Wall clock time and date at job start Sat Apr 11 2020 05:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47172 * 240.00430 * 3 2 1 5 5 H 1.48501 * 109.47118 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47260 * 120.00261 * 3 2 1 7 7 C 1.37882 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99940 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47036 * 185.00761 * 9 7 2 11 11 C 1.46960 * 111.00506 * 295.17694 * 10 9 7 12 12 C 1.53046 * 109.36728 * 183.18878 * 11 10 9 13 13 N 1.46958 * 109.36359 * 301.60051 * 12 11 10 14 14 C 1.46900 * 110.99500 * 183.18992 * 13 12 11 15 15 N 1.46500 * 109.46803 * 154.99972 * 14 13 12 16 16 C 1.46768 * 124.35156 * 269.94817 * 15 14 13 17 17 C 1.54482 * 105.47817 * 197.03703 * 16 15 14 18 18 H 1.08995 * 111.00095 * 216.45533 * 17 16 15 19 19 C 1.52998 * 110.96610 * 92.70082 * 17 16 15 20 20 H 1.09000 * 110.27886 * 305.53415 * 19 17 16 21 21 C 1.54951 * 110.39385 * 183.38353 * 19 17 16 22 22 C 1.55452 * 100.99269 * 204.65033 * 21 19 17 23 23 C 1.54381 * 102.18260 * 34.03901 * 22 21 19 24 24 O 1.43232 * 107.66811 * 338.74030 * 23 22 21 25 25 C 1.54634 * 101.76074 * 334.58545 * 17 16 15 26 26 C 1.34419 * 124.35025 * 89.97493 * 15 14 13 27 27 O 1.21273 * 124.94555 * 359.60705 * 26 15 14 28 28 C 1.46957 * 110.88279 * 59.32270 * 13 12 11 29 29 C 1.46961 * 111.00326 * 58.98045 * 10 9 7 30 30 H 0.97002 * 120.00002 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.47371 * 65.00612 * 9 7 2 32 32 H 1.09002 * 109.47320 * 305.00883 * 9 7 2 33 33 H 1.09003 * 109.48516 * 63.21714 * 11 10 9 34 34 H 1.09004 * 109.48478 * 303.15841 * 11 10 9 35 35 H 1.09003 * 109.48793 * 181.63257 * 12 11 10 36 36 H 1.09003 * 109.50662 * 61.57718 * 12 11 10 37 37 H 1.08999 * 109.47709 * 35.00394 * 14 13 12 38 38 H 1.08998 * 109.47583 * 274.99545 * 14 13 12 39 39 H 1.08999 * 110.24235 * 78.03474 * 16 15 14 40 40 H 1.09002 * 110.24536 * 316.04126 * 16 15 14 41 41 H 1.09000 * 111.12226 * 322.52331 * 21 19 17 42 42 H 1.08999 * 111.11887 * 86.63500 * 21 19 17 43 43 H 1.08996 * 110.82855 * 275.89459 * 22 21 19 44 44 H 1.09003 * 110.92143 * 152.22619 * 22 21 19 45 45 H 1.09004 * 109.82888 * 219.18116 * 23 22 21 46 46 H 1.09000 * 109.83126 * 98.30362 * 23 22 21 47 47 H 1.09003 * 110.48008 * 143.47638 * 25 17 16 48 48 H 1.09000 * 110.48571 * 266.11313 * 25 17 16 49 49 H 1.09002 * 109.48779 * 60.64319 * 28 13 12 50 50 H 1.08995 * 109.48747 * 180.71341 * 28 13 12 51 51 H 1.09004 * 109.48408 * 296.78166 * 29 10 9 52 52 H 1.08997 * 109.48888 * 56.81805 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2011 -3.6130 0.1188 11 6 3.0790 -3.6862 -1.0574 12 6 3.9976 -4.9037 -0.9301 13 7 4.7855 -4.7926 0.3054 14 6 5.7354 -5.9066 0.4259 15 7 6.8619 -5.4987 1.2691 16 6 8.0894 -4.8718 0.7649 17 6 9.1266 -5.0251 1.8994 18 1 9.7716 -4.1486 1.9600 19 6 9.9541 -6.2989 1.7161 20 1 9.2990 -7.1654 1.6265 21 6 10.9310 -6.4839 2.9046 22 6 12.0364 -7.3566 2.2466 23 6 12.0518 -6.8249 0.7974 24 8 10.7929 -6.1859 0.5554 25 6 8.2173 -5.1305 3.1457 26 6 6.9042 -5.6510 2.6040 27 8 6.0189 -6.1358 3.2762 28 6 3.9076 -4.7195 1.4817 29 6 2.9890 -3.5020 1.3544 30 1 -0.4850 0.8401 0.0004 31 1 0.6937 -2.5961 -0.9334 32 1 0.5585 -2.5196 0.8397 33 1 3.6821 -2.7803 -1.1179 34 1 2.4727 -3.7807 -1.9584 35 1 4.6695 -4.9435 -1.7875 36 1 3.3958 -5.8119 -0.8972 37 1 6.1025 -6.1798 -0.5634 38 1 5.2353 -6.7635 0.8773 39 1 7.9147 -3.8169 0.5535 40 1 8.4337 -5.3851 -0.1330 41 1 11.3330 -5.5262 3.2353 42 1 10.4511 -7.0114 3.7289 43 1 11.7626 -8.4114 2.2700 44 1 12.9998 -7.1939 2.7298 45 1 12.1860 -7.6529 0.1012 46 1 12.8612 -6.1051 0.6761 47 1 8.6377 -5.8320 3.8663 48 1 8.0802 -4.1500 3.6017 49 1 3.3044 -5.6255 1.5421 50 1 4.5138 -4.6251 2.3825 51 1 3.5910 -2.5940 1.3213 52 1 2.3171 -3.4618 2.2117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120357048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:52 Heat of formation + Delta-G solvation = -60.392208 kcal Electronic energy + Delta-G solvation = -30499.527111 eV Core-core repulsion = 26498.976190 eV Total energy + Delta-G solvation = -4000.550921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94263 -39.51619 -38.41447 -36.45946 -35.21154 -33.05512 -32.46099 -31.92242 -30.27174 -29.22735 -27.92419 -27.35797 -25.55482 -23.79357 -23.26676 -22.79178 -22.09620 -21.44253 -20.79628 -19.39275 -19.04473 -17.41267 -17.01285 -16.59292 -16.41297 -16.00566 -15.64741 -15.21458 -14.83825 -14.59680 -14.44099 -14.18573 -14.12074 -13.88191 -13.60088 -13.49781 -13.44094 -13.11443 -12.90027 -12.67781 -12.38314 -12.09368 -11.98609 -11.82706 -11.74749 -11.73797 -11.59785 -11.23091 -11.03863 -11.03519 -10.85515 -10.60696 -10.48207 -10.35379 -10.02030 -9.90603 -9.83025 -9.80486 -9.53448 -8.85400 -8.39537 -8.09478 -7.12284 -5.98862 -4.07681 2.54065 2.93208 3.25901 3.31231 3.35781 3.38624 3.97663 4.07063 4.20046 4.24772 4.37529 4.40641 4.43797 4.60976 4.72348 4.77667 4.99436 5.08432 5.10707 5.13490 5.23371 5.27815 5.30974 5.31492 5.33812 5.38067 5.41918 5.50380 5.56995 5.61136 5.66234 5.67832 5.80485 5.85581 5.93749 6.07527 6.21913 6.36429 6.43652 6.59718 6.67011 6.80900 6.90761 7.07132 7.26282 7.29057 7.43651 7.56189 7.93885 8.10174 8.15768 8.33476 8.34180 9.02726 9.58730 11.06118 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002471 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.081402 B =11329.824386 C =11823.425110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.187 3.813 10 N -0.544 5.544 11 C 0.065 3.935 12 C 0.065 3.935 13 N -0.553 5.553 14 C 0.291 3.709 15 N -0.604 5.604 16 C 0.114 3.886 17 C -0.099 4.099 18 H 0.104 0.896 19 C 0.090 3.910 20 H 0.073 0.927 21 C -0.153 4.153 22 C -0.157 4.157 23 C 0.051 3.949 24 O -0.376 6.376 25 C -0.149 4.149 26 C 0.516 3.484 27 O -0.531 6.531 28 C 0.063 3.937 29 C 0.067 3.933 30 H 0.262 0.738 31 H 0.027 0.973 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.034 0.966 50 H 0.073 0.927 51 H 0.047 0.953 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.207 -15.100 3.026 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.062 3.938 10 N -0.268 5.268 11 C -0.064 4.064 12 C -0.063 4.063 13 N -0.280 5.280 14 C 0.080 3.920 15 N -0.339 5.339 16 C -0.010 4.010 17 C -0.118 4.118 18 H 0.122 0.878 19 C 0.033 3.967 20 H 0.091 0.909 21 C -0.190 4.190 22 C -0.195 4.195 23 C -0.025 4.025 24 O -0.296 6.296 25 C -0.189 4.189 26 C 0.304 3.696 27 O -0.407 6.407 28 C -0.064 4.064 29 C -0.062 4.062 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.129 0.871 49 H 0.053 0.947 50 H 0.091 0.909 51 H 0.065 0.935 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 24.435 -15.176 3.127 28.934 hybrid contribution 0.584 1.078 0.116 1.232 sum 25.018 -14.098 3.243 28.900 Atomic orbital electron populations 1.69937 1.06008 1.26872 1.50267 1.24969 0.94762 0.99126 0.94997 0.86697 0.79658 0.83291 0.78610 1.20282 1.21264 1.20296 1.21722 0.93348 0.92040 1.51481 0.92438 1.19725 0.90880 0.85525 0.97709 1.62686 1.16987 1.46299 1.00855 1.21915 0.94146 0.95813 0.94562 1.22169 0.94848 0.98818 0.90515 1.61916 1.18892 1.43401 1.03819 1.21717 0.84949 0.91107 0.94236 1.48355 1.17499 1.60522 1.07488 1.22058 0.82594 0.99287 0.97017 1.22285 0.95999 0.98778 0.94719 0.87787 1.22919 0.92103 0.96980 0.84747 0.90919 1.23351 0.96180 1.01137 0.98365 1.23147 1.00104 1.00475 0.95734 1.23106 0.86639 0.96914 0.95882 1.88418 1.26032 1.78363 1.36756 1.22397 0.93918 1.04489 0.98099 1.20813 0.88635 0.77859 0.82342 1.90736 1.42644 1.45258 1.62110 1.22280 0.93773 0.98425 0.91973 1.21907 0.94811 0.95718 0.93740 0.92810 0.95506 0.94799 0.93521 0.91316 0.91215 0.94495 0.89444 0.92184 0.90383 0.89763 0.89848 0.89664 0.90510 0.89901 0.91458 0.91248 0.88110 0.87140 0.94730 0.90867 0.93487 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.55 -15.31 7.66 -34.44 -0.26 -15.57 16 8 H 0.06 1.61 5.82 -52.48 -0.31 1.31 16 9 C 0.19 4.95 5.14 -4.98 -0.03 4.93 16 10 N -0.54 -12.17 4.92 -235.91 -1.16 -13.33 16 11 C 0.06 1.28 5.32 -3.77 -0.02 1.26 16 12 C 0.06 1.02 5.53 -3.77 -0.02 1.00 16 13 N -0.55 -8.85 4.81 -238.37 -1.15 -10.00 16 14 C 0.29 3.81 5.78 -63.32 -0.37 3.44 16 15 N -0.60 -7.31 3.15 -175.90 -0.55 -7.86 16 16 C 0.11 1.08 6.86 -3.12 -0.02 1.06 16 17 C -0.10 -0.74 2.92 -88.98 -0.26 -1.00 16 18 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 19 C 0.09 0.65 2.91 -25.70 -0.07 0.57 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 21 C -0.15 -0.80 5.78 -24.40 -0.14 -0.94 16 22 C -0.16 -0.73 7.03 -24.70 -0.17 -0.90 16 23 C 0.05 0.31 7.79 37.88 0.30 0.60 16 24 O -0.38 -3.20 10.68 -35.23 -0.38 -3.57 16 25 C -0.15 -1.28 6.28 -26.74 -0.17 -1.45 16 26 C 0.52 6.76 7.31 -10.86 -0.08 6.68 16 27 O -0.53 -9.06 16.19 5.56 0.09 -8.97 16 28 C 0.06 1.15 5.39 -3.77 -0.02 1.13 16 29 C 0.07 1.43 5.24 -3.77 -0.02 1.41 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.03 0.75 8.12 -51.93 -0.42 0.33 16 32 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 1.02 6.78 -51.93 -0.35 0.67 16 34 H 0.07 1.33 8.12 -51.93 -0.42 0.90 16 35 H 0.07 0.93 7.98 -51.93 -0.41 0.51 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.94 7.75 -51.93 -0.40 0.54 16 38 H 0.06 0.84 7.69 -51.93 -0.40 0.45 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.77 7.63 -51.93 -0.40 0.37 16 41 H 0.08 0.39 8.06 -51.93 -0.42 -0.03 16 42 H 0.08 0.40 7.64 -51.93 -0.40 0.00 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.10 0.72 6.79 -51.93 -0.35 0.37 16 48 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.03 0.65 8.12 -51.93 -0.42 0.22 16 50 H 0.07 1.37 5.92 -51.93 -0.31 1.07 16 51 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 52 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -32.88 397.18 -12.04 -44.92 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -9.14 Total: -2.00 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.46 Total: 3.94 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -2.12 Total: -57.09 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.29 Total: -12.54 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.88 -12.04 -44.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120357048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.473 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds