Wall clock time and date at job start Sat Apr 11 2020 05:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47056 * 2 1 4 4 C 1.36766 * 125.80456 * 270.17204 * 3 2 1 5 5 C 1.47271 * 126.93957 * 0.03577 * 4 3 2 6 6 O 1.21623 * 119.99724 * 320.54342 * 5 4 3 7 7 N 1.34775 * 120.00073 * 140.54721 * 5 4 3 8 8 C 1.46503 * 119.99839 * 4.39726 * 7 5 4 9 9 C 1.46492 * 119.99858 * 184.39802 * 7 5 4 10 10 C 1.53002 * 109.47291 * 89.99890 * 9 7 5 11 11 O 1.42899 * 109.47031 * 64.99852 * 10 9 7 12 12 C 1.42899 * 114.00187 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47434 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47073 * 65.00018 * 13 12 11 15 15 C 1.46504 * 120.00047 * 270.00248 * 14 13 12 16 16 C 1.36939 * 120.00056 * 89.99989 * 14 13 12 17 17 H 1.07999 * 120.00086 * 21.80796 * 16 14 13 18 18 C 1.38821 * 119.99943 * 201.81187 * 16 14 13 19 19 N 1.31618 * 119.99700 * 15.63845 * 18 16 14 20 20 Si 1.86797 * 119.99976 * 195.64036 * 18 16 14 21 21 H 1.48501 * 109.47196 * 94.97718 * 20 18 16 22 22 H 1.48497 * 109.47341 * 214.97642 * 20 18 16 23 23 H 1.48504 * 109.46953 * 334.97940 * 20 18 16 24 24 C 1.46684 * 106.11697 * 180.28303 * 4 3 2 25 25 C 1.34489 * 106.33376 * 359.74754 * 24 4 3 26 26 N 1.34662 * 125.80319 * 90.02189 * 3 2 1 27 27 C 1.46503 * 124.84860 * 359.95977 * 26 3 2 28 28 H 1.08999 * 109.46862 * 60.00144 * 1 2 3 29 29 H 1.09005 * 109.46836 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47287 * 300.00015 * 1 2 3 31 31 H 1.08996 * 109.47466 * 239.99539 * 2 1 3 32 32 H 1.09009 * 109.46768 * 119.99799 * 2 1 3 33 33 H 1.08998 * 109.47043 * 83.95745 * 8 7 5 34 34 H 1.09005 * 109.46549 * 203.95892 * 8 7 5 35 35 H 1.08993 * 109.47165 * 323.95621 * 8 7 5 36 36 H 1.09004 * 109.47352 * 209.99677 * 9 7 5 37 37 H 1.09001 * 109.47427 * 329.99889 * 9 7 5 38 38 H 1.08995 * 109.47576 * 184.99806 * 10 9 7 39 39 H 1.09001 * 109.46887 * 305.00083 * 10 9 7 40 40 H 1.09000 * 109.47171 * 300.00039 * 12 11 10 41 41 H 1.09001 * 109.47033 * 59.99695 * 12 11 10 42 42 H 1.09003 * 109.47376 * 184.99729 * 13 12 11 43 43 H 1.08998 * 109.47131 * 305.00136 * 13 12 11 44 44 H 1.08998 * 109.47030 * 92.40284 * 15 14 13 45 45 H 1.08996 * 109.47169 * 212.40106 * 15 14 13 46 46 H 1.09000 * 109.46814 * 332.40326 * 15 14 13 47 47 H 0.97004 * 119.99164 * 180.02562 * 19 18 16 48 48 H 1.07999 * 126.83327 * 179.72836 * 24 4 3 49 49 H 1.07995 * 125.56848 * 180.02562 * 25 24 4 50 50 H 1.09001 * 109.47583 * 269.72340 * 27 26 3 51 51 H 1.09002 * 109.47392 * 149.72312 * 27 26 3 52 52 H 1.09008 * 109.47225 * 29.72668 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2959 2.1762 -1.1092 5 6 2.1456 1.7660 -2.5156 6 8 2.4560 0.6408 -2.8573 7 7 1.6641 2.6375 -3.4240 8 6 1.3811 4.0209 -3.0336 9 6 1.4239 2.2014 -4.8017 10 6 -0.0069 1.6740 -4.9276 11 8 -0.9296 2.7418 -4.7027 12 6 -2.3017 2.3539 -4.7972 13 6 -3.1943 3.5695 -4.5393 14 7 -2.9961 4.5556 -5.6044 15 6 -1.9669 5.5888 -5.4638 16 6 -3.7727 4.5117 -6.7314 17 1 -4.7306 4.0134 -6.7080 18 6 -3.3287 5.1075 -7.9039 19 7 -2.0618 5.4393 -8.0347 20 14 -4.5294 5.4385 -9.2961 21 1 -5.0319 6.8323 -9.1957 22 1 -3.8405 5.2534 -10.5985 23 1 -5.6705 4.4929 -9.2009 24 6 2.7642 3.4755 -0.6151 25 6 2.7398 3.4007 0.7275 26 7 2.2953 2.1634 1.0921 27 6 2.1332 1.7058 2.4744 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.2978 4.6081 -3.0866 34 1 0.6385 4.4445 -3.7099 35 1 0.9963 4.0391 -2.0140 36 1 1.5612 3.0444 -5.4789 37 1 2.1269 1.4095 -5.0601 38 1 -0.1579 1.2681 -5.9278 39 1 -0.1714 0.8899 -4.1885 40 1 -2.5005 1.9618 -5.7946 41 1 -2.5135 1.5840 -4.0552 42 1 -4.2384 3.2568 -4.5234 43 1 -2.9336 4.0145 -3.5791 44 1 -1.0380 5.2400 -5.9151 45 1 -2.2951 6.4991 -5.9654 46 1 -1.8020 5.7958 -4.4065 47 1 -1.7517 5.8560 -8.8539 48 1 3.0684 4.3234 -1.2108 49 1 3.0249 4.1911 1.4060 50 1 1.1259 1.9399 2.8189 51 1 2.8610 2.2087 3.1113 52 1 2.2922 0.6285 2.5216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707232725.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:08:10 Heat of formation + Delta-G solvation = -3.934846 kcal Electronic energy + Delta-G solvation = -30679.496984 eV Core-core repulsion = 26681.394238 eV Total energy + Delta-G solvation = -3998.102746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53837 -39.21706 -37.33109 -35.48991 -34.83136 -33.77034 -33.03178 -31.45064 -29.95095 -28.44395 -27.96386 -26.78953 -26.09973 -25.65850 -23.85647 -22.96024 -22.71579 -21.32384 -20.24842 -19.87982 -18.33334 -17.21616 -16.72515 -16.27425 -16.10585 -15.67352 -15.43753 -15.21725 -14.98516 -14.60546 -14.31936 -14.16164 -13.65252 -13.54429 -13.40624 -13.27299 -12.98664 -12.91618 -12.81040 -12.61437 -12.27945 -12.20179 -12.05320 -12.00645 -11.70713 -11.53339 -11.28042 -11.25659 -11.08708 -10.87139 -10.78416 -10.67791 -10.42968 -10.02423 -9.85648 -9.75604 -9.63019 -8.81267 -8.64308 -8.43939 -8.38881 -8.18557 -6.63251 -5.63101 -3.06012 1.84045 2.38010 2.62855 3.27168 3.42856 3.49465 3.50719 3.55624 4.40594 4.42622 4.47920 4.58750 4.71248 4.76541 4.88443 5.03464 5.08290 5.16099 5.36620 5.40444 5.48032 5.49544 5.52736 5.61025 5.63199 5.66417 5.78242 5.82826 5.86564 5.90722 5.95176 6.05518 6.10264 6.10844 6.19579 6.25714 6.29185 6.35665 6.64239 6.68786 6.80780 6.85906 6.97528 6.98559 7.10776 7.51972 7.69907 7.86512 7.94968 8.01676 8.48488 8.49545 9.34182 9.98801 10.49363 11.41850 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018987 B = 0.002586 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.371827 B =10824.450822 C =10869.860923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C 0.095 3.905 4 C -0.222 4.222 5 C 0.592 3.408 6 O -0.557 6.557 7 N -0.597 5.597 8 C 0.084 3.916 9 C 0.121 3.879 10 C 0.050 3.950 11 O -0.365 6.365 12 C 0.045 3.955 13 C 0.154 3.846 14 N -0.595 5.595 15 C 0.174 3.826 16 C -0.255 4.255 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.281 1.281 24 C -0.164 4.164 25 C -0.021 4.021 26 N -0.446 5.446 27 C 0.069 3.931 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.020 0.980 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.030 0.970 45 H 0.037 0.963 46 H -0.006 1.006 47 H 0.250 0.750 48 H 0.147 0.853 49 H 0.165 0.835 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.169 -7.016 21.352 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.020 4.020 4 C -0.232 4.232 5 C 0.381 3.619 6 O -0.437 6.437 7 N -0.329 5.329 8 C -0.059 4.059 9 C -0.002 4.002 10 C -0.028 4.028 11 O -0.284 6.284 12 C -0.035 4.035 13 C 0.026 3.974 14 N -0.318 5.318 15 C 0.030 3.970 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.206 1.206 24 C -0.188 4.188 25 C -0.147 4.147 26 N -0.122 5.122 27 C -0.073 4.073 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.056 0.944 46 H 0.012 0.988 47 H 0.060 0.940 48 H 0.165 0.835 49 H 0.183 0.817 50 H 0.092 0.908 51 H 0.103 0.897 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.432 -7.368 21.407 24.927 hybrid contribution -0.640 0.066 -0.898 1.104 sum 9.792 -7.302 20.509 23.871 Atomic orbital electron populations 1.21707 0.94172 1.02017 1.02250 1.20308 0.96374 0.89625 1.04158 1.20134 1.02487 0.94273 0.85146 1.20056 1.15274 0.95921 0.91926 1.17457 0.76110 0.84049 0.84253 1.90708 1.51656 1.20635 1.80747 1.47555 1.63621 1.11654 1.10024 1.21949 1.00687 0.81098 1.02171 1.21526 0.94911 1.01403 0.82314 1.22760 0.90089 0.90645 0.99349 1.87936 1.15154 1.33189 1.92087 1.23421 0.82364 0.98868 0.98800 1.20869 0.95521 0.88917 0.92095 1.43890 1.40937 1.29562 1.17375 1.20663 0.92173 0.91080 0.93107 1.19213 0.97522 1.33634 0.88114 0.91606 1.24964 0.95510 1.02218 0.97002 1.70115 1.12468 1.45653 1.26302 0.86307 0.80492 0.78159 0.81996 1.21656 1.21921 1.20603 1.22114 1.06492 0.96902 0.93313 1.21663 1.08534 0.88311 0.96224 1.43452 1.51090 1.11744 1.05903 1.22061 1.03184 1.01784 0.80269 0.92030 0.91940 0.93123 0.87923 0.91366 0.93433 0.89498 0.91060 0.89360 0.88997 0.93064 0.94314 0.93574 0.96149 0.92596 0.93939 0.95158 0.94443 0.98784 0.93984 0.83504 0.81735 0.90772 0.89726 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.89 37.16 0.37 -1.06 16 2 C -0.07 -0.70 5.91 -27.88 -0.16 -0.87 16 3 C 0.10 1.13 6.14 -81.89 -0.50 0.63 16 4 C -0.22 -3.07 5.38 -103.35 -0.56 -3.62 16 5 C 0.59 9.53 7.44 -12.59 -0.09 9.43 16 6 O -0.56 -10.27 15.17 5.26 0.08 -10.19 16 7 N -0.60 -9.20 2.84 -182.91 -0.52 -9.71 16 8 C 0.08 1.15 8.88 59.85 0.53 1.68 16 9 C 0.12 1.92 5.82 -4.05 -0.02 1.89 16 10 C 0.05 0.87 6.28 37.16 0.23 1.10 16 11 O -0.36 -7.31 8.84 -35.23 -0.31 -7.62 16 12 C 0.05 0.90 6.28 37.16 0.23 1.13 16 13 C 0.15 3.27 6.12 -4.04 -0.02 3.24 16 14 N -0.60 -15.29 2.89 -181.12 -0.52 -15.81 16 15 C 0.17 4.41 8.63 59.85 0.52 4.92 16 16 C -0.26 -7.11 9.65 -15.06 -0.15 -7.25 16 17 H 0.07 1.79 7.87 -52.49 -0.41 1.38 16 18 C 0.00 0.04 5.02 -17.43 -0.09 -0.04 16 19 N -0.90 -26.55 10.81 55.49 0.60 -25.95 16 20 Si 0.90 22.13 29.58 -169.99 -5.03 17.11 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.16 -1.86 8.86 -37.50 -0.33 -2.19 16 25 C -0.02 -0.20 11.34 -16.83 -0.19 -0.39 16 26 N -0.45 -4.15 3.09 -119.88 -0.37 -4.52 16 27 C 0.07 0.35 10.82 59.85 0.65 1.00 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 1.31 6.67 -51.93 -0.35 0.96 16 32 H 0.07 0.54 6.92 -51.92 -0.36 0.18 16 33 H 0.05 0.56 7.34 -51.93 -0.38 0.17 16 34 H 0.09 1.37 7.25 -51.93 -0.38 0.99 16 35 H 0.07 0.94 6.07 -51.93 -0.32 0.62 16 36 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.09 1.41 7.36 -51.93 -0.38 1.03 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 43 H 0.04 0.84 7.87 -51.93 -0.41 0.44 16 44 H 0.03 0.82 7.52 -51.93 -0.39 0.43 16 45 H 0.04 1.01 7.15 -51.93 -0.37 0.64 16 46 H -0.01 -0.14 7.86 -51.93 -0.41 -0.55 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 48 H 0.15 1.47 6.68 -52.49 -0.35 1.12 16 49 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 50 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.08 0.27 8.13 -51.93 -0.42 -0.15 16 52 H 0.08 0.35 6.87 -51.92 -0.36 0.00 16 LS Contribution 416.15 15.07 6.27 6.27 Total: -1.00 -34.32 416.15 -8.45 -42.77 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -9.06 Total: -1.95 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 0.41 Total: 9.61 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.81 Total: -56.00 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.23 Total: -17.81 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.32 -8.45 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707232725.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.838 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds