Wall clock time and date at job start Sat Apr 11 2020 05:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47272 * 2 1 4 4 C 1.50705 * 110.43201 * 296.00008 * 3 2 1 5 5 O 1.21282 * 119.99821 * 249.67869 * 4 3 2 6 6 N 1.34782 * 120.00124 * 69.68435 * 4 3 2 7 7 C 1.46495 * 119.99949 * 185.22111 * 6 4 3 8 8 H 1.09002 * 109.47064 * 13.49575 * 7 6 4 9 9 C 1.53005 * 109.47002 * 133.49259 * 7 6 4 10 10 N 1.46494 * 109.47193 * 305.00591 * 9 7 6 11 11 C 1.36943 * 119.99733 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00060 * 359.97438 * 11 10 9 13 13 C 1.38814 * 119.99719 * 179.97438 * 11 10 9 14 14 N 1.31620 * 120.00315 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99857 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47234 * 180.02562 * 15 13 11 17 17 H 1.48505 * 109.46973 * 300.00055 * 15 13 11 18 18 H 1.48496 * 109.47166 * 60.00068 * 15 13 11 19 19 C 1.53000 * 109.47146 * 253.49434 * 7 6 4 20 20 C 1.54268 * 110.02896 * 179.42585 * 19 7 6 21 21 C 1.54889 * 104.19576 * 217.10569 * 20 19 7 22 22 C 1.54888 * 102.74753 * 37.94191 * 21 20 19 23 23 C 1.53877 * 110.03130 * 62.26268 * 19 7 6 24 24 C 1.54620 * 110.60260 * 173.38370 * 3 2 1 25 25 C 1.54482 * 101.76297 * 266.06368 * 24 3 2 26 26 N 1.46754 * 105.47511 * 334.58073 * 25 24 3 27 27 C 1.34420 * 111.30010 * 17.01612 * 26 25 24 28 28 O 1.21287 * 124.94311 * 179.55803 * 27 26 25 29 29 H 1.09002 * 109.47365 * 63.75859 * 1 2 3 30 30 H 1.09005 * 109.47328 * 183.75860 * 1 2 3 31 31 H 1.08998 * 109.47386 * 303.75667 * 1 2 3 32 32 H 1.09002 * 109.46881 * 239.99591 * 2 1 3 33 33 H 1.09002 * 109.46652 * 119.99961 * 2 1 3 34 34 H 0.97001 * 119.99578 * 5.22291 * 6 4 3 35 35 H 1.08993 * 109.47379 * 184.99955 * 9 7 6 36 36 H 1.09004 * 109.46431 * 65.00307 * 9 7 6 37 37 H 0.97004 * 120.00270 * 359.97438 * 10 9 7 38 38 H 0.97007 * 119.99529 * 359.97438 * 14 13 11 39 39 H 1.08994 * 110.01802 * 300.86769 * 19 7 6 40 40 H 1.08998 * 110.48830 * 335.78253 * 20 19 7 41 41 H 1.09001 * 110.48720 * 98.42976 * 20 19 7 42 42 H 1.09004 * 110.75582 * 279.63226 * 21 20 19 43 43 H 1.08996 * 110.91911 * 156.33123 * 21 20 19 44 44 H 1.09005 * 110.48898 * 203.37887 * 22 21 20 45 45 H 1.09004 * 110.59965 * 80.79315 * 22 21 20 46 46 H 1.09000 * 110.02567 * 238.57081 * 23 19 7 47 47 H 1.09002 * 110.03033 * 359.94505 * 23 19 7 48 48 H 1.09003 * 110.97043 * 24.17603 * 24 3 2 49 49 H 1.09000 * 110.97425 * 147.94204 * 24 3 2 50 50 H 1.09007 * 110.24270 * 215.58044 * 25 24 3 51 51 H 1.08999 * 110.32313 * 93.62108 * 25 24 3 52 52 H 0.97003 * 124.35623 * 197.04169 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6317 2.1448 -1.2693 5 8 2.4687 2.4360 -2.0974 6 7 0.3365 2.4495 -1.4842 7 6 -0.0771 3.0280 -2.7650 8 1 0.7290 2.9182 -3.4905 9 6 -1.3237 2.3014 -3.2740 10 7 -1.0567 0.8626 -3.3418 11 6 -2.0334 0.0045 -3.7720 12 1 -3.0006 0.3885 -4.0609 13 6 -1.7802 -1.3588 -3.8368 14 7 -0.6017 -1.8268 -3.4843 15 14 -3.1123 -2.5292 -4.4243 16 1 -2.5943 -3.9207 -4.4007 17 1 -4.2925 -2.4256 -3.5289 18 1 -3.5093 -2.1718 -5.8099 19 6 -0.3939 4.5128 -2.5754 20 6 -0.8174 5.1386 -3.9204 21 6 -0.2016 6.5595 -3.8888 22 6 1.1657 6.3241 -3.2001 23 6 0.8670 5.2665 -2.1175 24 6 3.5768 1.4761 0.1668 25 6 3.7241 1.6447 1.6953 26 7 2.4838 2.2914 2.1392 27 6 1.5192 2.1882 1.2088 28 8 0.3947 2.6283 1.3222 29 1 -0.3634 0.4544 -0.9218 30 1 -0.3634 -1.0255 0.0674 31 1 -0.3634 0.5710 0.8544 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 -0.3217 2.2858 -0.7908 35 1 -1.5795 2.6707 -4.2670 36 1 -2.1547 2.4850 -2.5928 37 1 -0.1881 0.5176 -3.0820 38 1 0.0902 -1.2190 -3.1795 39 1 -1.1890 4.6336 -1.8397 40 1 -0.4105 4.5649 -4.7530 41 1 -1.9038 5.1952 -3.9896 42 1 -0.8201 7.2356 -3.2985 43 1 -0.0640 6.9465 -4.8984 44 1 1.5266 7.2459 -2.7437 45 1 1.8946 5.9427 -3.9152 46 1 0.6835 5.7538 -1.1600 47 1 1.7044 4.5743 -2.0295 48 1 4.0261 0.5410 -0.1676 49 1 4.0082 2.3256 -0.3627 50 1 4.5821 2.2770 1.9241 51 1 3.8347 0.6719 2.1745 52 1 2.3742 2.7366 2.9941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699795395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:42 Heat of formation + Delta-G solvation = -98.229575 kcal Electronic energy + Delta-G solvation = -32484.419280 eV Core-core repulsion = 28482.227608 eV Total energy + Delta-G solvation = -4002.191672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53250 -40.61741 -39.08313 -37.60684 -37.13160 -35.62333 -35.07031 -32.84360 -31.14348 -30.94767 -29.60715 -28.54643 -27.53396 -25.27065 -24.10350 -23.93585 -22.75842 -22.30210 -21.51798 -21.13341 -20.30544 -19.31885 -18.56089 -17.97651 -17.36423 -17.30913 -16.87915 -16.56177 -16.14612 -15.68691 -15.64385 -15.41848 -15.26776 -15.02816 -14.90121 -14.59904 -14.39283 -14.25523 -14.08276 -13.94917 -13.69573 -13.22143 -12.99921 -12.85156 -12.68747 -12.60447 -12.47825 -12.32814 -12.14046 -11.98692 -11.92921 -11.92526 -11.83216 -11.81076 -11.53554 -11.47896 -11.24140 -11.05783 -10.92272 -10.70607 -10.12796 -9.94605 -9.07159 -8.34007 -5.27960 1.23685 1.51384 1.58602 1.68276 1.84508 2.09777 2.40370 2.71684 3.10567 3.28933 3.43982 3.47377 3.58941 3.66491 3.72667 3.82816 3.92826 3.98627 4.07625 4.23442 4.27361 4.33806 4.35980 4.47352 4.51327 4.61941 4.63813 4.65411 4.73886 4.74784 4.79344 4.83382 4.91471 4.95811 4.96882 5.04024 5.05668 5.07623 5.09238 5.20432 5.25814 5.37676 5.40049 5.44716 5.53691 5.62107 5.70007 5.89567 6.47352 6.53574 7.07730 7.11991 7.16556 8.01522 8.14692 9.16221 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008302 B = 0.005490 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.866585 B = 5098.803411 C = 7653.283148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.116 4.116 4 C 0.530 3.470 5 O -0.568 6.568 6 N -0.697 5.697 7 C 0.147 3.853 8 H 0.071 0.929 9 C 0.150 3.850 10 N -0.746 5.746 11 C -0.335 4.335 12 H 0.063 0.937 13 C -0.097 4.097 14 N -0.965 5.965 15 Si 1.126 2.874 16 H -0.293 1.293 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.091 4.091 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.115 4.115 25 C 0.104 3.896 26 N -0.711 5.711 27 C 0.529 3.471 28 O -0.553 6.553 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.409 0.591 35 H 0.037 0.963 36 H 0.023 0.977 37 H 0.360 0.640 38 H 0.242 0.758 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.111 0.889 49 H 0.085 0.915 50 H 0.115 0.885 51 H 0.103 0.897 52 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 12.984 11.592 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.124 4.124 3 C -0.123 4.123 4 C 0.316 3.684 5 O -0.447 6.447 6 N -0.348 5.348 7 C 0.041 3.959 8 H 0.089 0.911 9 C 0.023 3.977 10 N -0.391 5.391 11 C -0.466 4.466 12 H 0.082 0.918 13 C -0.289 4.289 14 N -0.612 5.612 15 Si 0.952 3.048 16 H -0.219 1.219 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.111 4.111 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.019 4.019 26 N -0.366 5.366 27 C 0.313 3.687 28 O -0.431 6.431 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.248 0.752 35 H 0.055 0.945 36 H 0.041 0.959 37 H 0.193 0.807 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.129 0.871 49 H 0.104 0.896 50 H 0.133 0.867 51 H 0.121 0.879 52 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 8.525 11.873 10.608 18.061 hybrid contribution 0.093 1.248 0.782 1.476 sum 8.619 13.121 11.390 19.395 Atomic orbital electron populations 1.22080 0.96013 1.01996 1.02798 1.21300 0.95863 0.91026 1.04230 1.21774 1.00820 0.97700 0.92014 1.20227 0.82521 0.77771 0.87885 1.90634 1.51219 1.55368 1.47525 1.46215 1.09001 1.62263 1.17329 1.21313 0.96365 0.92856 0.85327 0.91057 1.21056 0.94913 0.83724 0.98012 1.42440 1.13865 1.02205 1.80628 1.20317 0.94828 0.91378 1.40121 0.91850 1.27053 1.03108 0.97320 1.01418 1.70980 1.04512 1.36631 1.49106 0.82638 0.72177 0.73903 0.76111 1.21861 1.20663 1.20784 1.22053 0.98257 0.92030 0.98777 1.22406 1.01049 0.96577 0.95472 1.22461 0.95699 0.95806 1.01212 1.22323 0.97777 0.98308 0.97274 1.22152 0.96904 0.97684 0.98798 1.22725 0.89572 1.05909 0.97050 1.22406 0.86563 1.00292 0.92636 1.46030 1.13388 1.57403 1.19797 1.20352 0.84647 0.78415 0.85243 1.90707 1.20527 1.51085 1.80815 0.92323 0.93244 0.91897 0.91560 0.87563 0.75241 0.94536 0.95934 0.80677 0.94729 0.90829 0.92423 0.90653 0.90373 0.90354 0.90433 0.92562 0.92246 0.93025 0.87068 0.89608 0.86651 0.87928 0.73470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.31 8.53 71.98 0.61 -5.69 16 2 C -0.09 -2.57 4.95 30.59 0.15 -2.42 16 3 C -0.12 -3.27 0.57 -52.94 -0.03 -3.30 16 4 C 0.53 19.08 5.67 87.66 0.50 19.58 16 5 O -0.57 -22.87 13.70 -3.04 -0.04 -22.91 16 6 N -0.70 -25.67 2.56 -442.52 -1.14 -26.80 16 7 C 0.15 5.46 1.72 44.99 0.08 5.53 16 8 H 0.07 3.02 7.07 -2.39 -0.02 3.00 16 9 C 0.15 6.41 5.62 86.38 0.49 6.89 16 10 N -0.75 -38.88 4.84 -343.45 -1.66 -40.54 16 11 C -0.34 -19.19 9.99 84.03 0.84 -18.35 16 12 H 0.06 3.56 7.83 -2.91 -0.02 3.53 16 13 C -0.10 -5.65 5.50 84.86 0.47 -5.19 16 14 N -0.96 -60.04 13.70 21.65 0.30 -59.74 16 15 Si 1.13 52.70 29.92 68.60 2.05 54.75 16 16 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 C -0.09 -2.75 2.70 -10.07 -0.03 -2.78 16 20 C -0.12 -3.08 5.35 31.67 0.17 -2.91 16 21 C -0.11 -2.43 6.91 31.88 0.22 -2.21 16 22 C -0.12 -2.81 6.83 31.67 0.22 -2.59 16 23 C -0.12 -3.37 6.22 31.32 0.19 -3.17 16 24 C -0.11 -2.27 5.92 31.65 0.19 -2.08 16 25 C 0.10 1.20 7.78 86.83 0.68 1.88 16 26 N -0.71 -11.94 6.24 -459.81 -2.87 -14.81 16 27 C 0.53 14.15 6.54 87.90 0.57 14.73 16 28 O -0.55 -18.46 14.58 -3.05 -0.04 -18.51 16 29 H 0.06 2.51 4.41 -2.39 -0.01 2.50 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.06 2.20 6.12 -2.39 -0.01 2.18 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.41 15.61 5.25 -92.71 -0.49 15.12 16 35 H 0.04 1.55 7.29 -2.39 -0.02 1.53 16 36 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.36 19.78 5.49 -92.71 -0.51 19.27 16 38 H 0.24 15.21 6.77 -92.70 -0.63 14.58 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.06 1.67 7.64 -2.39 -0.02 1.65 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.05 1.74 5.31 -2.39 -0.01 1.73 16 48 H 0.11 1.93 7.91 -2.39 -0.02 1.91 16 49 H 0.09 1.93 7.22 -2.39 -0.02 1.91 16 50 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 51 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.42 5.27 8.96 -92.71 -0.83 4.44 16 Total: -1.00 -74.64 390.79 1.17 -73.46 By element: Atomic # 1 Polarization: 57.90 SS G_CDS: -0.74 Total: 57.17 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.31 Total: -2.08 kcal Atomic # 7 Polarization: -136.52 SS G_CDS: -5.37 Total: -141.89 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -0.09 Total: -41.41 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 2.05 Total: 54.75 kcal Total: -74.64 1.17 -73.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699795395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.768 kcal (2) G-P(sol) polarization free energy of solvation -74.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds