Wall clock time and date at job start Sat Apr 11 2020 05:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46984 * 2 1 4 4 C 1.52997 * 109.46871 * 185.09826 * 3 2 1 5 5 C 1.50698 * 115.55413 * 294.80056 * 4 3 2 6 6 O 1.21282 * 120.00276 * 99.34691 * 5 4 3 7 7 N 1.34782 * 120.00146 * 279.35342 * 5 4 3 8 8 C 1.46501 * 120.00357 * 175.09272 * 7 5 4 9 9 C 1.52994 * 109.47243 * 184.87178 * 8 7 5 10 10 H 1.09000 * 110.46010 * 56.66373 * 9 8 7 11 11 C 1.54376 * 110.41429 * 294.25310 * 9 8 7 12 12 C 1.54253 * 105.06202 * 217.36843 * 11 9 8 13 13 C 1.54379 * 105.05990 * 359.97438 * 12 11 9 14 14 N 1.48556 * 110.41269 * 179.07703 * 9 8 7 15 15 C 1.46900 * 111.00332 * 277.81931 * 14 9 8 16 16 C 1.50693 * 109.47450 * 168.64889 * 15 14 9 17 17 O 1.21300 * 120.00166 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00312 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00002 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00509 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00173 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99495 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00344 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47169 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47185 * 119.99953 * 23 21 19 26 26 H 1.48501 * 109.47155 * 240.00132 * 23 21 19 27 27 C 1.53001 * 117.51831 * 80.50302 * 4 3 2 28 28 C 1.52996 * 60.00023 * 107.47757 * 27 4 3 29 29 H 1.08995 * 109.47221 * 300.00067 * 1 2 3 30 30 H 1.08998 * 109.46990 * 59.99906 * 1 2 3 31 31 H 1.08993 * 109.46831 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47221 * 239.99933 * 2 1 3 33 33 H 1.09000 * 109.46631 * 119.99691 * 2 1 3 34 34 H 1.09007 * 109.47038 * 65.10335 * 3 2 1 35 35 H 1.08994 * 109.47088 * 305.09886 * 3 2 1 36 36 H 0.97003 * 119.99457 * 355.08837 * 7 5 4 37 37 H 1.09003 * 109.46586 * 64.87048 * 8 7 5 38 38 H 1.08998 * 109.46682 * 304.87850 * 8 7 5 39 39 H 1.09006 * 110.32894 * 98.46739 * 11 9 8 40 40 H 1.09000 * 110.32452 * 336.26654 * 11 9 8 41 41 H 1.08996 * 110.32674 * 118.89413 * 12 11 9 42 42 H 1.09002 * 110.32375 * 241.10125 * 12 11 9 43 43 H 1.09006 * 110.41070 * 142.63132 * 13 12 11 44 44 H 1.08999 * 110.41308 * 264.95368 * 13 12 11 45 45 H 1.08999 * 109.47434 * 288.65529 * 15 14 9 46 46 H 1.09003 * 109.46826 * 48.65229 * 15 14 9 47 47 H 0.96996 * 119.99903 * 0.02562 * 18 16 15 48 48 H 0.97001 * 120.00087 * 179.97438 * 22 21 19 49 49 H 1.08997 * 117.50003 * 214.96776 * 27 4 3 50 50 H 1.09002 * 117.49747 * 359.97438 * 27 4 3 51 51 H 1.09005 * 117.50500 * 252.51009 * 28 27 4 52 52 H 1.09003 * 117.49879 * 107.49117 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5646 1.4445 -0.1282 5 6 4.3151 0.8387 1.0298 6 8 4.7273 -0.2996 0.9564 7 7 4.5281 1.5617 2.1471 8 6 5.1620 0.9400 3.3123 9 6 5.1758 1.9331 4.4760 10 1 4.1640 2.2706 4.7009 11 6 6.0839 3.1371 4.1457 12 6 6.7781 3.4926 5.4765 13 6 6.2305 2.4740 6.4992 14 7 5.7949 1.3156 5.6769 15 6 4.8224 0.4897 6.4049 16 6 5.5401 -0.3345 7.4424 17 8 6.7435 -0.2426 7.5639 18 7 4.8450 -1.1738 8.2354 19 6 5.4980 -1.9232 9.1796 20 1 6.5694 -1.8407 9.2884 21 6 4.7813 -2.7881 9.9976 22 7 3.4777 -2.8881 9.8657 23 14 5.6708 -3.8086 11.2846 24 1 7.1253 -3.5140 11.2314 25 1 5.1469 -3.4714 12.6326 26 1 5.4473 -5.2515 11.0134 27 6 4.1566 1.2612 -1.5271 28 6 4.2116 2.6303 -0.8465 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.7532 1.9294 0.9322 35 1 1.6040 1.9821 -0.8408 36 1 4.2617 2.4939 2.1796 37 1 6.1850 0.6587 3.0624 38 1 4.6008 0.0509 3.5999 39 1 5.4854 3.9777 3.7944 40 1 6.8238 2.8585 3.3953 41 1 7.8587 3.3885 5.3795 42 1 6.5203 4.5077 5.7786 43 1 7.0151 2.1732 7.1935 44 1 5.3853 2.8971 7.0420 45 1 4.0923 1.1343 6.8943 46 1 4.3116 -0.1718 5.7051 47 1 3.8828 -1.2476 8.1381 48 1 2.9773 -3.4921 10.4364 49 1 5.0888 0.7025 -1.6098 50 1 3.4599 1.1388 -2.3563 51 1 3.5511 3.4090 -1.2280 52 1 5.1801 2.9724 -0.4815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691097869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:06:53 Heat of formation + Delta-G solvation = -57.843538 kcal Electronic energy + Delta-G solvation = -29609.834282 eV Core-core repulsion = 25609.393880 eV Total energy + Delta-G solvation = -4000.440402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.45365 -39.31734 -37.71255 -37.18593 -34.76583 -34.10406 -33.87005 -32.03324 -31.10609 -30.03636 -27.85505 -26.75290 -25.54040 -24.18141 -22.98419 -22.93057 -21.68695 -21.12566 -20.30567 -19.52302 -19.13228 -17.85026 -17.19735 -16.32438 -15.96063 -15.87401 -15.60951 -15.42989 -14.87769 -14.64404 -14.46539 -14.39111 -14.11142 -13.78275 -13.66459 -13.54548 -13.09856 -13.05504 -12.64219 -12.51719 -12.26262 -12.06649 -12.00590 -11.91421 -11.79681 -11.56477 -11.46099 -11.18582 -11.14108 -11.01928 -10.92903 -10.88590 -10.70567 -10.48723 -10.31915 -10.30925 -10.19389 -9.82232 -9.47374 -9.14514 -8.54292 -8.03733 -7.92190 -6.38632 -3.79120 2.48890 2.87921 3.18579 3.28866 3.30323 3.36350 3.93233 4.02572 4.19429 4.26477 4.40152 4.48181 4.54057 4.59829 4.68876 4.86555 4.91909 4.93113 5.06831 5.12879 5.20507 5.23604 5.24991 5.28318 5.37516 5.43730 5.45570 5.51781 5.55545 5.58511 5.63671 5.69989 5.74908 5.76747 5.84734 5.85576 5.87856 5.95617 6.00143 6.03762 6.09842 6.19468 6.28055 6.33617 6.38981 7.06902 7.17951 7.37144 7.58472 8.09604 8.11881 8.65303 9.21739 9.57986 10.10075 10.79397 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.002476 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.276109 B =11305.273252 C =12910.203457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.072 4.072 4 C -0.156 4.156 5 C 0.549 3.451 6 O -0.529 6.529 7 N -0.723 5.723 8 C 0.133 3.867 9 C 0.048 3.952 10 H 0.056 0.944 11 C -0.119 4.119 12 C -0.123 4.123 13 C 0.039 3.961 14 N -0.474 5.474 15 C 0.032 3.968 16 C 0.447 3.553 17 O -0.575 6.575 18 N -0.566 5.566 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.144 4.144 28 C -0.165 4.165 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.399 0.601 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.039 0.961 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.101 0.899 50 H 0.103 0.897 51 H 0.103 0.897 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 15.627 -20.715 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.110 4.110 4 C -0.159 4.159 5 C 0.334 3.666 6 O -0.405 6.405 7 N -0.375 5.375 8 C 0.009 3.991 9 C -0.061 4.061 10 H 0.074 0.926 11 C -0.157 4.157 12 C -0.161 4.161 13 C -0.088 4.088 14 N -0.199 5.199 15 C -0.099 4.099 16 C 0.232 3.768 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.182 4.182 28 C -0.202 4.202 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.121 0.879 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.006 14.349 -20.668 25.477 hybrid contribution -1.208 0.274 0.987 1.584 sum -5.214 14.622 -19.680 25.066 Atomic orbital electron populations 1.21770 0.95669 1.01887 1.01580 1.21495 0.95601 0.96127 1.02989 1.21088 0.89356 0.97895 1.02633 1.21501 0.96125 1.04761 0.93500 1.19471 0.78883 0.85674 0.82556 1.90741 1.50116 1.18303 1.81321 1.45904 1.62731 1.14858 1.14037 1.21247 0.99084 0.95426 0.83327 1.22830 0.97216 0.93917 0.92179 0.92646 1.22354 0.98582 0.96340 0.98388 1.22290 1.01040 0.98308 0.94462 1.23141 1.00375 0.89462 0.95852 1.64943 1.33455 1.17052 1.04421 1.22111 0.93713 0.97154 0.96971 1.19648 0.88176 0.84344 0.84636 1.90517 1.14197 1.69305 1.71852 1.41861 1.09915 1.36880 1.31699 1.19738 0.94378 1.17863 1.10591 0.87890 1.25253 0.95560 0.98207 0.99014 1.69621 1.05903 1.38547 1.40377 0.85810 0.79602 0.79181 0.79816 1.19230 1.20821 1.20751 1.22970 1.03036 0.98847 0.93331 1.23140 1.02380 0.91635 1.03095 0.92731 0.92878 0.92559 0.91594 0.91708 0.91189 0.90884 0.76745 0.90380 0.91056 0.91581 0.90774 0.90890 0.91610 0.88493 0.94282 0.93047 0.89408 0.77571 0.91980 0.88087 0.87894 0.87865 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.10 5.74 -26.73 -0.15 -1.25 16 3 C -0.07 -0.52 5.09 -26.73 -0.14 -0.66 16 4 C -0.16 -1.32 1.87 -155.66 -0.29 -1.61 16 5 C 0.55 6.56 6.47 -10.98 -0.07 6.49 16 6 O -0.53 -8.78 17.01 5.56 0.09 -8.69 16 7 N -0.72 -7.35 5.40 -60.29 -0.33 -7.68 16 8 C 0.13 1.71 5.23 -4.04 -0.02 1.69 16 9 C 0.05 0.58 2.37 -66.08 -0.16 0.42 16 10 H 0.06 0.61 8.00 -51.93 -0.42 0.20 16 11 C -0.12 -1.18 6.12 -25.35 -0.16 -1.33 16 12 C -0.12 -1.39 7.00 -25.35 -0.18 -1.56 16 13 C 0.04 0.59 5.95 -2.17 -0.01 0.58 16 14 N -0.47 -7.76 4.64 -223.56 -1.04 -8.80 16 15 C 0.03 0.58 5.27 -4.98 -0.03 0.56 16 16 C 0.45 10.70 7.64 -10.99 -0.08 10.62 16 17 O -0.58 -15.75 14.91 5.54 0.08 -15.67 16 18 N -0.57 -14.59 5.29 -10.96 -0.06 -14.64 16 19 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 20 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 23 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.14 -1.11 9.88 -26.73 -0.26 -1.38 16 28 C -0.17 -1.02 9.92 -26.73 -0.27 -1.29 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.72 7.87 -51.93 -0.41 0.32 16 34 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 36 H 0.40 2.91 8.23 -40.82 -0.34 2.58 16 37 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 38 H 0.07 1.06 7.25 -51.93 -0.38 0.69 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 1.75 7.33 -51.93 -0.38 1.37 16 44 H 0.04 0.56 7.74 -51.93 -0.40 0.16 16 45 H 0.05 0.84 7.74 -51.93 -0.40 0.43 16 46 H 0.09 1.48 7.12 -51.93 -0.37 1.11 16 47 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 421.13 15.07 6.35 6.35 Total: -1.00 -33.74 421.13 -10.12 -43.86 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -9.24 Total: 10.62 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.69 Total: 2.48 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.70 Total: -55.30 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: 0.18 Total: -24.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.74 -10.12 -43.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691097869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.984 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds