Wall clock time and date at job start Sat Apr 11 2020 05:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99948 * 2 1 4 4 H 1.48506 * 109.47087 * 269.99850 * 3 2 1 5 5 H 1.48499 * 109.47219 * 29.99772 * 3 2 1 6 6 H 1.48499 * 109.47420 * 150.00114 * 3 2 1 7 7 C 1.37877 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99663 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99963 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.46956 * 111.00293 * 169.99898 * 10 9 7 12 12 C 1.53056 * 109.38342 * 183.17592 * 11 10 9 13 13 N 1.46963 * 109.35944 * 301.62902 * 12 11 10 14 14 C 1.46903 * 110.99595 * 183.16796 * 13 12 11 15 15 N 1.46494 * 109.47032 * 81.17983 * 14 13 12 16 16 C 1.46761 * 124.35316 * 89.99924 * 15 14 13 17 17 C 1.54473 * 105.47851 * 197.01292 * 16 15 14 18 18 H 1.08996 * 110.97372 * 216.42724 * 17 16 15 19 19 C 1.53000 * 110.96744 * 92.70061 * 17 16 15 20 20 H 1.09008 * 110.27475 * 60.64059 * 19 17 16 21 21 C 1.54949 * 110.31142 * 182.83247 * 19 17 16 22 22 C 1.55309 * 100.93864 * 155.36257 * 21 19 17 23 23 C 1.54386 * 102.25514 * 325.86876 * 22 21 19 24 24 O 1.43233 * 107.58763 * 21.35691 * 23 22 21 25 25 C 1.54628 * 101.76506 * 334.58755 * 17 16 15 26 26 C 1.34426 * 124.34978 * 269.69810 * 15 14 13 27 27 O 1.21284 * 124.93768 * 359.57746 * 26 15 14 28 28 C 1.46956 * 110.89784 * 59.28921 * 13 12 11 29 29 C 1.46962 * 110.99604 * 293.79709 * 10 9 7 30 30 H 0.97008 * 119.99961 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47474 * 59.99889 * 9 7 2 32 32 H 1.09001 * 109.47284 * 299.99683 * 9 7 2 33 33 H 1.09002 * 109.48806 * 303.15319 * 11 10 9 34 34 H 1.09002 * 109.49141 * 63.19591 * 11 10 9 35 35 H 1.08992 * 109.49038 * 61.57437 * 12 11 10 36 36 H 1.08994 * 109.48641 * 181.64718 * 12 11 10 37 37 H 1.08998 * 109.47027 * 201.18321 * 14 13 12 38 38 H 1.08999 * 109.46783 * 321.17756 * 14 13 12 39 39 H 1.08995 * 110.24617 * 316.02137 * 16 15 14 40 40 H 1.09005 * 110.24024 * 78.01467 * 16 15 14 41 41 H 1.08992 * 111.12477 * 273.28239 * 21 19 17 42 42 H 1.08997 * 111.11817 * 37.44814 * 21 19 17 43 43 H 1.09004 * 110.84595 * 207.68300 * 22 21 19 44 44 H 1.08997 * 111.02234 * 84.13938 * 22 21 19 45 45 H 1.08997 * 109.82851 * 261.84410 * 23 22 21 46 46 H 1.08994 * 109.90292 * 140.91502 * 23 22 21 47 47 H 1.09000 * 110.48915 * 143.47134 * 25 17 16 48 48 H 1.09004 * 110.48519 * 265.98539 * 25 17 16 49 49 H 1.09002 * 109.48806 * 180.71933 * 28 13 12 50 50 H 1.09002 * 109.50952 * 60.66527 * 28 13 12 51 51 H 1.09001 * 109.48625 * 296.77747 * 29 10 9 52 52 H 1.09003 * 109.48941 * 56.82355 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5206 -4.8939 0.2401 12 6 2.5557 -6.0190 0.3128 13 7 3.3200 -6.0597 -0.9419 14 6 4.2746 -7.1763 -0.9407 15 7 3.5781 -8.4145 -1.2981 16 6 3.4235 -8.9112 -2.6704 17 6 2.2894 -9.9579 -2.6047 18 1 2.4862 -10.7895 -3.2812 19 6 0.9342 -9.3166 -2.9098 20 1 0.9356 -8.8896 -3.9128 21 6 -0.1998 -10.3633 -2.7703 22 6 -1.4148 -9.4433 -2.4712 23 6 -0.7710 -8.3077 -1.6468 24 8 0.6315 -8.3037 -1.9373 25 6 2.3661 -10.4137 -1.1291 26 6 3.0034 -9.2448 -0.4108 27 8 2.9948 -9.0793 0.7907 28 6 4.0049 -4.7815 -1.1802 29 6 2.9695 -3.6568 -1.2530 30 1 -0.4850 0.8401 0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 0.9724 -4.8428 1.1808 34 1 0.8253 -5.0916 -0.5758 35 1 3.2343 -5.8356 1.1458 36 1 2.0474 -6.9718 0.4603 37 1 5.0635 -6.9805 -1.6668 38 1 4.7122 -7.2791 0.0523 39 1 3.1458 -8.0954 -3.3378 40 1 4.3485 -9.3781 -3.0089 41 1 -0.3432 -10.9135 -3.7001 42 1 -0.0074 -11.0423 -1.9397 43 1 -2.1659 -9.9714 -1.8836 44 1 -1.8481 -9.0557 -3.3932 45 1 -0.9279 -8.4882 -0.5834 46 1 -1.2097 -7.3504 -1.9280 47 1 1.3676 -10.6074 -0.7372 48 1 2.9904 -11.3024 -1.0364 49 1 4.5531 -4.8326 -2.1209 50 1 4.7001 -4.5834 -0.3643 51 1 2.2909 -3.8406 -2.0860 52 1 3.4772 -2.7036 -1.4010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120357050.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:58 Heat of formation + Delta-G solvation = -54.664344 kcal Electronic energy + Delta-G solvation = -31576.216353 eV Core-core repulsion = 27575.913811 eV Total energy + Delta-G solvation = -4000.302542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87859 -39.20325 -38.28782 -36.30229 -35.02507 -32.88713 -32.30947 -31.84439 -30.26699 -29.12372 -27.96013 -27.31842 -25.62377 -23.68431 -23.13016 -22.79202 -21.83140 -21.25759 -20.42727 -19.39977 -19.02968 -17.32538 -16.73488 -16.48341 -16.23988 -15.86871 -15.54530 -15.02041 -14.67046 -14.50934 -14.45598 -14.10372 -14.05507 -13.77097 -13.46263 -13.42336 -13.32317 -13.09737 -12.97319 -12.51259 -12.11431 -12.07253 -11.91316 -11.87832 -11.61520 -11.42517 -11.37694 -11.13673 -11.02075 -10.88810 -10.78182 -10.64380 -10.56672 -10.27560 -10.25255 -9.71333 -9.67295 -9.52077 -9.11071 -8.75047 -8.38712 -7.99446 -7.10790 -5.97375 -3.98447 2.65734 3.10367 3.34564 3.40630 3.45359 3.61444 4.05307 4.17186 4.30590 4.33574 4.46952 4.47902 4.64947 4.73278 4.84653 5.05249 5.06889 5.08699 5.16060 5.29287 5.31337 5.37549 5.38359 5.40410 5.46264 5.53516 5.58460 5.60083 5.69045 5.72551 5.75173 5.78402 5.89279 5.92654 5.98306 6.04099 6.18649 6.44994 6.51495 6.63017 6.73215 6.75617 6.99071 7.17137 7.32923 7.37237 7.44488 7.51690 7.86811 8.17764 8.30151 8.31307 8.64167 9.09353 9.65434 11.13549 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.003010 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.713502 B = 9300.883340 C =10221.639593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.061 3.939 12 C 0.072 3.928 13 N -0.546 5.546 14 C 0.293 3.707 15 N -0.597 5.597 16 C 0.116 3.884 17 C -0.102 4.102 18 H 0.106 0.894 19 C 0.086 3.914 20 H 0.075 0.925 21 C -0.153 4.153 22 C -0.155 4.155 23 C 0.050 3.950 24 O -0.354 6.354 25 C -0.146 4.146 26 C 0.530 3.470 27 O -0.537 6.537 28 C 0.063 3.937 29 C 0.071 3.929 30 H 0.260 0.740 31 H -0.010 1.010 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.029 0.971 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.068 0.932 50 H 0.039 0.961 51 H 0.027 0.973 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 -25.417 -9.822 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.068 4.068 12 C -0.056 4.056 13 N -0.273 5.273 14 C 0.081 3.919 15 N -0.331 5.331 16 C -0.008 4.008 17 C -0.121 4.121 18 H 0.124 0.876 19 C 0.028 3.972 20 H 0.093 0.907 21 C -0.191 4.191 22 C -0.193 4.193 23 C -0.026 4.026 24 O -0.273 6.273 25 C -0.187 4.187 26 C 0.318 3.682 27 O -0.414 6.414 28 C -0.065 4.065 29 C -0.058 4.058 30 H 0.070 0.930 31 H 0.008 0.992 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.087 0.913 50 H 0.057 0.943 51 H 0.045 0.955 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.479 -24.978 -9.058 26.797 hybrid contribution -0.029 0.882 -0.242 0.915 sum 3.449 -24.096 -9.300 26.058 Atomic orbital electron populations 1.69968 1.06061 1.26651 1.51214 1.24992 0.94849 0.99262 0.95561 0.86514 0.79827 0.83201 0.77961 1.20785 1.21306 1.19801 1.21169 0.93433 0.90002 1.49753 0.91953 1.19677 0.90076 0.87341 0.95980 1.62274 1.28152 1.02875 1.33093 1.22018 0.94916 0.89782 1.00051 1.22126 0.95822 0.98918 0.88762 1.61914 1.26075 1.02985 1.36359 1.21660 0.89704 0.80647 0.99872 1.48152 1.55887 1.21745 1.07333 1.21972 0.97165 0.97077 0.84537 1.22376 0.94573 0.98094 0.97017 0.87559 1.22934 0.93011 0.87962 0.93267 0.90731 1.23344 0.94584 0.98264 1.02888 1.23114 0.98288 0.96833 1.01059 1.23098 0.81832 0.98436 0.99274 1.88642 1.23085 1.55074 1.60480 1.22332 1.03266 0.97888 0.95173 1.20628 0.77093 0.84087 0.86405 1.90716 1.59881 1.76861 1.13964 1.22185 0.96188 0.88413 0.99760 1.21939 0.95373 0.97103 0.91371 0.93005 0.99209 0.95356 0.91539 0.95299 0.94864 0.90479 0.89722 0.92353 0.89846 0.91454 0.90004 0.90113 0.90237 0.90600 0.91573 0.91328 0.88162 0.88384 0.91322 0.94315 0.95474 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.50 -14.55 8.47 -34.44 -0.29 -14.85 16 8 H 0.06 1.77 7.13 -52.49 -0.37 1.40 16 9 C 0.19 5.31 4.72 -4.98 -0.02 5.29 16 10 N -0.54 -12.45 4.70 -235.90 -1.11 -13.56 16 11 C 0.06 1.27 5.61 -3.76 -0.02 1.25 16 12 C 0.07 1.31 5.41 -3.76 -0.02 1.29 16 13 N -0.55 -8.76 4.81 -238.37 -1.15 -9.91 16 14 C 0.29 3.87 5.78 -63.32 -0.37 3.50 16 15 N -0.60 -7.16 3.02 -175.92 -0.53 -7.69 16 16 C 0.12 0.97 6.70 -3.13 -0.02 0.95 16 17 C -0.10 -0.70 3.18 -88.99 -0.28 -0.98 16 18 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 19 C 0.09 0.71 3.10 -25.70 -0.08 0.63 16 20 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 21 C -0.15 -0.97 6.39 -24.48 -0.16 -1.12 16 22 C -0.16 -1.15 7.02 -24.78 -0.17 -1.33 16 23 C 0.05 0.54 7.79 37.88 0.30 0.84 16 24 O -0.35 -4.37 9.51 -35.23 -0.34 -4.71 16 25 C -0.15 -1.29 5.87 -26.74 -0.16 -1.45 16 26 C 0.53 7.13 6.52 -10.86 -0.07 7.05 16 27 O -0.54 -9.51 16.27 5.55 0.09 -9.42 16 28 C 0.06 1.03 5.53 -3.77 -0.02 1.00 16 29 C 0.07 1.45 5.43 -3.76 -0.02 1.43 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 32 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 33 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.08 1.48 5.98 -51.93 -0.31 1.16 16 37 H 0.08 0.91 7.75 -51.93 -0.40 0.50 16 38 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 39 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.49 6.38 -51.93 -0.33 0.16 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 0.92 6.31 -51.93 -0.33 0.59 16 48 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 0.94 7.98 -51.93 -0.41 0.53 16 50 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.08 1.82 6.79 -51.93 -0.35 1.47 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -34.59 397.69 -12.04 -46.63 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -9.21 Total: -2.72 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -1.51 Total: 4.99 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -2.05 Total: -57.76 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.24 Total: -14.13 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.59 -12.04 -46.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120357050.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.036 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds