Wall clock time and date at job start Sat Apr 11 2020 05:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30178 * 126.80100 * 2 1 4 4 O 1.20919 * 111.60387 * 179.97438 * 3 2 1 5 5 C 1.34045 * 111.56924 * 359.75878 * 4 3 2 6 6 C 1.50696 * 126.78069 * 180.28518 * 5 4 3 7 7 C 1.35454 * 106.44428 * 0.38181 * 5 4 3 8 8 C 1.50696 * 128.00610 * 179.91124 * 7 5 4 9 9 H 1.09000 * 109.47528 * 5.47428 * 8 7 5 10 10 C 1.53006 * 109.46969 * 245.47226 * 8 7 5 11 11 C 1.53001 * 109.47090 * 125.47580 * 8 7 5 12 12 C 1.50695 * 109.47294 * 184.99935 * 11 8 7 13 13 O 1.21280 * 119.99956 * 359.97438 * 12 11 8 14 14 N 1.34782 * 120.00288 * 179.97438 * 12 11 8 15 15 C 1.46501 * 119.99961 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46966 * 180.02562 * 15 14 12 17 17 H 1.08997 * 109.47592 * 64.99374 * 16 15 14 18 18 N 1.46502 * 109.46683 * 304.99979 * 16 15 14 19 19 C 1.36936 * 119.99976 * 154.72872 * 18 16 15 20 20 H 1.08003 * 120.00340 * 0.27125 * 19 18 16 21 21 C 1.38819 * 120.00259 * 180.27345 * 19 18 16 22 22 N 1.31615 * 119.99552 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46794 * 60.00296 * 23 21 19 25 25 H 1.48501 * 109.46820 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47120 * 300.00075 * 23 21 19 27 27 C 1.52991 * 109.47296 * 184.99966 * 16 15 14 28 28 C 1.53003 * 109.47249 * 64.99599 * 27 16 15 29 29 C 1.53002 * 109.47222 * 184.99492 * 27 16 15 30 30 H 1.09007 * 109.47142 * 274.90297 * 1 2 3 31 31 H 1.09001 * 109.47438 * 34.89958 * 1 2 3 32 32 H 1.09001 * 109.47347 * 154.90401 * 1 2 3 33 33 H 1.08998 * 109.47859 * 265.01488 * 6 5 4 34 34 H 1.09006 * 109.47210 * 25.02284 * 6 5 4 35 35 H 1.09002 * 109.47086 * 145.01365 * 6 5 4 36 36 H 1.08998 * 109.47055 * 54.22494 * 10 8 7 37 37 H 1.09003 * 109.46769 * 174.22705 * 10 8 7 38 38 H 1.09001 * 109.46890 * 294.21907 * 10 8 7 39 39 H 1.08992 * 109.47269 * 64.99862 * 11 8 7 40 40 H 1.09010 * 109.46787 * 304.99772 * 11 8 7 41 41 H 0.96998 * 119.99300 * 0.02562 * 14 12 11 42 42 H 1.08992 * 109.47227 * 60.00190 * 15 14 12 43 43 H 1.09000 * 109.46757 * 299.99532 * 15 14 12 44 44 H 0.97001 * 120.00392 * 334.99825 * 18 16 15 45 45 H 0.97004 * 119.99793 * 179.97438 * 22 21 19 46 46 H 1.08997 * 109.47466 * 304.99937 * 27 16 15 47 47 H 1.09008 * 109.47201 * 60.00216 * 28 27 16 48 48 H 1.08999 * 109.47544 * 180.02562 * 28 27 16 49 49 H 1.08997 * 109.47322 * 300.00054 * 28 27 16 50 50 H 1.08995 * 109.47477 * 300.00071 * 29 27 16 51 51 H 1.09000 * 109.46656 * 60.00548 * 29 27 16 52 52 H 1.09001 * 109.46853 * 179.97438 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6068 0.0062 6 6 4.9021 -1.3695 0.0145 7 6 2.3539 -1.1321 0.0007 8 6 1.9591 -2.5864 0.0018 9 1 2.8505 -3.2049 0.1059 10 6 1.2545 -2.9245 -1.3136 11 6 1.0113 -2.8567 1.1721 12 6 0.7137 -4.3321 1.2471 13 8 1.2103 -5.0925 0.4433 14 7 -0.1043 -4.8066 2.2074 15 6 -0.3932 -6.2410 2.2806 16 6 -1.3410 -6.5113 3.4508 17 1 -2.3014 -6.0331 3.2585 18 7 -0.7632 -5.9681 4.6826 19 6 -1.5793 -5.6141 5.7236 20 1 -2.6486 -5.7393 5.6383 21 6 -1.0322 -5.0941 6.8887 22 7 0.2709 -4.9418 6.9929 23 14 -2.1457 -4.6104 8.3085 24 1 -2.9057 -5.8002 8.7690 25 1 -1.3218 -4.0865 9.4274 26 1 -3.0945 -3.5608 7.8581 27 6 -1.5441 -8.0198 3.6047 28 6 -0.2186 -8.6754 3.9976 29 6 -2.5867 -8.2858 4.6925 30 1 -0.3634 0.0878 1.0240 31 1 -0.3634 0.8428 -0.5880 32 1 -0.3634 -0.9306 -0.4359 33 1 5.1746 -1.6344 -1.0071 34 1 5.6850 -0.7486 0.4502 35 1 4.7868 -2.2773 0.6067 36 1 1.8901 -2.6362 -2.1508 37 1 1.0605 -3.9962 -1.3568 38 1 0.3108 -2.3819 -1.3702 39 1 0.0828 -2.3059 1.0224 40 1 1.4801 -2.5329 2.1015 41 1 -0.5018 -4.1984 2.8500 42 1 0.5356 -6.7915 2.4302 43 1 -0.8621 -6.5650 1.3514 44 1 0.1972 -5.8556 4.7594 45 1 0.6532 -4.5781 7.8069 46 1 -1.8902 -8.4382 2.6596 47 1 0.1276 -8.2572 4.9428 48 1 -0.3631 -9.7503 4.1068 49 1 0.5242 -8.4860 3.2227 50 1 -2.2406 -7.8675 5.6376 51 1 -3.5309 -7.8188 4.4125 52 1 -2.7316 -9.3606 4.8018 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698965487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:31 Heat of formation + Delta-G solvation = 5.771630 kcal Electronic energy + Delta-G solvation = -30207.175896 eV Core-core repulsion = 26209.494055 eV Total energy + Delta-G solvation = -3997.681841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.00615 -39.67540 -37.53180 -36.46492 -33.97031 -33.78950 -32.94122 -32.52484 -30.29417 -28.97646 -28.72694 -27.73461 -27.10209 -26.32895 -24.13857 -23.50782 -22.12106 -20.82130 -20.23160 -19.91867 -18.73891 -17.73675 -17.38431 -16.92916 -16.61057 -15.77640 -15.48402 -14.87778 -14.73421 -14.42491 -14.25527 -13.69780 -13.64223 -13.57103 -13.44468 -13.33899 -13.12247 -13.09135 -12.95207 -12.83655 -12.61123 -12.37019 -12.18613 -11.97061 -11.54562 -11.35183 -11.32793 -11.30356 -11.01085 -10.96531 -10.83757 -10.62405 -10.55175 -10.30717 -10.18053 -9.93721 -9.90478 -9.52774 -9.45792 -9.19552 -8.95534 -8.59914 -7.05839 -5.85207 -3.13917 1.36600 2.10676 2.93380 3.00639 3.37039 3.42758 3.44025 3.55969 4.08973 4.34089 4.51153 4.56918 4.74783 4.97028 5.02466 5.14392 5.19337 5.21085 5.31430 5.33903 5.39625 5.41495 5.43285 5.50636 5.53347 5.56063 5.63573 5.71248 5.77964 5.82601 5.83565 5.87768 5.93878 6.00526 6.10109 6.20098 6.21169 6.31652 6.33986 6.41963 6.53246 6.62753 6.69239 6.80170 6.94504 7.05246 7.27373 7.62887 7.93129 8.20061 8.32250 8.56760 9.44506 9.99320 10.35459 11.36451 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.002880 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.728401 B = 9720.150871 C =11021.568558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.027 3.973 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.032 4.032 6 C -0.075 4.075 7 C -0.191 4.191 8 C 0.007 3.993 9 H 0.091 0.909 10 C -0.149 4.149 11 C -0.139 4.139 12 C 0.512 3.488 13 O -0.554 6.554 14 N -0.712 5.712 15 C 0.112 3.888 16 C 0.168 3.832 17 H 0.052 0.948 18 N -0.717 5.717 19 C -0.238 4.238 20 H 0.072 0.928 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 0.901 3.099 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.107 4.107 28 C -0.140 4.140 29 C -0.142 4.142 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.410 0.590 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.036 0.964 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.039 0.961 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 4.368 -15.143 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 N -0.076 5.076 4 O 0.029 5.971 5 C -0.095 4.095 6 C -0.132 4.132 7 C -0.194 4.194 8 C -0.012 4.012 9 H 0.109 0.891 10 C -0.206 4.206 11 C -0.179 4.179 12 C 0.298 3.702 13 O -0.433 6.433 14 N -0.363 5.363 15 C -0.012 4.012 16 C 0.057 3.943 17 H 0.070 0.930 18 N -0.359 5.359 19 C -0.369 4.369 20 H 0.090 0.910 21 C -0.205 4.205 22 N -0.577 5.577 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.129 4.129 28 C -0.198 4.198 29 C -0.199 4.199 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.246 0.754 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.220 0.780 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.104 0.896 51 H 0.058 0.942 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.446 5.199 -15.566 16.769 hybrid contribution -0.596 -0.150 1.363 1.495 sum 2.850 5.049 -14.204 15.341 Atomic orbital electron populations 1.20332 0.86192 1.03797 1.03663 1.23393 0.98826 0.88428 1.02498 1.73817 0.89322 1.24011 1.20497 1.84787 1.21639 1.22564 1.68088 1.24250 0.98263 0.83737 1.03248 1.20357 0.89998 0.98769 1.04073 1.21006 0.91534 0.97413 1.09493 1.19143 0.99175 0.87778 0.95109 0.89085 1.21964 0.99591 1.03716 0.95289 1.21778 1.01578 0.93941 1.00561 1.20459 0.78570 0.90349 0.80790 1.90623 1.52081 1.59485 1.41115 1.46021 1.48227 1.09888 1.32155 1.21717 1.00099 0.80762 0.98619 1.20542 0.95001 0.92359 0.86383 0.92972 1.42406 1.06786 1.75066 1.11649 1.19149 0.90347 1.34350 0.93016 0.91034 1.24701 0.95608 1.02050 0.98187 1.69642 1.09262 1.50997 1.27813 0.86364 0.79576 0.78326 0.82478 1.21309 1.21826 1.21351 1.21610 0.95974 0.97794 0.97500 1.21769 0.96868 0.98629 1.02491 1.21839 0.97542 0.99004 1.01518 0.89868 0.90624 0.89682 0.89438 0.89888 0.88806 0.93034 0.89714 0.93050 0.88829 0.88632 0.75373 0.91507 0.92101 0.78043 0.93462 0.93309 0.90991 0.94447 0.93809 0.89591 0.94184 0.94867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.17 36.00 0.33 -0.45 16 2 C 0.03 0.33 7.23 -82.10 -0.59 -0.26 16 3 N -0.37 -5.04 12.07 33.42 0.40 -4.64 16 4 O 0.09 1.18 11.20 17.16 0.19 1.37 16 5 C -0.03 -0.34 7.49 -35.30 -0.26 -0.61 16 6 C -0.07 -0.53 10.12 36.00 0.36 -0.17 16 7 C -0.19 -2.17 4.95 -104.42 -0.52 -2.69 16 8 C 0.01 0.08 2.30 -91.77 -0.21 -0.13 16 9 H 0.09 1.06 7.04 -51.93 -0.37 0.69 16 10 C -0.15 -1.62 8.81 37.16 0.33 -1.29 16 11 C -0.14 -1.64 4.94 -27.88 -0.14 -1.78 16 12 C 0.51 7.53 7.57 -10.99 -0.08 7.44 16 13 O -0.55 -9.41 13.97 5.56 0.08 -9.33 16 14 N -0.71 -10.89 5.39 -60.30 -0.32 -11.21 16 15 C 0.11 1.80 5.10 -4.04 -0.02 1.78 16 16 C 0.17 2.92 2.28 -67.93 -0.16 2.77 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 N -0.72 -15.35 3.52 -53.43 -0.19 -15.54 16 19 C -0.24 -5.77 7.76 -15.06 -0.12 -5.89 16 20 H 0.07 1.71 7.33 -52.48 -0.38 1.33 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -25.89 13.06 55.49 0.72 -25.16 16 23 Si 0.90 21.02 29.55 -169.99 -5.02 16.00 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.11 -1.76 2.74 -90.62 -0.25 -2.01 16 28 C -0.14 -2.34 8.74 37.16 0.32 -2.02 16 29 C -0.14 -2.44 8.46 37.16 0.31 -2.13 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.71 5.19 -51.93 -0.27 0.44 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.65 7.53 -51.93 -0.39 0.26 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.07 6.08 -51.93 -0.32 0.76 16 38 H 0.05 0.51 6.10 -51.93 -0.32 0.19 16 39 H 0.09 0.96 6.07 -51.93 -0.32 0.65 16 40 H 0.10 1.16 8.14 -51.92 -0.42 0.73 16 41 H 0.41 6.41 8.14 -40.82 -0.33 6.08 16 42 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.39 9.11 7.80 -40.82 -0.32 8.79 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.42 7.47 -51.92 -0.39 1.03 16 48 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.04 0.69 6.46 -51.93 -0.34 0.35 16 50 H 0.09 1.76 6.01 -51.93 -0.31 1.44 16 51 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -29.00 406.79 -7.37 -36.37 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -8.58 Total: 13.77 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -0.78 Total: -7.76 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.61 Total: -56.56 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.27 Total: -7.96 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.00 -7.37 -36.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698965487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.142 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds