Wall clock time and date at job start Sat Apr 11 2020 05:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99768 * 2 1 4 4 H 1.48497 * 109.47501 * 274.27939 * 3 2 1 5 5 H 1.48496 * 109.47174 * 34.28090 * 3 2 1 6 6 H 1.48508 * 109.46946 * 154.27858 * 3 2 1 7 7 C 1.38807 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00125 * 339.28596 * 7 2 1 9 9 N 1.36938 * 120.00144 * 159.27067 * 7 2 1 10 10 C 1.46855 * 120.38284 * 151.81926 * 9 7 2 11 11 C 1.53345 * 108.81033 * 123.11855 * 10 9 7 12 12 C 1.53182 * 108.76341 * 51.31802 * 11 10 9 13 13 C 1.52849 * 117.65550 * 90.00402 * 12 11 10 14 14 C 1.52823 * 117.71777 * 158.86421 * 12 11 10 15 15 H 1.08997 * 117.49958 * 359.86015 * 14 12 11 16 16 N 1.46496 * 117.50298 * 144.90537 * 14 12 11 17 17 C 1.34777 * 119.99933 * 204.99958 * 16 14 12 18 18 O 1.21280 * 120.00089 * 0.02562 * 17 16 14 19 19 C 1.50704 * 119.99798 * 179.97438 * 17 16 14 20 20 H 1.08987 * 109.87379 * 304.30031 * 19 17 16 21 21 C 1.54106 * 109.87746 * 65.30955 * 19 17 16 22 22 C 1.54815 * 104.18435 * 121.44855 * 21 19 17 23 23 C 1.54991 * 102.09475 * 20.88379 * 22 21 19 24 24 H 1.08998 * 110.62168 * 81.47239 * 23 22 21 25 25 C 1.50700 * 110.61706 * 204.47154 * 23 22 21 26 26 N 1.34773 * 120.00316 * 294.99809 * 25 23 22 27 27 O 1.21288 * 119.99936 * 114.99962 * 25 23 22 28 28 O 1.43747 * 109.87750 * 183.29206 * 19 17 16 29 29 C 1.53187 * 115.07868 * 304.54500 * 12 11 10 30 30 C 1.46839 * 120.38691 * 331.85071 * 9 7 2 31 31 H 0.97004 * 120.00483 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.57710 * 3.32360 * 10 9 7 33 33 H 1.08995 * 109.58244 * 242.91867 * 10 9 7 34 34 H 1.09004 * 109.58876 * 171.10054 * 11 10 9 35 35 H 1.09000 * 109.59034 * 291.39203 * 11 10 9 36 36 H 1.09003 * 117.50800 * 215.18953 * 13 12 11 37 37 H 1.09002 * 117.50590 * 0.24652 * 13 12 11 38 38 H 0.97004 * 120.00330 * 25.00199 * 16 14 12 39 39 H 1.08999 * 110.48371 * 240.12672 * 21 19 17 40 40 H 1.09002 * 110.48495 * 2.64423 * 21 19 17 41 41 H 1.09008 * 110.90058 * 139.07991 * 22 21 19 42 42 H 1.08998 * 110.90763 * 262.67763 * 22 21 19 43 43 H 0.97003 * 119.99667 * 359.97438 * 26 25 23 44 44 H 0.97000 * 120.00370 * 179.97438 * 26 25 23 45 45 H 1.09010 * 109.58661 * 175.23747 * 29 12 11 46 46 H 1.08995 * 109.58889 * 295.66449 * 29 12 11 47 47 H 1.08997 * 109.58608 * 117.07801 * 30 9 7 48 48 H 1.09002 * 109.69388 * 356.74309 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4072 2.0988 -1.3961 5 1 1.4957 2.6248 0.7886 6 1 3.5900 1.4158 0.6077 7 6 2.0103 -1.2021 0.0005 8 1 1.5227 -2.1071 0.3318 9 7 3.3132 -1.2406 -0.4192 10 6 4.2346 -2.2539 0.1108 11 6 4.8154 -3.0550 -1.0607 12 6 5.3741 -2.0762 -2.0981 13 6 6.8368 -1.6546 -1.9600 14 6 6.4156 -2.6035 -3.0843 15 1 6.7081 -3.6498 -2.9959 16 7 6.3888 -2.0676 -4.4475 17 6 6.8894 -2.7933 -5.4669 18 8 7.3617 -3.8902 -5.2558 19 6 6.8613 -2.2422 -6.8692 20 1 5.8401 -1.9773 -7.1428 21 6 7.7677 -0.9993 -6.9621 22 6 8.8006 -1.3640 -8.0561 23 6 8.0715 -2.4934 -8.8276 24 1 7.3621 -2.0747 -9.5414 25 6 9.0649 -3.3859 -9.5259 26 7 9.8309 -2.8938 -10.5196 27 8 9.1750 -4.5472 -9.1936 28 8 7.3758 -3.2197 -7.7890 29 6 4.3775 -1.0296 -2.6061 30 6 3.8054 -0.2689 -1.4039 31 1 -0.4851 0.8400 -0.0004 32 1 3.6948 -2.9242 0.7797 33 1 5.0424 -1.7644 0.6547 34 1 5.6155 -3.7016 -0.7002 35 1 4.0310 -3.6618 -1.5130 36 1 7.0939 -0.6315 -2.2347 37 1 7.4064 -2.0766 -1.1320 38 1 6.0107 -1.1903 -4.6164 39 1 7.1880 -0.1259 -7.2605 40 1 8.2657 -0.8184 -6.0095 41 1 8.9952 -0.5113 -8.7068 42 1 9.7254 -1.7310 -7.6111 43 1 9.7425 -1.9651 -10.7855 44 1 10.4705 -3.4681 -10.9688 45 1 4.8871 -0.3322 -3.2711 46 1 3.5690 -1.5254 -3.1433 47 1 4.5866 0.3437 -0.9538 48 1 2.9848 0.3691 -1.7322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016833670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:02:28 Heat of formation + Delta-G solvation = -94.780951 kcal Electronic energy + Delta-G solvation = -29625.872942 eV Core-core repulsion = 25487.997719 eV Total energy + Delta-G solvation = -4137.875223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75612 -40.87969 -39.98360 -38.85895 -37.26336 -34.89884 -34.70388 -33.70042 -32.93572 -32.04592 -31.07974 -30.07568 -26.16732 -25.91831 -24.54011 -23.45943 -23.10127 -22.41235 -21.61361 -21.37959 -19.94465 -19.07985 -18.52495 -18.33353 -17.72767 -17.59107 -17.29960 -17.02880 -16.24587 -15.97032 -15.84251 -15.66589 -15.44453 -15.29913 -15.24771 -14.85390 -14.54177 -14.40884 -14.31062 -14.23343 -13.64124 -13.45731 -13.27362 -12.98760 -12.83822 -12.72713 -12.56866 -12.37420 -12.24973 -12.09135 -11.98118 -11.59132 -11.50837 -11.46849 -11.27829 -10.97255 -10.82414 -10.73685 -10.65183 -10.51661 -9.71089 -8.84127 -8.13808 -5.45872 1.31312 1.42780 1.45276 1.50965 1.54991 1.70277 2.29167 2.44516 2.89543 3.02816 3.09678 3.33756 3.38954 3.63625 3.71602 3.75713 3.81957 3.85199 3.93819 4.02894 4.04294 4.11933 4.37279 4.39424 4.51804 4.59388 4.61874 4.70651 4.82120 4.82662 4.85303 4.92526 4.93961 4.96862 4.98250 5.03890 5.13793 5.23017 5.31802 5.44976 5.52352 5.59278 5.86483 5.90403 6.15575 6.42426 6.48015 6.96631 7.17447 7.30210 7.66750 8.06357 9.06414 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.002300 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.950717 B =12171.561570 C =12673.500870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.040 4.040 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.315 1.315 6 H -0.258 1.258 7 C -0.250 4.250 8 H 0.043 0.957 9 N -0.619 5.619 10 C 0.149 3.851 11 C -0.092 4.092 12 C -0.118 4.118 13 C -0.159 4.159 14 C 0.079 3.921 15 H 0.115 0.885 16 N -0.680 5.680 17 C 0.508 3.492 18 O -0.577 6.577 19 C 0.055 3.945 20 H 0.129 0.871 21 C -0.139 4.139 22 C -0.133 4.133 23 C 0.047 3.953 24 H 0.142 0.858 25 C 0.514 3.486 26 N -0.824 5.824 27 O -0.589 6.589 28 O -0.368 6.368 29 C -0.087 4.087 30 C 0.125 3.875 31 H 0.261 0.739 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.417 0.583 39 H 0.137 0.863 40 H 0.084 0.916 41 H 0.144 0.856 42 H 0.064 0.936 43 H 0.423 0.577 44 H 0.411 0.589 45 H 0.090 0.910 46 H 0.051 0.949 47 H 0.041 0.959 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.599 6.296 -22.012 32.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.234 4.234 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.244 1.244 6 H -0.183 1.183 7 C -0.380 4.380 8 H 0.061 0.939 9 N -0.343 5.343 10 C 0.024 3.976 11 C -0.131 4.131 12 C -0.120 4.120 13 C -0.197 4.197 14 C -0.027 4.027 15 H 0.133 0.867 16 N -0.333 5.333 17 C 0.295 3.705 18 O -0.455 6.455 19 C -0.006 4.006 20 H 0.146 0.854 21 C -0.176 4.176 22 C -0.171 4.171 23 C -0.013 4.013 24 H 0.159 0.841 25 C 0.299 3.701 26 N -0.390 5.390 27 O -0.469 6.469 28 O -0.286 6.286 29 C -0.126 4.126 30 C 0.001 3.999 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.255 0.745 39 H 0.155 0.845 40 H 0.103 0.897 41 H 0.162 0.838 42 H 0.083 0.917 43 H 0.255 0.745 44 H 0.243 0.757 45 H 0.108 0.892 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 22.730 4.656 -21.520 31.645 hybrid contribution -0.446 0.774 0.157 0.907 sum 22.284 5.430 -21.363 31.344 Atomic orbital electron populations 1.69994 1.07649 1.27259 1.55735 1.26001 0.95887 1.01337 1.00212 0.85784 0.78750 0.79534 0.77710 1.19385 1.24419 1.18261 1.18850 0.87111 0.93349 1.38717 0.93877 1.44405 1.07571 1.35958 1.46414 1.21015 0.92021 0.90406 0.94137 1.21534 0.99684 0.96378 0.95502 1.21778 0.91093 0.99744 0.99344 1.23679 0.95630 1.00706 0.99677 1.21640 1.04253 0.97816 0.78990 0.86746 1.45172 1.61180 1.21439 1.05471 1.21168 0.76794 0.84778 0.87745 1.90726 1.46736 1.22652 1.85408 1.22950 1.02046 0.89604 0.86000 0.85391 1.23067 0.96902 0.96513 1.01142 1.23176 0.98083 0.98160 0.97660 1.23478 0.94290 0.91256 0.92306 0.84078 1.20698 0.81749 0.87471 0.80224 1.43505 1.41410 1.17418 1.36704 1.90805 1.69530 1.20674 1.65857 1.89179 1.72705 1.30274 1.36478 1.21471 0.97229 0.96669 0.97277 1.21357 0.96777 0.91861 0.89932 0.93005 0.93107 0.94065 0.89912 0.93528 0.86733 0.87145 0.74517 0.84467 0.89723 0.83841 0.91695 0.74453 0.75699 0.89171 0.92974 0.94131 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.26 13.97 21.65 0.30 -59.96 16 2 C -0.04 -2.32 5.23 84.86 0.44 -1.88 16 3 Si 0.95 45.08 24.40 68.60 1.67 46.75 16 4 H -0.27 -11.55 6.66 99.48 0.66 -10.89 16 5 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 6 H -0.26 -11.56 6.65 99.48 0.66 -10.90 16 7 C -0.25 -14.19 10.00 84.03 0.84 -13.35 16 8 H 0.04 2.72 8.06 -2.91 -0.02 2.70 16 9 N -0.62 -28.36 2.71 -698.92 -1.89 -30.25 16 10 C 0.15 5.63 6.52 86.43 0.56 6.19 16 11 C -0.09 -2.88 5.83 30.77 0.18 -2.71 16 12 C -0.12 -3.23 1.94 -52.17 -0.10 -3.33 16 13 C -0.16 -3.38 9.86 30.56 0.30 -3.08 16 14 C 0.08 1.97 6.14 44.95 0.28 2.24 16 15 H 0.11 3.37 7.40 -2.39 -0.02 3.36 16 16 N -0.68 -14.15 5.32 -442.76 -2.36 -16.50 16 17 C 0.51 13.11 6.95 87.66 0.61 13.72 16 18 O -0.58 -21.96 16.09 15.68 0.25 -21.71 16 19 C 0.05 0.94 3.84 30.22 0.12 1.05 16 20 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 21 C -0.14 -0.99 6.62 31.59 0.21 -0.78 16 22 C -0.13 -0.84 6.57 31.90 0.21 -0.63 16 23 C 0.05 0.61 3.76 30.53 0.11 0.73 16 24 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 25 C 0.51 9.29 7.48 87.66 0.66 9.94 16 26 N -0.82 -4.91 8.86 -173.53 -1.54 -6.45 16 27 O -0.59 -19.24 17.40 15.14 0.26 -18.98 16 28 O -0.37 -9.28 10.04 -121.20 -1.22 -10.50 16 29 C -0.09 -2.60 5.37 30.77 0.17 -2.43 16 30 C 0.13 4.89 4.22 86.43 0.37 5.25 16 31 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 32 H 0.05 2.01 7.92 -2.39 -0.02 1.99 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.42 5.92 7.12 -92.70 -0.66 5.26 16 39 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.08 0.73 7.69 -2.39 -0.02 0.71 16 41 H 0.14 -0.50 8.14 -2.38 -0.02 -0.52 16 42 H 0.06 0.71 8.05 -2.39 -0.02 0.69 16 43 H 0.42 -1.26 8.83 -92.71 -0.82 -2.08 16 44 H 0.41 2.16 8.93 -92.71 -0.83 1.33 16 45 H 0.09 1.91 6.75 -2.38 -0.02 1.89 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.04 1.48 7.27 -2.39 -0.02 1.46 16 48 H 0.05 2.14 4.32 -2.39 -0.01 2.13 16 Total: -1.00 -95.45 381.55 -0.94 -96.40 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -1.38 Total: 10.24 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 4.95 Total: 10.95 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -5.48 Total: -113.16 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.70 Total: -51.18 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Total: -95.45 -0.94 -96.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016833670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.619 kcal (2) G-P(sol) polarization free energy of solvation -95.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds