Wall clock time and date at job start Sat Apr 11 2020 05:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46781 * 2 1 4 4 C 1.50704 * 109.46949 * 119.99485 * 2 1 3 5 5 O 1.21284 * 119.99626 * 120.00347 * 4 2 1 6 6 N 1.34771 * 120.00294 * 300.00394 * 4 2 1 7 7 C 1.46504 * 120.00321 * 180.02562 * 6 4 2 8 8 H 1.09005 * 110.75945 * 31.79992 * 7 6 4 9 9 C 1.55141 * 110.70352 * 268.60118 * 7 6 4 10 10 C 1.54905 * 101.65076 * 205.95975 * 9 7 6 11 11 N 1.47843 * 104.79740 * 37.07103 * 10 9 7 12 12 C 1.46900 * 111.00400 * 213.63845 * 11 10 9 13 13 C 1.50703 * 109.46620 * 290.84310 * 12 11 10 14 14 O 1.21293 * 120.00533 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99845 * 180.02562 * 13 12 11 16 16 C 1.37102 * 120.00023 * 179.72580 * 15 13 12 17 17 H 1.08002 * 119.99683 * 0.26443 * 16 15 13 18 18 C 1.38948 * 119.99709 * 180.27115 * 16 15 13 19 19 N 1.31411 * 120.00367 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99408 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47219 * 90.00338 * 20 18 16 22 22 H 1.48505 * 109.46985 * 209.99864 * 20 18 16 23 23 H 1.48494 * 109.47402 * 329.99751 * 20 18 16 24 24 C 1.47451 * 108.56626 * 335.90162 * 11 10 9 25 25 C 1.52994 * 109.47540 * 239.99943 * 2 1 3 26 26 C 1.53784 * 113.61589 * 162.07278 * 25 2 1 27 27 C 1.53785 * 87.08175 * 220.01688 * 26 25 2 28 28 C 1.53782 * 87.07889 * 25.43513 * 27 26 25 29 29 H 1.09000 * 109.47100 * 300.00233 * 1 2 3 30 30 H 1.08997 * 109.46726 * 60.00097 * 1 2 3 31 31 H 1.09000 * 109.46486 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46661 * 173.46878 * 3 2 1 33 33 H 1.08993 * 109.46994 * 293.46862 * 3 2 1 34 34 H 1.09001 * 109.47052 * 53.47632 * 3 2 1 35 35 H 0.97007 * 119.99856 * 359.97438 * 6 4 2 36 36 H 1.08994 * 110.98931 * 324.05204 * 9 7 6 37 37 H 1.09001 * 110.99169 * 87.87077 * 9 7 6 38 38 H 1.09000 * 110.37386 * 278.24464 * 10 9 7 39 39 H 1.08997 * 110.37373 * 155.89660 * 10 9 7 40 40 H 1.08998 * 109.47524 * 170.84260 * 12 11 10 41 41 H 1.08997 * 109.47320 * 50.83502 * 12 11 10 42 42 H 0.97003 * 120.00175 * 359.97438 * 15 13 12 43 43 H 0.97003 * 119.99964 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.88745 * 120.39517 * 24 11 10 45 45 H 1.08997 * 109.88958 * 241.42047 * 24 11 10 46 46 H 1.09003 * 112.84808 * 293.37453 * 25 2 1 47 47 H 1.08994 * 113.61347 * 334.56864 * 26 25 2 48 48 H 1.09007 * 113.61567 * 105.46906 * 26 25 2 49 49 H 1.08998 * 113.61362 * 270.88313 * 27 26 25 50 50 H 1.08994 * 113.68657 * 139.99101 * 27 26 25 51 51 H 1.09005 * 113.61463 * 220.02291 * 28 27 26 52 52 H 1.08991 * 113.62098 * 89.11337 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9401 3.6509 8 1 3.1713 -1.3892 3.4662 9 6 1.1775 -2.0130 4.1195 10 6 1.4971 -2.1079 5.6322 11 7 1.8097 -0.7215 6.0398 12 6 2.8337 -0.7005 7.0929 13 6 2.2540 -1.2561 8.3682 14 8 1.1012 -1.6321 8.3972 15 7 3.0164 -1.3342 9.4769 16 6 2.4874 -1.8345 10.6387 17 1 1.4611 -2.1699 10.6642 18 6 3.2717 -1.9098 11.7832 19 7 4.5203 -1.5010 11.7522 20 14 2.5507 -2.5907 13.3662 21 1 2.7709 -4.0583 13.4193 22 1 3.2145 -1.9482 14.5290 23 1 1.0938 -2.3068 13.4089 24 6 2.2585 0.0273 4.8515 25 6 2.0401 -0.7212 -1.2492 26 6 3.5094 -0.4125 -1.5819 27 6 3.0847 -0.3736 -3.0594 28 6 1.6752 -0.0103 -2.5631 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1237 1.4448 0.1169 33 1 1.7752 1.9215 -0.9426 34 1 1.5844 1.9890 0.8258 35 1 1.1492 0.5391 2.5436 36 1 0.1535 -1.6769 3.9570 37 1 1.3577 -2.9659 3.6218 38 1 2.3580 -2.7554 5.7983 39 1 0.6310 -2.4784 6.1805 40 1 3.1623 0.3253 7.2597 41 1 3.6840 -1.3090 6.7850 42 1 3.9382 -1.0332 9.4539 43 1 5.0679 -1.5540 12.5512 44 1 1.5986 0.8773 4.6779 45 1 3.2810 0.3756 4.9970 46 1 1.8055 -1.7857 -1.2487 47 1 3.8507 0.5496 -1.2002 48 1 4.1916 -1.2291 -1.3451 49 1 3.1369 -1.3433 -3.5545 50 1 3.5640 0.4204 -3.6320 51 1 0.8765 -0.5023 -3.1183 52 1 1.5150 1.0617 -2.4495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713973993.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:08:44 Heat of formation + Delta-G solvation = -51.453498 kcal Electronic energy + Delta-G solvation = -29618.401746 eV Core-core repulsion = 25618.238437 eV Total energy + Delta-G solvation = -4000.163309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.01989 -39.45783 -38.43469 -37.39395 -34.81108 -34.12680 -33.67455 -31.31236 -30.69830 -28.48893 -27.97017 -26.53970 -26.10625 -25.59032 -24.24905 -23.23777 -21.15913 -20.94572 -20.30164 -19.19476 -18.76442 -17.86179 -17.26351 -16.82408 -15.99314 -15.72067 -15.50642 -15.35316 -15.05143 -14.66775 -14.44447 -14.36564 -13.82157 -13.77703 -13.44223 -13.27321 -13.13178 -12.97051 -12.87242 -12.60136 -12.36924 -12.22919 -12.01312 -11.91275 -11.74192 -11.68267 -11.51097 -11.50656 -11.45772 -11.11094 -10.95927 -10.73678 -10.68906 -10.60077 -10.38524 -10.37814 -10.20087 -9.73267 -9.47989 -9.15909 -8.44933 -7.96169 -7.88821 -6.39743 -3.80428 2.49617 2.93435 3.19087 3.27549 3.33540 3.92903 4.01718 4.15723 4.23625 4.26108 4.29779 4.51819 4.52650 4.60386 4.67516 4.79163 4.86543 4.91587 4.97785 5.13416 5.18211 5.26775 5.29378 5.34832 5.37226 5.38951 5.41848 5.46362 5.53658 5.57507 5.61752 5.62606 5.71654 5.74304 5.77263 5.82120 5.87186 5.90589 5.98009 5.99041 6.13826 6.23780 6.30207 6.37940 6.48841 7.20811 7.21234 7.35122 7.56994 8.08265 8.08297 8.64151 9.20341 9.56789 10.08827 10.78109 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036667 B = 0.001799 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.436763 B =15564.496245 C =15747.260986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.146 4.146 4 C 0.524 3.476 5 O -0.536 6.536 6 N -0.718 5.718 7 C 0.123 3.877 8 H 0.096 0.904 9 C -0.139 4.139 10 C 0.054 3.946 11 N -0.501 5.501 12 C 0.039 3.961 13 C 0.445 3.555 14 O -0.577 6.577 15 N -0.566 5.566 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.903 5.903 20 Si 0.930 3.070 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.037 3.963 25 C -0.083 4.083 26 C -0.137 4.137 27 C -0.143 4.143 28 C -0.138 4.138 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.400 0.600 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.065 0.935 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 7.005 -27.928 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.203 4.203 4 C 0.310 3.690 5 O -0.412 6.412 6 N -0.369 5.369 7 C 0.017 3.983 8 H 0.114 0.886 9 C -0.178 4.178 10 C -0.074 4.074 11 N -0.225 5.225 12 C -0.093 4.093 13 C 0.230 3.770 14 O -0.461 6.461 15 N -0.203 5.203 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.092 4.092 25 C -0.102 4.102 26 C -0.174 4.174 27 C -0.180 4.180 28 C -0.176 4.176 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.235 0.765 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.084 0.916 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.663 6.274 -27.597 28.537 hybrid contribution 0.851 -0.129 0.703 1.112 sum -2.811 6.145 -26.893 27.730 Atomic orbital electron populations 1.21830 0.92388 1.02798 1.02704 1.20735 0.97142 0.96427 0.93252 1.22022 1.01789 0.93604 1.02906 1.20552 0.79764 0.84319 0.84365 1.90695 1.37626 1.26152 1.86714 1.45995 1.53661 1.31962 1.05302 1.22255 0.98616 0.93335 0.84128 0.88637 1.23137 0.99598 0.99018 0.96052 1.23010 1.02058 0.89032 0.93288 1.63289 1.39622 1.13167 1.06466 1.22145 0.92797 1.01718 0.92592 1.19710 0.87383 0.85167 0.84727 1.90507 1.17746 1.53036 1.84776 1.41862 1.13494 1.56058 1.08889 1.19693 0.98770 1.37748 0.86509 0.87936 1.25255 0.95404 0.97722 0.99628 1.69613 1.06898 1.47496 1.30416 0.85861 0.79108 0.78755 0.80578 1.20461 1.20952 1.19431 1.23077 1.00223 0.96983 0.88878 1.22353 0.96508 0.99794 0.91533 1.23015 0.96525 1.02286 0.95595 1.22792 0.96864 1.01653 0.96741 1.23057 0.97258 1.00787 0.96454 0.92048 0.91272 0.92021 0.91698 0.90997 0.92010 0.76513 0.90459 0.90696 0.93724 0.88489 0.89334 0.93206 0.77532 0.91919 0.90246 0.92051 0.88689 0.89878 0.91267 0.90361 0.91624 0.91586 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.22 37.16 0.31 -0.54 16 2 C -0.07 -0.54 0.53 -155.66 -0.08 -0.62 16 3 C -0.15 -0.84 7.36 37.16 0.27 -0.56 16 4 C 0.52 5.56 6.42 -10.99 -0.07 5.49 16 5 O -0.54 -7.81 15.42 5.55 0.09 -7.72 16 6 N -0.72 -6.78 4.97 -52.04 -0.26 -7.04 16 7 C 0.12 1.44 3.31 -66.11 -0.22 1.22 16 8 H 0.10 1.27 7.55 -51.93 -0.39 0.88 16 9 C -0.14 -1.79 6.76 -24.59 -0.17 -1.96 16 10 C 0.05 0.87 5.74 -2.30 -0.01 0.85 16 11 N -0.50 -8.21 4.86 -232.69 -1.13 -9.35 16 12 C 0.04 0.70 5.05 -4.97 -0.03 0.67 16 13 C 0.44 10.54 7.58 -10.98 -0.08 10.46 16 14 O -0.58 -15.60 14.61 5.55 0.08 -15.51 16 15 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 16 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 17 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 20 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 C 0.04 0.45 6.62 -2.83 -0.02 0.44 16 25 C -0.08 -0.66 2.43 -89.81 -0.22 -0.88 16 26 C -0.14 -1.11 7.10 -25.92 -0.18 -1.29 16 27 C -0.14 -0.92 8.08 -25.92 -0.21 -1.13 16 28 C -0.14 -0.82 6.70 -25.92 -0.17 -1.00 16 29 H 0.06 0.32 7.56 -51.93 -0.39 -0.07 16 30 H 0.07 0.33 7.59 -51.93 -0.39 -0.06 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 6.45 -51.93 -0.33 0.09 16 33 H 0.07 0.33 6.01 -51.93 -0.31 0.02 16 34 H 0.06 0.29 7.75 -51.93 -0.40 -0.11 16 35 H 0.40 2.85 7.33 -40.82 -0.30 2.55 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.74 7.62 -51.93 -0.40 0.34 16 39 H 0.10 1.81 7.38 -51.93 -0.38 1.43 16 40 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 41 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 42 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.08 0.86 7.72 -51.93 -0.40 0.46 16 45 H 0.06 0.70 7.55 -51.93 -0.39 0.31 16 46 H 0.09 0.92 8.00 -51.93 -0.42 0.50 16 47 H 0.08 0.62 5.71 -51.93 -0.30 0.33 16 48 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 52 H 0.08 0.42 6.04 -51.93 -0.31 0.11 16 LS Contribution 402.66 15.07 6.07 6.07 Total: -1.00 -32.82 402.66 -9.38 -42.20 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -8.74 Total: 10.49 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.12 Total: 3.14 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.72 Total: -54.83 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.17 Total: -23.23 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.82 -9.38 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713973993.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.250 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds