Wall clock time and date at job start Sat Apr 11 2020 05:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46827 * 2 1 4 4 N 1.46896 * 109.46519 * 55.02079 * 3 2 1 5 5 C 1.46899 * 110.99784 * 55.71885 * 4 3 2 6 6 C 1.50707 * 109.46586 * 174.68047 * 5 4 3 7 7 O 1.21289 * 120.00361 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99617 * 179.97438 * 6 5 4 9 9 C 1.37094 * 119.99854 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00097 * 359.97438 * 9 8 6 11 11 C 1.38949 * 119.99806 * 180.02562 * 9 8 6 12 12 N 1.31403 * 120.00253 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99915 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47020 * 89.99496 * 13 11 9 15 15 H 1.48493 * 109.47249 * 209.99683 * 13 11 9 16 16 H 1.48497 * 109.46997 * 330.00043 * 13 11 9 17 17 C 1.53048 * 109.46086 * 295.05664 * 3 2 1 18 18 C 1.53185 * 109.31153 * 178.61896 * 17 3 2 19 19 N 1.46923 * 108.77963 * 54.63838 * 18 17 3 20 20 C 1.34781 * 120.63539 * 126.40970 * 19 18 17 21 21 O 1.21281 * 120.00268 * 179.97438 * 20 19 18 22 22 C 1.50699 * 119.99329 * 359.97438 * 20 19 18 23 23 C 1.53783 * 113.61941 * 277.49414 * 22 20 19 24 24 C 1.53777 * 87.08288 * 220.02392 * 23 22 20 25 25 C 1.53781 * 113.60966 * 179.97438 * 22 20 19 26 26 C 1.46930 * 118.73671 * 306.39281 * 19 18 17 27 27 C 1.53041 * 109.45557 * 174.99466 * 3 2 1 28 28 H 1.08999 * 109.47082 * 59.31449 * 1 2 3 29 29 H 1.08998 * 109.47647 * 179.31941 * 1 2 3 30 30 H 1.09000 * 109.47098 * 299.31824 * 1 2 3 31 31 H 1.09004 * 109.46978 * 119.99747 * 2 1 3 32 32 H 1.09003 * 109.47113 * 239.99534 * 2 1 3 33 33 H 1.00898 * 110.99835 * 291.76830 * 4 3 2 34 34 H 1.08996 * 109.47587 * 294.67981 * 5 4 3 35 35 H 1.08995 * 109.46920 * 54.68295 * 5 4 3 36 36 H 0.97001 * 120.00034 * 0.02562 * 8 6 5 37 37 H 0.97002 * 120.00536 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.49491 * 298.57434 * 17 3 2 39 39 H 1.09000 * 109.49121 * 58.66314 * 17 3 2 40 40 H 1.08991 * 109.58873 * 294.84777 * 18 17 3 41 41 H 1.09004 * 109.58564 * 174.42345 * 18 17 3 42 42 H 1.09001 * 112.85146 * 48.81195 * 22 20 19 43 43 H 1.08998 * 113.61260 * 334.57413 * 23 22 20 44 44 H 1.08994 * 113.60724 * 105.47087 * 23 22 20 45 45 H 1.09000 * 113.61866 * 270.88804 * 24 23 22 46 46 H 1.08998 * 113.69096 * 139.99204 * 24 23 22 47 47 H 1.09001 * 113.62185 * 254.53508 * 25 22 20 48 48 H 1.09001 * 113.61530 * 25.43790 * 25 22 20 49 49 H 1.09000 * 109.58333 * 293.81705 * 26 19 18 50 50 H 1.09001 * 109.58437 * 173.39482 * 26 19 18 51 51 H 1.09004 * 109.49722 * 301.33187 * 27 3 2 52 52 H 1.08998 * 109.50070 * 61.43473 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.4545 2.1687 1.1348 5 6 1.7382 1.4819 2.4020 6 6 1.2375 2.3197 3.5503 7 8 0.6970 3.3838 3.3343 8 7 1.3894 1.8859 4.8174 9 6 0.9334 2.6477 5.8620 10 1 0.4529 3.5956 5.6697 11 6 1.0905 2.2007 7.1682 12 7 1.6756 1.0477 7.4023 13 14 0.4699 3.2391 8.5917 14 1 -0.9357 2.8701 8.8976 15 1 1.3166 2.9968 9.7872 16 1 0.5351 4.6758 8.2217 17 6 1.6337 2.1269 -1.3072 18 6 2.1158 3.5808 -1.2890 19 7 3.5608 3.5966 -1.0234 20 6 4.4039 4.2470 -1.8498 21 8 5.5946 4.2530 -1.6193 22 6 3.8669 4.9667 -3.0600 23 6 3.6296 4.0465 -4.2691 24 6 4.1864 5.1825 -5.1433 25 6 4.9549 5.6580 -3.8986 26 6 4.0693 2.8902 0.1603 27 6 3.5651 1.4440 0.1259 28 1 -0.3633 0.5244 -0.8838 29 1 -0.3634 -1.0275 -0.0122 30 1 -0.3633 0.5032 0.8960 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 0.4619 2.2980 1.0080 34 1 1.2357 0.5148 2.4117 35 1 2.8134 1.3337 2.5021 36 1 1.8213 1.0347 4.9901 37 1 1.7849 0.7354 8.3141 38 1 2.0880 1.6034 -2.1484 39 1 0.5485 2.1046 -1.4075 40 1 1.5942 4.1290 -0.5046 41 1 1.9169 4.0439 -2.2555 42 1 3.0196 5.6118 -2.8275 43 1 4.2528 3.1523 -4.2662 44 1 2.5773 3.8298 -4.4528 45 1 3.4258 5.8862 -5.4816 46 1 4.8327 4.8375 -5.9504 47 1 4.9723 6.7418 -3.7835 48 1 5.9406 5.2044 -3.7944 49 1 3.7068 3.3821 1.0630 50 1 5.1592 2.8977 0.1501 51 1 3.8548 0.9358 1.0457 52 1 4.0013 0.9270 -0.7288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700215122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:55 Heat of formation + Delta-G solvation = -54.019831 kcal Electronic energy + Delta-G solvation = -30825.576925 eV Core-core repulsion = 26825.302331 eV Total energy + Delta-G solvation = -4000.274594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.80749 -39.51437 -37.96380 -37.33498 -35.37750 -33.92199 -32.00810 -31.32480 -31.11165 -30.56674 -27.27301 -26.52670 -25.89343 -25.00426 -24.18354 -23.21921 -22.12201 -20.41717 -19.49664 -19.08048 -18.44120 -17.87275 -17.47395 -16.17772 -16.10008 -15.77023 -15.57032 -15.16358 -14.77571 -14.64848 -14.39148 -14.28744 -14.08571 -13.76560 -13.49755 -13.35538 -13.00065 -12.81318 -12.60627 -12.48277 -12.34974 -12.15273 -12.10155 -11.91387 -11.64647 -11.56155 -11.40897 -11.34823 -11.12543 -11.08025 -10.92186 -10.79275 -10.66171 -10.50346 -10.39269 -10.25167 -10.20122 -9.58452 -9.49867 -8.63273 -8.42464 -7.97582 -7.92573 -6.41062 -3.81714 2.63457 3.05968 3.17900 3.26632 3.32583 3.92554 4.06977 4.25999 4.29309 4.33794 4.40621 4.54013 4.56106 4.67728 4.77688 4.89060 5.07534 5.11729 5.18492 5.26293 5.28419 5.31636 5.34566 5.40003 5.42573 5.46317 5.51799 5.58077 5.60713 5.66046 5.71761 5.73629 5.83607 5.84091 5.88504 5.90897 5.96749 6.00121 6.05689 6.10537 6.16094 6.21622 6.28616 6.35111 6.61390 7.23884 7.50699 7.55679 7.65758 8.07322 8.23385 8.62404 9.19029 9.55782 10.07386 10.76715 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016514 B = 0.002621 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.126035 B =10680.036914 C =11538.872631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.153 4.153 3 C 0.116 3.884 4 N -0.651 5.651 5 C 0.046 3.954 6 C 0.442 3.558 7 O -0.582 6.582 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.120 4.120 18 C 0.114 3.886 19 N -0.599 5.599 20 C 0.521 3.479 21 O -0.550 6.550 22 C -0.138 4.138 23 C -0.121 4.121 24 C -0.142 4.142 25 C -0.119 4.119 26 C 0.119 3.881 27 C -0.119 4.119 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.348 0.652 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.391 0.609 37 H 0.271 0.729 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.076 0.924 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 -0.674 -23.291 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.024 3.976 4 N -0.284 5.284 5 C -0.087 4.087 6 C 0.228 3.772 7 O -0.466 6.466 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.756 3.244 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.159 4.159 18 C -0.009 4.009 19 N -0.332 5.332 20 C 0.309 3.691 21 O -0.428 6.428 22 C -0.159 4.159 23 C -0.159 4.159 24 C -0.180 4.180 25 C -0.157 4.157 26 C -0.003 4.003 27 C -0.157 4.157 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.169 0.831 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.224 0.776 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.094 0.906 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.301 0.405 -23.043 23.161 hybrid contribution -0.797 -1.044 1.041 1.676 sum 1.503 -0.639 -22.002 22.062 Atomic orbital electron populations 1.21855 0.95669 1.01864 1.02116 1.22249 0.96459 0.98090 1.02447 1.20925 0.94510 0.91010 0.91164 1.60250 1.19745 1.48883 0.99498 1.21743 1.01588 0.95478 0.89853 1.19842 0.85472 0.88175 0.83741 1.90518 1.47712 1.24016 1.84384 1.41871 1.52796 1.21163 1.04394 1.19678 1.35193 1.03557 0.84313 0.87995 1.25248 0.97334 0.96621 0.98770 1.69605 1.43272 1.19665 1.21837 0.85875 0.78425 0.80044 0.80055 1.20469 1.20941 1.19427 1.21972 1.01352 0.95933 0.96630 1.21682 0.80341 0.97067 1.01779 1.48032 1.07415 1.51982 1.25729 1.20482 0.86213 0.78824 0.83540 1.90659 1.15894 1.62068 1.74176 1.22779 1.01129 0.99370 0.92648 1.22814 1.01765 0.97336 0.94007 1.22840 1.00029 0.98149 0.96946 1.22810 0.98325 1.00492 0.94023 1.21512 0.99324 0.91476 0.87997 1.21953 0.94345 0.97140 1.02287 0.92425 0.92703 0.92311 0.91389 0.91852 0.83149 0.93578 0.89598 0.77558 0.91911 0.91333 0.90480 0.89619 0.90501 0.87044 0.89813 0.90754 0.89938 0.91106 0.91114 0.88800 0.89708 0.89935 0.90568 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.07 37.16 0.34 -1.20 16 2 C -0.15 -1.52 4.40 -26.73 -0.12 -1.64 16 3 C 0.12 1.25 0.32 -131.56 -0.04 1.21 16 4 N -0.65 -9.18 3.97 -101.18 -0.40 -9.58 16 5 C 0.05 0.75 5.05 -4.97 -0.03 0.73 16 6 C 0.44 10.06 7.83 -10.98 -0.09 9.97 16 7 O -0.58 -15.28 15.89 5.55 0.09 -15.19 16 8 N -0.57 -14.10 5.29 -10.96 -0.06 -14.16 16 9 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 10 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 13 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 C -0.12 -1.09 4.76 -26.61 -0.13 -1.22 16 18 C 0.11 1.15 6.05 -3.72 -0.02 1.13 16 19 N -0.60 -7.39 2.97 -172.77 -0.51 -7.91 16 20 C 0.52 6.85 7.22 -10.98 -0.08 6.77 16 21 O -0.55 -9.25 15.31 5.56 0.09 -9.17 16 22 C -0.14 -1.30 2.72 -90.96 -0.25 -1.55 16 23 C -0.12 -0.90 7.22 -25.92 -0.19 -1.09 16 24 C -0.14 -0.96 8.08 -25.90 -0.21 -1.17 16 25 C -0.12 -1.07 7.41 -25.90 -0.19 -1.26 16 26 C 0.12 1.62 6.18 -3.71 -0.02 1.60 16 27 C -0.12 -1.37 4.62 -26.61 -0.12 -1.49 16 28 H 0.06 0.49 6.50 -51.93 -0.34 0.15 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.68 6.13 -51.93 -0.32 0.36 16 31 H 0.07 0.74 6.76 -51.93 -0.35 0.39 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.35 5.08 7.04 -39.29 -0.28 4.80 16 34 H 0.05 0.70 6.05 -51.93 -0.31 0.39 16 35 H 0.09 1.34 6.20 -51.93 -0.32 1.02 16 36 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.63 6.49 -51.93 -0.34 0.29 16 40 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 41 H 0.08 0.60 5.46 -51.93 -0.28 0.31 16 42 H 0.11 0.90 7.47 -51.93 -0.39 0.52 16 43 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 44 H 0.07 0.44 7.96 -51.93 -0.41 0.03 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 1.01 7.43 -51.93 -0.39 0.62 16 49 H 0.08 1.35 7.74 -51.93 -0.40 0.95 16 50 H 0.08 1.21 7.01 -51.93 -0.36 0.85 16 51 H 0.08 0.89 6.46 -51.93 -0.34 0.56 16 52 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -32.10 394.34 -8.98 -41.08 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -8.44 Total: 13.83 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.38 Total: 2.87 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.25 Total: -55.42 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.17 Total: -24.36 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.10 -8.98 -41.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700215122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.937 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds