624.470310 eV Core-core repulsion = 25487.997719 eV Total energy + Delta-G solvation = -4136.472591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98972 -39.90290 -38.94609 -37.88840 -35.73907 -34.26903 -33.48754 -32.44246 -31.71630 -30.58996 -30.29699 -28.63214 -25.37352 -24.19892 -23.08942 -22.78933 -22.01286 -21.09066 -21.02065 -20.34551 -18.56966 -18.28142 -17.82885 -17.04150 -16.88471 -16.65890 -16.16758 -15.45868 -15.33623 -15.00764 -14.90769 -14.51609 -14.21747 -14.05539 -13.94995 -13.90761 -13.77125 -12.98662 -12.79863 -12.65097 -12.45239 -12.28738 -12.21876 -12.00008 -11.97553 -11.74010 -11.55057 -11.19712 -10.80647 -10.73980 -10.60659 -10.37561 -10.18406 -10.16737 -10.01973 -9.81765 -9.72567 -9.50525 -9.46241 -8.77071 -8.48103 -6.95780 -5.96415 -3.32076 2.14862 2.35642 2.48736 2.97656 3.27042 3.45566 3.48687 3.59729 3.85045 4.01213 4.19062 4.26459 4.39378 4.48045 4.50440 4.61841 4.78891 4.84307 4.91576 4.96994 5.00256 5.09502 5.12060 5.28618 5.30052 5.40462 5.41823 5.71525 5.83906 5.89750 5.93992 6.03485 6.08868 6.14598 6.30331 6.32076 6.35004 6.40669 6.48500 6.59552 6.67516 6.69604 6.81366 6.94694 7.37839 7.80818 7.96870 8.11728 8.32611 8.94327 9.71140 10.09338 11.19650 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.002300 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.950717 B =12171.561570 C =12673.500870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.883 3.117 4 H -0.290 1.290 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.099 4.099 12 C -0.101 4.101 13 C -0.184 4.184 14 C 0.076 3.924 15 H 0.134 0.866 16 N -0.695 5.695 17 C 0.514 3.486 18 O -0.514 6.514 19 C 0.057 3.943 20 H 0.103 0.897 21 C -0.146 4.146 22 C -0.141 4.141 23 C 0.054 3.946 24 H 0.103 0.897 25 C 0.521 3.479 26 N -0.853 5.853 27 O -0.512 6.512 28 O -0.315 6.315 29 C -0.098 4.098 30 C 0.132 3.868 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.401 0.599 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.401 0.599 44 H 0.406 0.594 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.026 0.974 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.743 2.667 -19.859 28.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.713 3.287 4 H -0.218 1.218 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.139 4.139 12 C -0.102 4.102 13 C -0.222 4.222 14 C -0.029 4.029 15 H 0.152 0.848 16 N -0.347 5.347 17 C 0.299 3.701 18 O -0.388 6.388 19 C -0.004 4.004 20 H 0.120 0.880 21 C -0.184 4.184 22 C -0.179 4.179 23 C -0.008 4.008 24 H 0.120 0.880 25 C 0.304 3.696 26 N -0.420 5.420 27 O -0.385 6.385 28 O -0.232 6.232 29 C -0.137 4.137 30 C 0.006 3.994 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.236 0.764 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.229 0.771 44 H 0.238 0.762 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.043 0.957 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.817 0.940 -19.304 27.681 hybrid contribution 0.432 2.017 -0.483 2.118 sum 20.249 2.957 -19.787 28.466 Atomic orbital electron populations 1.69843 1.05740 1.26499 1.53019 1.25309 0.95228 0.97570 0.99577 0.86932 0.80195 0.84748 0.76782 1.21798 1.23213 1.19519 1.18948 0.85136 0.94724 1.39939 0.89749 1.44276 1.08609 1.34601 1.45222 1.20884 0.92437 0.91039 0.92993 1.21682 0.99640 0.96307 0.96232 1.21928 0.90041 0.99676 0.98568 1.23572 0.98357 0.99887 1.00401 1.21849 1.05268 0.97981 0.77844 0.84835 1.45293 1.61879 1.21103 1.06393 1.20294 0.78240 0.85615 0.85987 1.90754 1.43853 1.19856 1.84330 1.22711 0.99721 0.88908 0.89093 0.87990 1.22968 0.97187 0.97264 1.01011 1.23113 0.99553 0.97780 0.97482 1.23090 0.93893 0.91431 0.92364 0.87957 1.20139 0.81389 0.88175 0.79865 1.43716 1.43175 1.16270 1.38807 1.90839 1.66979 1.17454 1.63205 1.89219 1.71786 1.27407 1.34755 1.21634 0.97217 0.96155 0.98714 1.21263 0.97183 0.91993 0.88920 0.92805 0.91670 0.95800 0.92386 0.91294 0.88932 0.88223 0.76364 0.88714 0.89233 0.88706 0.89551 0.77068 0.76237 0.93390 0.90976 0.95655 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.53 13.97 55.49 0.78 -26.75 16 2 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 3 Si 0.88 21.85 24.40 -169.99 -4.15 17.71 16 4 H -0.29 -6.84 6.66 56.52 0.38 -6.46 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.58 6.65 56.52 0.38 -6.20 16 7 C -0.26 -7.12 10.00 -15.06 -0.15 -7.27 16 8 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 9 N -0.60 -13.93 2.71 -172.26 -0.47 -14.40 16 10 C 0.15 2.92 6.52 -3.67 -0.02 2.90 16 11 C -0.10 -1.60 5.83 -26.46 -0.15 -1.76 16 12 C -0.10 -1.50 1.94 -154.49 -0.30 -1.80 16 13 C -0.18 -2.34 9.86 -26.79 -0.26 -2.60 16 14 C 0.08 1.03 6.14 -68.00 -0.42 0.61 16 15 H 0.13 2.00 7.40 -51.93 -0.38 1.62 16 16 N -0.69 -8.14 5.32 -53.88 -0.29 -8.43 16 17 C 0.51 6.91 6.95 -10.98 -0.08 6.83 16 18 O -0.51 -9.52 16.09 -14.01 -0.23 -9.74 16 19 C 0.06 0.56 3.84 -27.30 -0.10 0.45 16 20 H 0.10 0.76 8.14 -51.94 -0.42 0.34 16 21 C -0.15 -0.85 6.62 -25.20 -0.17 -1.02 16 22 C -0.14 -0.73 6.57 -24.72 -0.16 -0.89 16 23 C 0.05 0.42 3.76 -26.83 -0.10 0.31 16 24 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 25 C 0.52 4.91 7.48 -10.99 -0.08 4.83 16 26 N -0.85 -3.47 8.86 31.22 0.28 -3.20 16 27 O -0.51 -7.95 17.40 -13.48 -0.23 -8.18 16 28 O -0.31 -4.06 10.04 -64.29 -0.65 -4.70 16 29 C -0.10 -1.59 5.37 -26.45 -0.14 -1.74 16 30 C 0.13 2.74 4.22 -3.68 -0.02 2.72 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.40 3.72 7.12 -40.82 -0.29 3.42 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.57 7.69 -51.93 -0.40 0.17 16 41 H 0.09 0.14 8.14 -51.92 -0.42 -0.28 16 42 H 0.09 0.57 8.05 -51.93 -0.42 0.15 16 43 H 0.40 0.17 8.83 -40.82 -0.36 -0.20 16 44 H 0.41 1.38 8.93 -40.82 -0.36 1.02 16 45 H 0.05 0.63 6.75 -51.92 -0.35 0.28 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.03 0.52 7.27 -51.93 -0.38 0.14 16 48 H 0.07 1.63 4.32 -51.93 -0.22 1.41 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -39.37 381.55 -8.87 -48.24 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.41 Total: 1.59 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.25 Total: 2.12 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.30 Total: -52.78 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.11 Total: -22.63 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.15 Total: 17.71 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.37 -8.87 -48.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016833670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.194 kcal (2) G-P(sol) polarization free energy of solvation -39.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds