Wall clock time and date at job start Sat Apr 11 2020 05:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47349 * 2 1 4 4 C 1.50702 * 112.85070 * 298.69672 * 3 2 1 5 5 O 1.21284 * 119.99976 * 111.92665 * 4 3 2 6 6 N 1.34776 * 119.99634 * 291.93349 * 4 3 2 7 7 C 1.46503 * 119.99734 * 174.95009 * 6 4 3 8 8 C 1.52991 * 109.47398 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.47165 * 64.99722 * 8 7 6 10 10 N 1.46909 * 109.47381 * 305.00474 * 8 7 6 11 11 C 1.46901 * 110.99413 * 298.20794 * 10 8 7 12 12 C 1.50709 * 109.46593 * 182.62318 * 11 10 8 13 13 O 1.21289 * 119.99832 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99717 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99994 * 179.97438 * 14 12 11 16 16 H 1.07993 * 119.99872 * 359.97438 * 15 14 12 17 17 C 1.38947 * 119.99666 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00531 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99470 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47171 * 89.99826 * 19 17 15 21 21 H 1.48502 * 109.47107 * 209.99869 * 19 17 15 22 22 H 1.48501 * 109.46963 * 329.99709 * 19 17 15 23 23 C 1.53000 * 109.47484 * 185.00103 * 8 7 6 24 24 C 1.53002 * 117.49857 * 254.01644 * 23 8 7 25 25 C 1.53004 * 117.49810 * 185.35639 * 23 8 7 26 26 C 1.53782 * 113.68531 * 69.96106 * 3 2 1 27 27 C 1.53776 * 87.08106 * 89.13163 * 26 3 2 28 28 C 1.53774 * 113.61759 * 167.49572 * 3 2 1 29 29 H 1.09008 * 109.47163 * 185.09250 * 1 2 3 30 30 H 1.08998 * 109.47493 * 305.09512 * 1 2 3 31 31 H 1.08998 * 109.47341 * 65.09966 * 1 2 3 32 32 H 1.09007 * 109.47449 * 240.00360 * 2 1 3 33 33 H 1.08997 * 109.47080 * 120.00213 * 2 1 3 34 34 H 0.96996 * 120.00451 * 354.94957 * 6 4 3 35 35 H 1.09008 * 109.46915 * 60.00034 * 7 6 4 36 36 H 1.08998 * 109.47017 * 300.00321 * 7 6 4 37 37 H 1.00902 * 110.99525 * 62.16032 * 10 8 7 38 38 H 1.08996 * 109.46755 * 302.61495 * 11 10 8 39 39 H 1.08998 * 109.47476 * 62.62374 * 11 10 8 40 40 H 0.97007 * 120.00190 * 359.97438 * 14 12 11 41 41 H 0.97003 * 119.99845 * 180.02562 * 18 17 15 42 42 H 1.09002 * 115.54933 * 39.68894 * 23 8 7 43 43 H 1.08995 * 117.49712 * 0.02562 * 24 23 8 44 44 H 1.08997 * 117.49687 * 145.02127 * 24 23 8 45 45 H 1.09000 * 117.49926 * 214.98130 * 25 23 8 46 46 H 1.09006 * 117.49895 * 359.97438 * 25 23 8 47 47 H 1.09007 * 113.61357 * 203.67544 * 26 3 2 48 48 H 1.08993 * 113.61939 * 334.57974 * 26 3 2 49 49 H 1.09001 * 113.61493 * 270.88253 * 27 26 3 50 50 H 1.09000 * 113.61946 * 139.98136 * 27 26 3 51 51 H 1.09010 * 113.61354 * 25.35147 * 28 3 2 52 52 H 1.08999 * 113.61807 * 156.25458 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6064 2.2165 -1.2182 5 8 0.8156 3.1293 -1.1069 6 7 2.0974 1.8943 -2.4313 7 6 1.5940 2.5718 -3.6287 8 6 2.3120 2.0249 -4.8640 9 1 2.0554 0.9740 -4.9979 10 7 3.7642 2.1551 -4.6841 11 6 4.1528 3.5647 -4.5428 12 6 5.6520 3.6630 -4.4251 13 8 6.3300 2.6577 -4.4555 14 7 6.2393 4.8679 -4.2851 15 6 7.6032 4.9574 -4.1775 16 1 8.2068 4.0624 -4.2046 17 6 8.2086 6.1998 -4.0337 18 7 7.4741 7.2889 -4.0002 19 14 10.0670 6.3217 -3.8878 20 1 10.6614 6.4654 -5.2410 21 1 10.4223 7.5043 -3.0630 22 1 10.5947 5.0922 -3.2435 23 6 1.8781 2.8172 -6.0988 24 6 0.9233 2.1317 -7.0784 25 6 2.3909 2.3415 -7.4596 26 6 1.7910 2.1858 1.3230 27 6 3.1537 1.6480 1.7906 28 6 3.5422 1.5648 0.3051 29 1 -0.3634 -1.0237 0.0912 30 1 -0.3634 0.5908 0.8408 31 1 -0.3634 0.4327 -0.9321 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 2.7840 1.2139 -2.5115 35 1 1.7797 3.6427 -3.5454 36 1 0.5226 2.3951 -3.7228 37 1 4.0809 1.6117 -3.8950 38 1 3.8197 4.1228 -5.4177 39 1 3.6900 3.9812 -3.6481 40 1 5.6971 5.6719 -4.2604 41 1 7.8969 8.1561 -3.9002 42 1 1.7628 3.8911 -5.9518 43 1 0.6040 1.1165 -6.8429 44 1 0.1801 2.7547 -7.5760 45 1 2.6127 3.1024 -8.2079 46 1 3.0379 1.4643 -7.4751 47 1 1.7630 3.2702 1.2160 48 1 0.9482 1.7938 1.8922 49 1 3.0946 0.6766 2.2816 50 1 3.7392 2.3736 2.3551 51 1 4.1132 0.6712 0.0525 52 1 3.9930 2.4793 -0.0802 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713116400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:08:14 Heat of formation + Delta-G solvation = -58.861534 kcal Electronic energy + Delta-G solvation = -30455.479542 eV Core-core repulsion = 26454.994996 eV Total energy + Delta-G solvation = -4000.484546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81966 -40.47301 -39.44534 -38.60741 -36.49316 -35.94165 -34.59898 -33.32119 -33.24313 -30.51907 -28.30037 -27.20067 -26.57256 -25.97296 -24.37229 -23.53433 -23.08480 -22.00714 -21.52119 -20.50017 -19.84348 -19.60349 -18.19922 -18.10036 -17.19810 -16.92485 -16.74736 -16.51874 -16.27171 -16.13835 -15.77160 -15.72677 -15.33537 -14.94433 -14.77145 -14.58462 -14.40614 -14.06767 -13.90415 -13.63521 -13.50731 -13.38510 -13.09229 -12.96687 -12.76484 -12.67716 -12.42447 -12.39853 -12.28693 -12.24679 -12.13372 -11.96427 -11.91921 -11.50772 -11.32933 -11.19120 -11.14335 -11.07400 -10.58798 -10.35701 -10.17393 -10.02276 -9.40253 -8.47072 -5.96133 1.37307 1.40797 1.53737 1.58135 2.04106 2.08169 2.28372 2.76444 3.11249 3.20153 3.35175 3.46921 3.56472 3.58670 3.71712 3.83018 3.86610 3.98191 4.12471 4.21129 4.23394 4.33581 4.35557 4.38078 4.42540 4.47689 4.50812 4.54244 4.68977 4.75342 4.77411 4.85095 4.89356 4.91341 4.94993 5.01573 5.07414 5.13227 5.13307 5.26389 5.29363 5.34751 5.37724 5.38752 5.40039 5.47857 5.81652 6.04821 6.33354 6.43431 6.58272 7.11574 7.17024 7.54994 8.09472 8.70432 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008436 B = 0.003553 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3318.162017 B = 7878.813741 C =10351.738775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.102 4.102 4 C 0.527 3.473 5 O -0.582 6.582 6 N -0.720 5.720 7 C 0.090 3.910 8 C 0.122 3.878 9 H 0.110 0.890 10 N -0.656 5.656 11 C 0.069 3.931 12 C 0.441 3.559 13 O -0.616 6.616 14 N -0.575 5.575 15 C -0.332 4.332 16 H 0.082 0.918 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.270 1.270 23 C -0.163 4.163 24 C -0.154 4.154 25 C -0.167 4.167 26 C -0.118 4.118 27 C -0.128 4.128 28 C -0.132 4.132 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.407 0.593 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.344 0.656 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.393 0.607 41 H 0.277 0.723 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.109 0.891 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.791 -14.207 5.264 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.105 4.105 4 C 0.315 3.685 5 O -0.462 6.462 6 N -0.372 5.372 7 C -0.036 4.036 8 C 0.012 3.988 9 H 0.128 0.872 10 N -0.288 5.288 11 C -0.064 4.064 12 C 0.228 3.772 13 O -0.503 6.503 14 N -0.212 5.212 15 C -0.461 4.461 16 H 0.099 0.901 17 C -0.214 4.214 18 N -0.564 5.564 19 Si 0.816 3.184 20 H -0.196 1.196 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.182 4.182 24 C -0.192 4.192 25 C -0.204 4.204 26 C -0.156 4.156 27 C -0.166 4.166 28 C -0.170 4.170 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.243 0.757 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.164 0.836 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.226 0.774 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.080 0.920 48 H 0.103 0.897 49 H 0.127 0.873 50 H 0.088 0.912 51 H 0.113 0.887 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.713 -14.062 4.652 21.593 hybrid contribution 0.674 1.245 0.721 1.589 sum -15.039 -12.817 5.373 20.477 Atomic orbital electron populations 1.21753 0.95447 1.02511 1.01135 1.21327 0.96054 0.90761 1.04523 1.22314 0.98287 0.97787 0.92121 1.20958 0.79518 0.83066 0.84931 1.90661 1.36877 1.32021 1.86630 1.45942 1.42782 1.42379 1.06097 1.22016 0.99608 0.96903 0.85056 1.21444 0.85311 1.00603 0.91458 0.87169 1.60262 1.12229 1.07930 1.48372 1.21453 0.91003 0.92187 1.01728 1.20778 0.90978 0.83287 0.82120 1.90480 1.66498 1.36565 1.56717 1.41952 1.07335 1.07451 1.64443 1.19680 0.83228 0.94179 1.49042 0.90051 1.26062 1.04878 0.94086 0.96356 1.69687 1.37876 0.98665 1.50140 0.84927 0.76859 0.77997 0.78573 1.19631 1.19716 1.19476 1.22101 1.06479 0.99099 0.90570 1.23080 0.92545 1.02226 1.01311 1.22800 0.97411 1.03441 0.96770 1.22823 0.99107 0.99300 0.94322 1.22833 0.95671 1.02729 0.95320 1.22980 0.93273 1.02734 0.97978 0.90495 0.92783 0.94754 0.90170 0.88422 0.75663 0.93194 0.90494 0.83612 0.88222 0.93250 0.77372 0.91383 0.88364 0.87448 0.87719 0.89250 0.89029 0.92026 0.89721 0.87270 0.91214 0.88722 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.57 71.98 0.69 -1.58 16 2 C -0.09 -1.22 5.30 30.59 0.16 -1.06 16 3 C -0.10 -2.01 0.79 -52.40 -0.04 -2.05 16 4 C 0.53 13.85 5.85 87.66 0.51 14.36 16 5 O -0.58 -20.15 16.22 -3.04 -0.05 -20.20 16 6 N -0.72 -16.17 5.33 -463.06 -2.47 -18.63 16 7 C 0.09 2.07 4.71 86.38 0.41 2.48 16 8 C 0.12 2.60 2.89 44.91 0.13 2.73 16 9 H 0.11 1.95 7.95 -2.39 -0.02 1.94 16 10 N -0.66 -18.93 5.95 -495.56 -2.95 -21.88 16 11 C 0.07 2.39 5.47 85.56 0.47 2.86 16 12 C 0.44 20.96 7.83 87.66 0.69 21.64 16 13 O -0.62 -33.31 15.84 -3.06 -0.05 -33.36 16 14 N -0.57 -29.96 5.29 -306.99 -1.62 -31.58 16 15 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 16 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 17 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 18 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 19 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 C -0.16 -3.43 3.87 -10.79 -0.04 -3.47 16 24 C -0.15 -2.51 10.18 30.62 0.31 -2.20 16 25 C -0.17 -3.56 10.22 30.62 0.31 -3.25 16 26 C -0.12 -2.39 6.71 31.12 0.21 -2.19 16 27 C -0.13 -2.11 7.73 31.12 0.24 -1.87 16 28 C -0.13 -2.58 7.22 31.12 0.22 -2.36 16 29 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.05 0.87 6.92 -2.39 -0.02 0.85 16 31 H 0.03 0.64 7.62 -2.39 -0.02 0.62 16 32 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.10 0.97 7.30 -2.39 -0.02 0.95 16 34 H 0.41 7.78 7.14 -92.71 -0.66 7.11 16 35 H 0.05 1.40 6.77 -2.38 -0.02 1.38 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.34 9.94 7.01 -89.69 -0.63 9.31 16 38 H 0.10 3.29 6.68 -2.39 -0.02 3.28 16 39 H 0.05 1.69 6.60 -2.39 -0.02 1.68 16 40 H 0.39 19.90 7.90 -92.70 -0.73 19.17 16 41 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 42 H 0.10 2.19 7.73 -2.39 -0.02 2.17 16 43 H 0.11 1.45 8.08 -2.39 -0.02 1.43 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 47 H 0.06 1.60 7.77 -2.38 -0.02 1.58 16 48 H 0.08 1.48 7.01 -2.39 -0.02 1.47 16 49 H 0.11 1.25 7.60 -2.39 -0.02 1.23 16 50 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.09 1.52 8.10 -2.38 -0.02 1.50 16 52 H 0.06 1.51 8.09 -2.39 -0.02 1.49 16 Total: -1.00 -71.50 414.80 -0.35 -71.86 By element: Atomic # 1 Polarization: 54.48 SS G_CDS: -1.08 Total: 53.40 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.55 Total: 5.62 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -6.76 Total: -122.57 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -0.10 Total: -53.56 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.50 -0.35 -71.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713116400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.998 kcal (2) G-P(sol) polarization free energy of solvation -71.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds