Wall clock time and date at job start Sat Apr 11 2020 05:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99870 * 2 1 4 4 H 1.48502 * 109.46803 * 274.92732 * 3 2 1 5 5 H 1.48502 * 109.47013 * 34.92809 * 3 2 1 6 6 H 1.48501 * 109.47151 * 154.92629 * 3 2 1 7 7 C 1.38810 * 120.00109 * 180.27073 * 2 1 3 8 8 H 1.07995 * 119.99836 * 339.14827 * 7 2 1 9 9 N 1.36936 * 119.99683 * 159.13930 * 7 2 1 10 10 C 1.47083 * 120.87568 * 153.45602 * 9 7 2 11 11 C 1.53706 * 108.27379 * 128.75709 * 10 9 7 12 12 N 1.46894 * 109.25647 * 54.07921 * 11 10 9 13 13 C 1.46904 * 110.99702 * 172.60535 * 12 11 10 14 14 H 1.09000 * 110.88137 * 65.00673 * 13 12 11 15 15 C 1.55158 * 111.00075 * 188.88466 * 13 12 11 16 16 C 1.54328 * 102.94037 * 153.58205 * 15 13 12 17 17 N 1.47021 * 107.26995 * 337.80091 * 16 15 13 18 18 C 1.34776 * 125.64997 * 178.99408 * 17 16 15 19 19 O 1.21284 * 120.00211 * 179.97438 * 18 17 16 20 20 C 1.50700 * 119.99877 * 359.97438 * 18 17 16 21 21 C 1.52992 * 109.47207 * 179.97438 * 20 18 17 22 22 H 1.09006 * 110.75571 * 57.01805 * 21 20 18 23 23 C 1.55305 * 110.85253 * 180.71298 * 21 20 18 24 24 C 1.54938 * 100.94599 * 152.32436 * 23 21 20 25 25 O 1.43643 * 105.13633 * 323.55542 * 24 23 21 26 26 C 1.43240 * 109.97165 * 24.42933 * 25 24 23 27 27 C 1.47466 * 108.72227 * 358.98259 * 17 16 15 28 28 C 1.46897 * 111.27422 * 296.75675 * 12 11 10 29 29 C 1.47080 * 120.88576 * 333.73633 * 9 7 2 30 30 H 0.96998 * 119.99661 * 359.72818 * 1 2 3 31 31 H 1.09001 * 109.62848 * 248.51818 * 10 9 7 32 32 H 1.08995 * 109.63110 * 9.10361 * 10 9 7 33 33 H 1.08997 * 109.64549 * 294.07476 * 11 10 9 34 34 H 1.09002 * 109.43843 * 173.95689 * 11 10 9 35 35 H 1.09003 * 110.72049 * 271.93692 * 15 13 12 36 36 H 1.08999 * 110.72282 * 35.21506 * 15 13 12 37 37 H 1.08997 * 109.88307 * 97.22058 * 16 15 13 38 38 H 1.09001 * 109.87756 * 218.23692 * 16 15 13 39 39 H 1.09005 * 109.46979 * 299.99650 * 20 18 17 40 40 H 1.08997 * 109.47487 * 59.99154 * 20 18 17 41 41 H 1.09006 * 111.12519 * 270.24382 * 23 21 20 42 42 H 1.09001 * 111.12287 * 34.40074 * 23 21 20 43 43 H 1.09006 * 110.31069 * 204.64543 * 24 23 21 44 44 H 1.09000 * 110.39694 * 82.51372 * 24 23 21 45 45 H 1.09001 * 109.83199 * 238.77970 * 26 25 24 46 46 H 1.08999 * 109.82906 * 117.80410 * 26 25 24 47 47 H 1.09008 * 110.34806 * 265.25177 * 27 17 16 48 48 H 1.09000 * 110.41221 * 142.91543 * 27 17 16 49 49 H 1.08999 * 109.49114 * 303.15150 * 28 12 11 50 50 H 1.08992 * 109.52100 * 183.08140 * 28 12 11 51 51 H 1.09006 * 109.62579 * 350.89522 * 29 9 7 52 52 H 1.08988 * 109.62812 * 111.47586 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3935 2.1065 -1.3949 5 1 1.5036 2.6204 0.8016 6 1 3.5960 1.4124 0.5933 7 6 2.0103 -1.2021 -0.0057 8 1 1.5234 -2.1083 0.3230 9 7 3.3123 -1.2389 -0.4282 10 6 4.2361 -2.2729 0.0624 11 6 4.9084 -2.9338 -1.1516 12 7 5.5260 -1.8960 -1.9879 13 6 6.3278 -2.4948 -3.0634 14 1 5.6954 -3.0489 -3.7570 15 6 7.1556 -1.4138 -3.8076 16 6 8.3573 -2.2137 -4.3533 17 7 8.4876 -3.4233 -3.5278 18 6 9.4082 -4.3932 -3.6953 19 8 9.4227 -5.3507 -2.9510 20 6 10.4197 -4.2881 -4.8075 21 6 11.3412 -5.5089 -4.7759 22 1 10.7642 -6.4305 -4.8533 23 6 12.4095 -5.4244 -5.9000 24 6 13.5630 -6.2463 -5.2720 25 8 13.5250 -5.9355 -3.8701 26 6 12.2088 -5.5096 -3.4989 27 6 7.4444 -3.3998 -2.4857 28 6 4.5157 -0.9791 -2.5324 29 6 3.8258 -0.2418 -1.3798 30 1 -0.4849 0.8400 0.0040 31 1 4.9929 -1.8154 0.6997 32 1 3.6811 -3.0215 0.6277 33 1 4.1626 -3.4744 -1.7343 34 1 5.6752 -3.6283 -0.8083 35 1 6.5782 -0.9803 -4.6242 36 1 7.4892 -0.6399 -3.1164 37 1 8.1771 -2.4913 -5.3918 38 1 9.2647 -1.6140 -4.2820 39 1 9.9026 -4.2474 -5.7662 40 1 11.0120 -3.3826 -4.6756 41 1 12.0508 -5.8891 -6.8185 42 1 12.7131 -4.3926 -6.0766 43 1 14.5190 -5.9452 -5.7004 44 1 13.3984 -7.3125 -5.4277 45 1 12.2499 -4.5044 -3.0794 46 1 11.7893 -6.2001 -2.7672 47 1 7.8393 -2.9732 -1.5636 48 1 7.0632 -4.4051 -2.3067 49 1 3.7753 -1.5469 -3.0959 50 1 4.9972 -0.2558 -3.1904 51 1 2.9991 0.3531 -1.7683 52 1 4.5437 0.4071 -0.8784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052002171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:05:46 Heat of formation + Delta-G solvation = -63.709387 kcal Electronic energy + Delta-G solvation = -30026.567592 eV Core-core repulsion = 26025.872828 eV Total energy + Delta-G solvation = -4000.694764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.44656 -40.45409 -39.68503 -38.19957 -35.89082 -34.57535 -33.68204 -32.19976 -31.79995 -30.85498 -29.89738 -28.43585 -27.17621 -25.32335 -24.31477 -23.91240 -23.29071 -21.88259 -21.64767 -20.97284 -20.04906 -18.90307 -18.21324 -17.82999 -17.65914 -17.17270 -16.78933 -16.38000 -16.05946 -15.91096 -15.80136 -15.51690 -15.49706 -15.29870 -14.86859 -14.48420 -14.40152 -14.19800 -14.04497 -13.79466 -13.73422 -13.58035 -13.48802 -13.09874 -12.83895 -12.59601 -12.54358 -12.46280 -12.19977 -12.13920 -12.10255 -11.89768 -11.83472 -11.70504 -11.66352 -11.53338 -11.40932 -10.91937 -10.73657 -10.49808 -9.69041 -9.44024 -8.91819 -8.17248 -5.49166 1.29720 1.43161 1.52659 1.59874 1.86730 2.41476 2.84378 2.96628 3.06905 3.26055 3.34641 3.48035 3.68035 3.71743 3.84586 3.92294 4.04513 4.11026 4.20649 4.26296 4.29397 4.34296 4.35386 4.42491 4.45680 4.46984 4.50932 4.57646 4.62594 4.67549 4.71640 4.80934 4.82103 4.82847 4.88992 4.90604 4.94464 4.96683 5.00018 5.05428 5.06548 5.19496 5.25845 5.27529 5.28392 5.81070 6.02418 6.04614 6.07091 6.17954 6.50691 6.88665 7.11669 7.59887 8.01890 9.02586 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034607 B = 0.002034 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.890280 B =13760.783201 C =14100.209208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.038 4.038 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.312 1.312 6 H -0.261 1.261 7 C -0.250 4.250 8 H 0.049 0.951 9 N -0.624 5.624 10 C 0.147 3.853 11 C 0.051 3.949 12 N -0.524 5.524 13 C 0.070 3.930 14 H 0.051 0.949 15 C -0.119 4.119 16 C 0.102 3.898 17 N -0.619 5.619 18 C 0.518 3.482 19 O -0.586 6.586 20 C -0.115 4.115 21 C -0.105 4.105 22 H 0.078 0.922 23 C -0.139 4.139 24 C 0.038 3.962 25 O -0.415 6.415 26 C 0.060 3.940 27 C 0.119 3.881 28 C 0.056 3.944 29 C 0.125 3.875 30 H 0.262 0.738 31 H 0.038 0.962 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.049 0.951 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.023 0.977 50 H 0.104 0.896 51 H 0.054 0.946 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.289 -5.432 -18.620 33.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.232 4.232 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.241 1.241 6 H -0.186 1.186 7 C -0.380 4.380 8 H 0.067 0.933 9 N -0.349 5.349 10 C 0.022 3.978 11 C -0.078 4.078 12 N -0.249 5.249 13 C -0.039 4.039 14 H 0.069 0.931 15 C -0.157 4.157 16 C -0.020 4.020 17 N -0.353 5.353 18 C 0.309 3.691 19 O -0.466 6.466 20 C -0.154 4.154 21 C -0.124 4.124 22 H 0.097 0.903 23 C -0.176 4.176 24 C -0.038 4.038 25 O -0.336 6.336 26 C -0.017 4.017 27 C -0.005 4.005 28 C -0.073 4.073 29 C 0.000 4.000 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.041 0.959 50 H 0.122 0.878 51 H 0.072 0.928 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 27.712 -5.664 -17.804 33.422 hybrid contribution -1.440 0.042 0.276 1.467 sum 26.272 -5.623 -17.527 32.078 Atomic orbital electron populations 1.69979 1.07463 1.27277 1.55687 1.25929 0.95899 1.01130 1.00271 0.85850 0.78636 0.79835 0.77746 1.19522 1.24131 1.18595 1.18855 0.86756 0.93562 1.38823 0.93315 1.44563 1.07736 1.33228 1.49346 1.21240 0.91540 0.90720 0.94267 1.22555 0.97047 0.93172 0.95015 1.61938 1.24077 1.18206 1.20719 1.22759 0.93454 0.95699 0.92004 0.93081 1.22740 0.95308 0.97129 1.00550 1.22301 0.99628 0.84618 0.95407 1.48589 1.31304 1.22735 1.32663 1.21101 0.81373 0.80499 0.86169 1.90714 1.73731 1.33515 1.48677 1.21686 0.95585 1.00219 0.97916 1.22446 0.96306 0.98926 0.94704 0.90336 1.23331 0.93491 1.02621 0.98200 1.23618 1.00680 0.99389 0.80074 1.88379 1.30749 1.87649 1.26773 1.23127 0.81856 0.99362 0.97346 1.22029 0.87769 0.99105 0.91563 1.22444 0.92711 0.95967 0.96155 1.21476 0.96107 0.91877 0.90557 0.92930 0.94444 0.92380 0.96071 0.89230 0.88162 0.89442 0.88666 0.88604 0.85315 0.86163 0.87525 0.88370 0.88135 0.92085 0.91731 0.93293 0.91244 0.92395 0.95882 0.87817 0.92804 0.94396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.37 13.97 21.65 0.30 -60.07 16 2 C -0.04 -2.21 5.24 84.86 0.44 -1.77 16 3 Si 0.95 46.19 24.32 68.60 1.67 47.86 16 4 H -0.27 -12.05 6.70 99.48 0.67 -11.38 16 5 H -0.31 -15.50 7.11 99.48 0.71 -14.80 16 6 H -0.26 -12.26 6.42 99.48 0.64 -11.62 16 7 C -0.25 -14.35 10.08 84.03 0.85 -13.50 16 8 H 0.05 3.07 8.05 -2.91 -0.02 3.05 16 9 N -0.62 -29.50 2.82 -697.22 -1.96 -31.46 16 10 C 0.15 5.78 6.72 86.51 0.58 6.36 16 11 C 0.05 1.63 5.47 86.54 0.47 2.11 16 12 N -0.52 -14.81 4.53 -860.97 -3.90 -18.71 16 13 C 0.07 1.48 2.71 46.31 0.13 1.61 16 14 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 15 C -0.12 -1.63 5.47 31.78 0.17 -1.45 16 16 C 0.10 0.99 6.49 86.73 0.56 1.55 16 17 N -0.62 -10.80 3.33 -811.68 -2.70 -13.50 16 18 C 0.52 10.00 7.64 87.66 0.67 10.67 16 19 O -0.59 -16.88 15.15 -3.04 -0.05 -16.92 16 20 C -0.11 -1.11 4.29 29.85 0.13 -0.99 16 21 C -0.10 -1.37 2.59 -9.54 -0.02 -1.39 16 22 H 0.08 1.27 8.05 -2.38 -0.02 1.25 16 23 C -0.14 -1.00 6.62 32.05 0.21 -0.79 16 24 C 0.04 0.45 7.78 72.64 0.56 1.02 16 25 O -0.42 -8.56 11.36 -148.98 -1.69 -10.25 16 26 C 0.06 1.16 6.38 72.45 0.46 1.62 16 27 C 0.12 2.64 5.19 86.85 0.45 3.09 16 28 C 0.06 1.76 5.50 86.39 0.48 2.24 16 29 C 0.12 5.13 4.34 86.35 0.37 5.50 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 2.32 7.95 -2.39 -0.02 2.30 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 2.47 6.70 -2.39 -0.02 2.45 16 35 H 0.10 1.06 7.94 -2.39 -0.02 1.04 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.13 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.12 0.67 8.07 -2.39 -0.02 0.65 16 41 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.10 0.42 8.04 -2.39 -0.02 0.40 16 43 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 1.21 7.76 -2.39 -0.02 1.19 16 46 H 0.05 1.21 7.72 -2.39 -0.02 1.19 16 47 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 48 H 0.06 1.49 7.75 -2.39 -0.02 1.47 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.10 2.51 6.97 -2.39 -0.02 2.49 16 51 H 0.05 2.42 4.65 -2.38 -0.01 2.41 16 52 H 0.04 1.54 6.84 -2.39 -0.02 1.52 16 Total: -1.00 -77.33 390.73 -1.03 -78.37 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.77 Total: 8.80 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 6.52 Total: 15.87 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -8.26 Total: -123.73 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -1.74 Total: -27.17 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -77.33 -1.03 -78.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052002171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.657 kcal (2) G-P(sol) polarization free energy of solvation -77.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds