Wall clock time and date at job start Sat Apr 11 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46731 * 2 1 4 4 C 1.53002 * 109.46939 * 184.67017 * 3 2 1 5 5 C 1.50693 * 115.55997 * 30.02396 * 4 3 2 6 6 O 1.21288 * 120.00225 * 269.99290 * 5 4 3 7 7 N 1.34781 * 119.99788 * 90.00195 * 5 4 3 8 8 C 1.46500 * 119.99888 * 355.09878 * 7 5 4 9 9 C 1.46502 * 119.99604 * 175.10498 * 7 5 4 10 10 C 1.52999 * 109.47446 * 94.27710 * 9 7 5 11 11 H 1.09000 * 112.95387 * 307.22764 * 10 9 7 12 12 C 1.53934 * 113.76248 * 175.58208 * 10 9 7 13 13 C 1.53940 * 86.34159 * 221.96218 * 12 10 9 14 14 N 1.47964 * 113.75831 * 78.87127 * 10 9 7 15 15 C 1.46901 * 111.00049 * 251.89941 * 14 10 9 16 16 C 1.50701 * 109.46831 * 174.60450 * 15 14 10 17 17 O 1.21288 * 120.00095 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99641 * 180.02562 * 16 15 14 19 19 C 1.37107 * 119.99631 * 180.02562 * 18 16 15 20 20 H 1.07993 * 119.99932 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99535 * 180.02562 * 19 18 16 22 22 N 1.31408 * 120.00239 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99792 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46888 * 89.99475 * 23 21 19 25 25 H 1.48495 * 109.46988 * 209.99746 * 23 21 19 26 26 H 1.48502 * 109.46709 * 329.99775 * 23 21 19 27 27 C 1.52998 * 117.49983 * 175.71717 * 4 3 2 28 28 C 1.52998 * 60.00193 * 107.48516 * 27 4 3 29 29 H 1.08998 * 109.47128 * 299.99965 * 1 2 3 30 30 H 1.09004 * 109.47034 * 60.00506 * 1 2 3 31 31 H 1.09002 * 109.46589 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47128 * 240.00035 * 2 1 3 33 33 H 1.08997 * 109.46750 * 119.99729 * 2 1 3 34 34 H 1.08997 * 109.47396 * 64.66635 * 3 2 1 35 35 H 1.08997 * 109.47228 * 304.66683 * 3 2 1 36 36 H 1.09004 * 109.46581 * 94.55838 * 8 7 5 37 37 H 1.09002 * 109.46694 * 214.55609 * 8 7 5 38 38 H 1.08989 * 109.46978 * 334.55646 * 8 7 5 39 39 H 1.09007 * 109.47004 * 214.27660 * 9 7 5 40 40 H 1.08992 * 109.47547 * 334.27080 * 9 7 5 41 41 H 1.09001 * 113.72823 * 336.32081 * 12 10 9 42 42 H 1.08998 * 113.73619 * 107.59920 * 12 10 9 43 43 H 1.08995 * 113.75956 * 138.03588 * 13 12 10 44 44 H 1.08993 * 113.75722 * 269.40217 * 13 12 10 45 45 H 1.08991 * 109.47274 * 294.60942 * 15 14 10 46 46 H 1.09004 * 109.46716 * 54.60789 * 15 14 10 47 47 H 0.96997 * 120.00537 * 0.02562 * 18 16 15 48 48 H 0.97005 * 119.99873 * 180.02562 * 22 21 19 49 49 H 1.09000 * 117.49922 * 359.97438 * 27 4 3 50 50 H 1.08994 * 117.49893 * 214.97736 * 27 4 3 51 51 H 1.09004 * 117.49781 * 107.48809 * 28 27 4 52 52 H 1.09005 * 117.50221 * 252.48511 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5655 1.4442 -0.1175 5 6 4.1603 0.2867 -0.8773 6 8 4.4691 -0.7291 -0.2909 7 7 4.3494 0.3804 -2.2085 8 6 3.8790 1.5633 -2.9336 9 6 5.0252 -0.7006 -2.9301 10 6 3.9818 -1.6645 -3.4987 11 1 3.2791 -2.0224 -2.7462 12 6 4.5807 -2.7834 -4.3699 13 6 3.3986 -2.5374 -5.3249 14 7 3.3335 -1.1787 -4.7368 15 6 1.9429 -0.7799 -4.4813 16 6 1.3582 -0.1692 -5.7288 17 8 2.0333 -0.0758 -6.7321 18 7 0.0852 0.2732 -5.7295 19 6 -0.4469 0.8284 -6.8646 20 1 0.1542 0.9115 -7.7579 21 6 -1.7593 1.2850 -6.8652 22 7 -2.4905 1.1842 -5.7780 23 14 -2.4841 2.0420 -8.4115 24 1 -3.1155 0.9789 -9.2339 25 1 -3.5071 3.0507 -8.0360 26 1 -1.4057 2.6981 -9.1937 27 6 4.2634 2.8005 -0.2360 28 6 4.3643 1.9993 1.0635 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.7465 1.9317 0.9288 35 1 1.6100 1.9799 -0.8452 36 1 4.6933 2.2823 -3.0229 37 1 3.5427 1.2698 -3.9281 38 1 3.0511 2.0175 -2.3895 39 1 5.6142 -0.2805 -3.7455 40 1 5.6824 -1.2383 -2.2469 41 1 5.5509 -2.5333 -4.7992 42 1 4.5648 -3.7647 -3.8958 43 1 3.6760 -2.5481 -6.3789 44 1 2.5239 -3.1503 -5.1078 45 1 1.3599 -1.6561 -4.1980 46 1 1.9172 -0.0494 -3.6726 47 1 -0.4546 0.1989 -4.9270 48 1 -3.4068 1.5027 -5.7785 49 1 3.6358 3.6917 -0.2307 50 1 5.1529 2.8557 -0.8635 51 1 5.3202 1.5273 1.2909 52 1 3.8033 2.3635 1.9243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691058704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:06:47 Heat of formation + Delta-G solvation = -15.308224 kcal Electronic energy + Delta-G solvation = -31353.282864 eV Core-core repulsion = 27354.686932 eV Total energy + Delta-G solvation = -3998.595932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.72335 -39.70949 -37.73267 -37.03691 -35.37699 -33.99305 -33.89515 -31.35489 -30.66629 -29.01919 -27.57938 -26.55575 -25.72616 -24.20669 -23.65828 -22.67909 -22.03340 -21.52452 -19.51516 -19.24686 -18.57935 -17.89001 -16.62728 -16.39987 -16.14349 -15.86873 -15.59474 -15.26671 -15.06485 -14.58344 -14.27907 -14.26162 -13.79826 -13.74308 -13.44585 -13.35024 -13.17428 -12.58555 -12.48035 -12.45651 -12.28506 -12.19398 -11.79462 -11.72059 -11.67798 -11.57972 -11.42616 -11.28889 -11.18665 -11.05387 -10.85192 -10.79685 -10.56550 -10.47744 -10.39701 -10.20948 -10.09681 -9.60814 -9.49888 -8.87541 -8.47846 -8.15344 -7.95758 -6.41592 -3.82284 2.58038 2.91051 3.17031 3.25722 3.31396 3.47719 3.90437 3.96512 4.22354 4.28994 4.43853 4.61417 4.64415 4.74767 4.88379 5.03877 5.05546 5.15124 5.18630 5.22414 5.28813 5.30616 5.37747 5.40794 5.47362 5.52080 5.59665 5.62000 5.64577 5.71729 5.72970 5.75948 5.77571 5.83150 5.84776 5.86257 5.87272 6.01974 6.03766 6.12751 6.18402 6.27832 6.32915 6.34227 6.50313 6.64534 7.24722 7.39874 7.54936 8.06331 8.16518 8.62366 9.18690 9.55073 10.07501 10.76160 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010431 B = 0.003729 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.554319 B = 7507.790766 C = 8959.022532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.074 4.074 4 C -0.151 4.151 5 C 0.553 3.447 6 O -0.540 6.540 7 N -0.605 5.605 8 C 0.072 3.928 9 C 0.136 3.864 10 C 0.011 3.989 11 H 0.077 0.923 12 C -0.137 4.137 13 C 0.012 3.988 14 N -0.443 5.443 15 C 0.011 3.989 16 C 0.447 3.553 17 O -0.575 6.575 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.928 3.072 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.166 4.166 28 C -0.147 4.147 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.085 0.915 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.096 0.904 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.258 -0.556 13.439 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.112 4.112 4 C -0.155 4.155 5 C 0.341 3.659 6 O -0.418 6.418 7 N -0.337 5.337 8 C -0.071 4.071 9 C 0.013 3.987 10 C -0.100 4.100 11 H 0.095 0.905 12 C -0.176 4.176 13 C -0.116 4.116 14 N -0.166 5.166 15 C -0.121 4.121 16 C 0.232 3.768 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.755 3.245 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.203 4.203 28 C -0.184 4.184 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.117 0.883 51 H 0.115 0.885 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.937 -0.381 12.723 17.450 hybrid contribution -1.487 -0.185 0.152 1.506 sum 10.450 -0.567 12.875 16.592 Atomic orbital electron populations 1.21781 0.95288 1.01922 1.02054 1.21520 0.96035 0.95936 1.02407 1.21153 0.89287 0.98067 1.02700 1.21488 0.96098 0.94427 1.03437 1.19535 0.77326 0.87412 0.81619 1.90675 1.51472 1.31006 1.68600 1.47795 1.58402 1.20610 1.06844 1.22029 0.99506 0.86853 0.98697 1.21419 0.93769 0.87664 0.95811 1.23916 0.97577 0.94967 0.93502 0.90498 1.23328 0.99453 0.97830 0.96970 1.23824 0.97103 0.89903 1.00804 1.68430 1.13637 1.22562 1.11930 1.22476 0.90912 1.00373 0.98346 1.19689 0.83045 0.84701 0.89402 1.90521 1.60320 1.60395 1.34631 1.41880 1.10486 1.53841 1.14179 1.19679 0.95848 1.35186 0.92000 0.88013 1.25229 0.96263 0.97955 0.98414 1.69610 1.09632 1.47562 1.27575 0.85892 0.78721 0.78736 0.81159 1.20471 1.20940 1.19421 1.23172 1.02617 0.93916 1.00564 1.23059 1.01502 1.01881 0.91976 0.92884 0.92095 0.92679 0.92281 0.91646 0.90875 0.90779 0.92787 0.89264 0.90812 0.89549 0.89484 0.89074 0.91123 0.88965 0.91696 0.93021 0.89725 0.77647 0.91940 0.87760 0.88340 0.88547 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.44 5.22 -26.73 -0.14 -1.58 16 3 C -0.07 -0.78 5.22 -26.73 -0.14 -0.92 16 4 C -0.15 -1.62 1.17 -155.66 -0.18 -1.81 16 5 C 0.55 7.32 4.91 -10.99 -0.05 7.27 16 6 O -0.54 -8.74 16.46 5.55 0.09 -8.65 16 7 N -0.60 -7.52 2.87 -181.57 -0.52 -8.04 16 8 C 0.07 0.86 8.53 59.85 0.51 1.37 16 9 C 0.14 1.68 5.48 -4.04 -0.02 1.66 16 10 C 0.01 0.15 3.55 -66.65 -0.24 -0.09 16 11 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 12 C -0.14 -1.60 7.86 -25.79 -0.20 -1.80 16 13 C 0.01 0.18 7.78 -2.63 -0.02 0.16 16 14 N -0.44 -7.13 4.96 -231.12 -1.15 -8.28 16 15 C 0.01 0.20 4.63 -4.97 -0.02 0.17 16 16 C 0.45 10.42 7.76 -10.99 -0.09 10.34 16 17 O -0.58 -15.45 15.90 5.55 0.09 -15.36 16 18 N -0.57 -14.19 5.29 -10.96 -0.06 -14.25 16 19 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C -0.17 -1.43 8.42 -26.73 -0.23 -1.66 16 28 C -0.15 -1.35 9.88 -26.73 -0.26 -1.61 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.81 6.93 -51.93 -0.36 0.45 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 35 H 0.07 0.78 7.32 -51.93 -0.38 0.40 16 36 H 0.05 0.55 7.80 -51.93 -0.40 0.15 16 37 H 0.09 1.30 6.29 -51.93 -0.33 0.98 16 38 H 0.07 0.83 5.48 -51.93 -0.28 0.55 16 39 H 0.09 1.02 8.10 -51.92 -0.42 0.60 16 40 H 0.09 1.07 7.37 -51.93 -0.38 0.68 16 41 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 44 H 0.06 0.94 7.54 -51.93 -0.39 0.55 16 45 H 0.05 0.88 7.48 -51.93 -0.39 0.49 16 46 H 0.08 1.42 6.72 -51.93 -0.35 1.07 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 49 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.10 0.85 7.62 -51.93 -0.40 0.45 16 51 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 LS Contribution 413.97 15.07 6.24 6.24 Total: -1.00 -31.84 413.97 -9.52 -41.36 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -8.96 Total: 12.34 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.96 Total: 2.30 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -1.00 Total: -54.09 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.18 Total: -24.01 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.84 -9.52 -41.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691058704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.054 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds