Wall clock time and date at job start Sat Apr 11 2020 05:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47056 * 2 1 4 4 C 1.36766 * 125.80456 * 270.17204 * 3 2 1 5 5 C 1.47271 * 126.93957 * 0.03577 * 4 3 2 6 6 O 1.21623 * 119.99724 * 320.54342 * 5 4 3 7 7 N 1.34775 * 120.00073 * 140.54721 * 5 4 3 8 8 C 1.46503 * 119.99839 * 4.39726 * 7 5 4 9 9 C 1.46492 * 119.99858 * 184.39802 * 7 5 4 10 10 C 1.53002 * 109.47291 * 89.99890 * 9 7 5 11 11 O 1.42899 * 109.47031 * 64.99852 * 10 9 7 12 12 C 1.42899 * 114.00187 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47434 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47073 * 65.00018 * 13 12 11 15 15 C 1.46504 * 120.00047 * 270.00248 * 14 13 12 16 16 C 1.36939 * 120.00056 * 89.99989 * 14 13 12 17 17 H 1.07999 * 120.00086 * 21.80796 * 16 14 13 18 18 C 1.38821 * 119.99943 * 201.81187 * 16 14 13 19 19 N 1.31618 * 119.99700 * 15.63845 * 18 16 14 20 20 Si 1.86797 * 119.99976 * 195.64036 * 18 16 14 21 21 H 1.48501 * 109.47196 * 94.97718 * 20 18 16 22 22 H 1.48497 * 109.47341 * 214.97642 * 20 18 16 23 23 H 1.48504 * 109.46953 * 334.97940 * 20 18 16 24 24 C 1.46684 * 106.11697 * 180.28303 * 4 3 2 25 25 C 1.34489 * 106.33376 * 359.74754 * 24 4 3 26 26 N 1.34662 * 125.80319 * 90.02189 * 3 2 1 27 27 C 1.46503 * 124.84860 * 359.95977 * 26 3 2 28 28 H 1.08999 * 109.46862 * 60.00144 * 1 2 3 29 29 H 1.09005 * 109.46836 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47287 * 300.00015 * 1 2 3 31 31 H 1.08996 * 109.47466 * 239.99539 * 2 1 3 32 32 H 1.09009 * 109.46768 * 119.99799 * 2 1 3 33 33 H 1.08998 * 109.47043 * 83.95745 * 8 7 5 34 34 H 1.09005 * 109.46549 * 203.95892 * 8 7 5 35 35 H 1.08993 * 109.47165 * 323.95621 * 8 7 5 36 36 H 1.09004 * 109.47352 * 209.99677 * 9 7 5 37 37 H 1.09001 * 109.47427 * 329.99889 * 9 7 5 38 38 H 1.08995 * 109.47576 * 184.99806 * 10 9 7 39 39 H 1.09001 * 109.46887 * 305.00083 * 10 9 7 40 40 H 1.09000 * 109.47171 * 300.00039 * 12 11 10 41 41 H 1.09001 * 109.47033 * 59.99695 * 12 11 10 42 42 H 1.09003 * 109.47376 * 184.99729 * 13 12 11 43 43 H 1.08998 * 109.47131 * 305.00136 * 13 12 11 44 44 H 1.08998 * 109.47030 * 92.40284 * 15 14 13 45 45 H 1.08996 * 109.47169 * 212.40106 * 15 14 13 46 46 H 1.09000 * 109.46814 * 332.40326 * 15 14 13 47 47 H 0.97004 * 119.99164 * 180.02562 * 19 18 16 48 48 H 1.07999 * 126.83327 * 179.72836 * 24 4 3 49 49 H 1.07995 * 125.56848 * 180.02562 * 25 24 4 50 50 H 1.09001 * 109.47583 * 269.72340 * 27 26 3 51 51 H 1.09002 * 109.47392 * 149.72312 * 27 26 3 52 52 H 1.09008 * 109.47225 * 29.72668 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2959 2.1762 -1.1092 5 6 2.1456 1.7660 -2.5156 6 8 2.4560 0.6408 -2.8573 7 7 1.6641 2.6375 -3.4240 8 6 1.3811 4.0209 -3.0336 9 6 1.4239 2.2014 -4.8017 10 6 -0.0069 1.6740 -4.9276 11 8 -0.9296 2.7418 -4.7027 12 6 -2.3017 2.3539 -4.7972 13 6 -3.1943 3.5695 -4.5393 14 7 -2.9961 4.5556 -5.6044 15 6 -1.9669 5.5888 -5.4638 16 6 -3.7727 4.5117 -6.7314 17 1 -4.7306 4.0134 -6.7080 18 6 -3.3287 5.1075 -7.9039 19 7 -2.0618 5.4393 -8.0347 20 14 -4.5294 5.4385 -9.2961 21 1 -5.0319 6.8323 -9.1957 22 1 -3.8405 5.2534 -10.5985 23 1 -5.6705 4.4929 -9.2009 24 6 2.7642 3.4755 -0.6151 25 6 2.7398 3.4007 0.7275 26 7 2.2953 2.1634 1.0921 27 6 2.1332 1.7058 2.4744 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.2978 4.6081 -3.0866 34 1 0.6385 4.4445 -3.7099 35 1 0.9963 4.0391 -2.0140 36 1 1.5612 3.0444 -5.4789 37 1 2.1269 1.4095 -5.0601 38 1 -0.1579 1.2681 -5.9278 39 1 -0.1714 0.8899 -4.1885 40 1 -2.5005 1.9618 -5.7946 41 1 -2.5135 1.5840 -4.0552 42 1 -4.2384 3.2568 -4.5234 43 1 -2.9336 4.0145 -3.5791 44 1 -1.0380 5.2400 -5.9151 45 1 -2.2951 6.4991 -5.9654 46 1 -1.8020 5.7958 -4.4065 47 1 -1.7517 5.8560 -8.8539 48 1 3.0684 4.3234 -1.2108 49 1 3.0249 4.1911 1.4060 50 1 1.1259 1.9399 2.8189 51 1 2.8610 2.2087 3.1113 52 1 2.2922 0.6285 2.5216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707232725.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:08:09 Heat of formation + Delta-G solvation = -23.889867 kcal Electronic energy + Delta-G solvation = -30680.362298 eV Core-core repulsion = 26681.394238 eV Total energy + Delta-G solvation = -3998.968060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.34014 -40.42070 -38.90970 -37.19712 -36.31455 -34.59107 -33.82172 -33.37101 -31.37270 -29.69458 -29.23202 -27.79008 -27.57533 -27.16658 -24.93190 -24.68793 -23.83530 -22.32699 -22.07615 -20.80450 -19.30765 -18.74816 -18.12652 -17.54487 -17.36783 -16.99957 -16.74846 -16.45159 -16.23747 -16.10428 -15.41694 -15.31189 -15.14796 -14.91603 -14.83448 -14.30955 -14.13916 -14.06978 -13.77524 -13.64103 -13.50628 -13.33948 -13.16420 -13.03077 -13.00103 -12.81153 -12.74134 -12.66827 -12.59184 -12.41506 -12.28190 -12.23731 -11.98373 -11.89569 -11.76424 -11.69656 -10.87952 -10.57936 -10.38110 -9.62989 -9.40856 -9.05065 -8.71803 -7.77025 -5.22243 0.89121 1.47882 1.49073 1.57801 1.58035 1.87890 2.21990 2.44231 2.54580 2.91757 3.35590 3.71429 3.77221 3.85311 4.01706 4.06353 4.12571 4.19521 4.31299 4.33302 4.38078 4.47300 4.47631 4.52912 4.54789 4.60601 4.62763 4.64034 4.65978 4.73831 4.75146 4.84250 4.90222 4.95851 4.99788 5.01236 5.09876 5.11523 5.17446 5.24733 5.28290 5.40611 5.58376 5.69147 5.85403 5.85821 6.17305 6.37183 6.40965 6.45141 6.56243 7.21260 7.27677 7.94439 8.39863 9.26563 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018987 B = 0.002586 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.371827 B =10824.450822 C =10869.860923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C 0.089 3.911 4 C -0.261 4.261 5 C 0.587 3.413 6 O -0.592 6.592 7 N -0.600 5.600 8 C 0.093 3.907 9 C 0.126 3.874 10 C 0.055 3.945 11 O -0.379 6.379 12 C 0.053 3.947 13 C 0.151 3.849 14 N -0.611 5.611 15 C 0.194 3.806 16 C -0.263 4.263 17 H 0.071 0.929 18 C -0.053 4.053 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.269 1.269 24 C -0.185 4.185 25 C -0.007 4.007 26 N -0.441 5.441 27 C 0.059 3.941 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.039 0.961 40 H 0.020 0.980 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.003 0.997 45 H 0.010 0.990 46 H 0.022 0.978 47 H 0.245 0.755 48 H 0.153 0.847 49 H 0.202 0.798 50 H 0.086 0.914 51 H 0.109 0.891 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.774 -6.990 24.270 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C -0.029 4.029 4 C -0.271 4.271 5 C 0.379 3.621 6 O -0.474 6.474 7 N -0.331 5.331 8 C -0.050 4.050 9 C 0.003 3.997 10 C -0.023 4.023 11 O -0.298 6.298 12 C -0.027 4.027 13 C 0.025 3.975 14 N -0.334 5.334 15 C 0.049 3.951 16 C -0.393 4.393 17 H 0.088 0.912 18 C -0.249 4.249 19 N -0.578 5.578 20 Si 0.793 3.207 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.193 1.193 24 C -0.209 4.209 25 C -0.134 4.134 26 N -0.116 5.116 27 C -0.081 4.081 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.022 0.978 45 H 0.029 0.971 46 H 0.040 0.960 47 H 0.054 0.946 48 H 0.171 0.829 49 H 0.219 0.781 50 H 0.105 0.895 51 H 0.127 0.873 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.015 -7.345 24.375 27.357 hybrid contribution -0.495 0.016 -1.667 1.739 sum 9.519 -7.330 22.709 25.691 Atomic orbital electron populations 1.21644 0.93779 1.02632 1.01385 1.20274 0.96619 0.89204 1.04141 1.20279 1.02224 0.94722 0.85678 1.20099 1.18049 0.97964 0.90996 1.17910 0.75345 0.83517 0.85354 1.90670 1.53267 1.22012 1.81491 1.47640 1.63449 1.12326 1.09659 1.21920 1.01025 0.80285 1.01756 1.21413 0.94016 1.01294 0.83022 1.22784 0.90362 0.90125 0.99051 1.87919 1.15395 1.34406 1.92110 1.23223 0.82389 0.98864 0.98191 1.21048 0.96591 0.88508 0.91380 1.44117 1.40648 1.30820 1.17777 1.20348 0.90835 0.89868 0.94071 1.19550 0.97937 1.32970 0.88845 0.91159 1.25721 0.97003 1.02677 0.99456 1.70280 1.14074 1.46750 1.26664 0.85290 0.78666 0.78005 0.78711 1.21485 1.22497 1.19321 1.22267 1.07726 0.96319 0.94546 1.22218 1.06343 0.88793 0.96014 1.43749 1.49537 1.11395 1.06882 1.22419 1.04783 1.02803 0.78066 0.95131 0.90631 0.91551 0.90818 0.88432 0.91441 0.91706 0.90366 0.89722 0.88737 0.93446 0.94290 0.96152 0.93196 0.91212 0.92232 0.97837 0.97104 0.95964 0.94569 0.82919 0.78092 0.89544 0.87262 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 71.98 0.71 -1.86 16 2 C -0.06 -1.30 5.91 29.85 0.18 -1.12 16 3 C 0.09 2.00 6.14 41.78 0.26 2.26 16 4 C -0.26 -7.15 5.38 -19.04 -0.10 -7.26 16 5 C 0.59 19.45 7.44 86.62 0.64 20.10 16 6 O -0.59 -22.78 15.17 -4.10 -0.06 -22.84 16 7 N -0.60 -18.95 2.84 -850.85 -2.41 -21.37 16 8 C 0.09 2.55 8.88 127.77 1.13 3.68 16 9 C 0.13 4.14 5.82 86.38 0.50 4.64 16 10 C 0.05 1.96 6.28 71.98 0.45 2.41 16 11 O -0.38 -15.36 8.84 -148.98 -1.32 -16.67 16 12 C 0.05 2.08 6.28 71.98 0.45 2.53 16 13 C 0.15 6.24 6.12 86.38 0.53 6.77 16 14 N -0.61 -31.29 2.89 -726.94 -2.10 -33.39 16 15 C 0.19 9.90 8.63 127.77 1.10 11.00 16 16 C -0.26 -14.62 9.65 84.04 0.81 -13.81 16 17 H 0.07 3.78 7.87 -2.91 -0.02 3.75 16 18 C -0.05 -3.03 5.02 84.86 0.43 -2.61 16 19 N -0.93 -56.12 10.81 21.65 0.23 -55.89 16 20 Si 0.96 45.85 29.58 68.60 2.03 47.87 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 C -0.18 -3.94 8.86 23.62 0.21 -3.73 16 25 C -0.01 -0.11 11.34 83.12 0.94 0.84 16 26 N -0.44 -6.94 3.09 -533.19 -1.65 -8.58 16 27 C 0.06 0.37 10.82 127.77 1.38 1.75 16 28 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.94 6.67 -2.39 -0.02 1.92 16 32 H 0.10 1.33 6.92 -2.38 -0.02 1.31 16 33 H 0.07 1.56 7.34 -2.39 -0.02 1.54 16 34 H 0.06 2.08 7.25 -2.38 -0.02 2.06 16 35 H 0.08 2.04 6.07 -2.39 -0.01 2.02 16 36 H 0.08 2.82 8.07 -2.39 -0.02 2.80 16 37 H 0.09 3.04 7.36 -2.39 -0.02 3.03 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 2.67 8.03 -2.39 -0.02 2.66 16 43 H 0.06 2.25 7.87 -2.39 -0.02 2.24 16 44 H 0.00 0.19 7.52 -2.39 -0.02 0.17 16 45 H 0.01 0.57 7.15 -2.39 -0.02 0.55 16 46 H 0.02 0.98 7.86 -2.39 -0.02 0.96 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 48 H 0.15 2.88 6.68 -2.91 -0.02 2.86 16 49 H 0.20 1.52 8.06 -2.91 -0.02 1.49 16 50 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.11 0.19 8.13 -2.39 -0.02 0.17 16 52 H 0.09 0.43 6.87 -2.38 -0.02 0.41 16 Total: -1.00 -75.88 416.15 5.24 -70.64 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.88 Total: 14.62 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 9.63 Total: 25.60 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -5.92 Total: -119.23 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.38 Total: -39.51 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Total: -75.88 5.24 -70.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707232725.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.752 kcal (2) G-P(sol) polarization free energy of solvation -75.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds