Wall clock time and date at job start Sat Apr 11 2020 05:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46781 * 2 1 4 4 C 1.50704 * 109.46949 * 119.99485 * 2 1 3 5 5 O 1.21284 * 119.99626 * 120.00347 * 4 2 1 6 6 N 1.34771 * 120.00294 * 300.00394 * 4 2 1 7 7 C 1.46504 * 120.00321 * 180.02562 * 6 4 2 8 8 H 1.09005 * 110.75945 * 31.79992 * 7 6 4 9 9 C 1.55141 * 110.70352 * 268.60118 * 7 6 4 10 10 C 1.54905 * 101.65076 * 205.95975 * 9 7 6 11 11 N 1.47843 * 104.79740 * 37.07103 * 10 9 7 12 12 C 1.46900 * 111.00400 * 213.63845 * 11 10 9 13 13 C 1.50703 * 109.46620 * 290.84310 * 12 11 10 14 14 O 1.21293 * 120.00533 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99845 * 180.02562 * 13 12 11 16 16 C 1.37102 * 120.00023 * 179.72580 * 15 13 12 17 17 H 1.08002 * 119.99683 * 0.26443 * 16 15 13 18 18 C 1.38948 * 119.99709 * 180.27115 * 16 15 13 19 19 N 1.31411 * 120.00367 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99408 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47219 * 90.00338 * 20 18 16 22 22 H 1.48505 * 109.46985 * 209.99864 * 20 18 16 23 23 H 1.48494 * 109.47402 * 329.99751 * 20 18 16 24 24 C 1.47451 * 108.56626 * 335.90162 * 11 10 9 25 25 C 1.52994 * 109.47540 * 239.99943 * 2 1 3 26 26 C 1.53784 * 113.61589 * 162.07278 * 25 2 1 27 27 C 1.53785 * 87.08175 * 220.01688 * 26 25 2 28 28 C 1.53782 * 87.07889 * 25.43513 * 27 26 25 29 29 H 1.09000 * 109.47100 * 300.00233 * 1 2 3 30 30 H 1.08997 * 109.46726 * 60.00097 * 1 2 3 31 31 H 1.09000 * 109.46486 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46661 * 173.46878 * 3 2 1 33 33 H 1.08993 * 109.46994 * 293.46862 * 3 2 1 34 34 H 1.09001 * 109.47052 * 53.47632 * 3 2 1 35 35 H 0.97007 * 119.99856 * 359.97438 * 6 4 2 36 36 H 1.08994 * 110.98931 * 324.05204 * 9 7 6 37 37 H 1.09001 * 110.99169 * 87.87077 * 9 7 6 38 38 H 1.09000 * 110.37386 * 278.24464 * 10 9 7 39 39 H 1.08997 * 110.37373 * 155.89660 * 10 9 7 40 40 H 1.08998 * 109.47524 * 170.84260 * 12 11 10 41 41 H 1.08997 * 109.47320 * 50.83502 * 12 11 10 42 42 H 0.97003 * 120.00175 * 359.97438 * 15 13 12 43 43 H 0.97003 * 119.99964 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.88745 * 120.39517 * 24 11 10 45 45 H 1.08997 * 109.88958 * 241.42047 * 24 11 10 46 46 H 1.09003 * 112.84808 * 293.37453 * 25 2 1 47 47 H 1.08994 * 113.61347 * 334.56864 * 26 25 2 48 48 H 1.09007 * 113.61567 * 105.46906 * 26 25 2 49 49 H 1.08998 * 113.61362 * 270.88313 * 27 26 25 50 50 H 1.08994 * 113.68657 * 139.99101 * 27 26 25 51 51 H 1.09005 * 113.61463 * 220.02291 * 28 27 26 52 52 H 1.08991 * 113.62098 * 89.11337 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9401 3.6509 8 1 3.1713 -1.3892 3.4662 9 6 1.1775 -2.0130 4.1195 10 6 1.4971 -2.1079 5.6322 11 7 1.8097 -0.7215 6.0398 12 6 2.8337 -0.7005 7.0929 13 6 2.2540 -1.2561 8.3682 14 8 1.1012 -1.6321 8.3972 15 7 3.0164 -1.3342 9.4769 16 6 2.4874 -1.8345 10.6387 17 1 1.4611 -2.1699 10.6642 18 6 3.2717 -1.9098 11.7832 19 7 4.5203 -1.5010 11.7522 20 14 2.5507 -2.5907 13.3662 21 1 2.7709 -4.0583 13.4193 22 1 3.2145 -1.9482 14.5290 23 1 1.0938 -2.3068 13.4089 24 6 2.2585 0.0273 4.8515 25 6 2.0401 -0.7212 -1.2492 26 6 3.5094 -0.4125 -1.5819 27 6 3.0847 -0.3736 -3.0594 28 6 1.6752 -0.0103 -2.5631 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1237 1.4448 0.1169 33 1 1.7752 1.9215 -0.9426 34 1 1.5844 1.9890 0.8258 35 1 1.1492 0.5391 2.5436 36 1 0.1535 -1.6769 3.9570 37 1 1.3577 -2.9659 3.6218 38 1 2.3580 -2.7554 5.7983 39 1 0.6310 -2.4784 6.1805 40 1 3.1623 0.3253 7.2597 41 1 3.6840 -1.3090 6.7850 42 1 3.9382 -1.0332 9.4539 43 1 5.0679 -1.5540 12.5512 44 1 1.5986 0.8773 4.6779 45 1 3.2810 0.3756 4.9970 46 1 1.8055 -1.7857 -1.2487 47 1 3.8507 0.5496 -1.2002 48 1 4.1916 -1.2291 -1.3451 49 1 3.1369 -1.3433 -3.5545 50 1 3.5640 0.4204 -3.6320 51 1 0.8765 -0.5023 -3.1183 52 1 1.5150 1.0617 -2.4495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713973993.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:08:43 Heat of formation + Delta-G solvation = -74.765830 kcal Electronic energy + Delta-G solvation = -29619.412645 eV Core-core repulsion = 25618.238437 eV Total energy + Delta-G solvation = -4001.174208 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.77185 -40.68076 -39.65697 -38.74328 -36.01724 -35.59379 -34.72033 -33.28733 -31.98614 -29.61209 -28.42289 -28.09635 -26.65411 -26.16117 -26.00554 -24.03856 -22.42403 -21.93706 -21.05571 -20.99968 -19.88570 -19.40102 -18.02429 -17.92779 -17.46115 -16.88148 -16.55436 -16.29032 -16.13399 -15.98173 -15.80942 -15.57809 -15.35695 -14.88545 -14.47303 -14.36936 -14.04493 -13.84440 -13.74574 -13.63582 -13.44207 -13.30949 -13.08382 -13.00403 -12.77888 -12.71791 -12.67833 -12.51082 -12.41327 -12.27617 -12.25077 -12.12172 -12.02454 -11.88725 -11.48660 -11.24794 -11.23580 -10.92743 -10.54731 -10.33700 -10.05775 -10.00191 -9.27249 -8.46142 -5.94672 1.37816 1.41352 1.54176 1.66930 2.06141 2.09971 2.29594 2.81248 3.20437 3.32093 3.51602 3.59771 3.67526 3.72688 3.73681 3.96811 4.01253 4.03302 4.15833 4.24097 4.26436 4.33162 4.33313 4.38742 4.42654 4.51185 4.65231 4.71398 4.80753 4.82406 4.86200 4.87483 4.89500 4.98960 4.99600 5.03076 5.07865 5.10157 5.13971 5.19630 5.30468 5.36193 5.41270 5.45116 5.50678 5.68810 5.83336 5.96849 6.09015 6.57659 6.61439 7.13690 7.28504 7.57223 8.13251 8.71325 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036667 B = 0.001799 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.436763 B =15564.496245 C =15747.260986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.145 4.145 4 C 0.520 3.480 5 O -0.581 6.581 6 N -0.705 5.705 7 C 0.133 3.867 8 H 0.080 0.920 9 C -0.127 4.127 10 C 0.055 3.945 11 N -0.519 5.519 12 C 0.051 3.949 13 C 0.441 3.559 14 O -0.615 6.615 15 N -0.576 5.576 16 C -0.332 4.332 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.993 3.007 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.273 1.273 24 C 0.042 3.958 25 C -0.091 4.091 26 C -0.143 4.143 27 C -0.141 4.141 28 C -0.124 4.124 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.415 0.585 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.064 0.936 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.041 0.959 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.072 0.928 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 9.271 -29.183 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.202 4.202 4 C 0.308 3.692 5 O -0.460 6.460 6 N -0.357 5.357 7 C 0.026 3.974 8 H 0.098 0.902 9 C -0.166 4.166 10 C -0.073 4.073 11 N -0.243 5.243 12 C -0.080 4.080 13 C 0.229 3.771 14 O -0.501 6.501 15 N -0.213 5.213 16 C -0.461 4.461 17 H 0.096 0.904 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.817 3.183 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.085 4.085 25 C -0.109 4.109 26 C -0.181 4.181 27 C -0.178 4.178 28 C -0.161 4.161 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.253 0.747 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.085 0.915 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.110 0.890 48 H 0.060 0.940 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.091 0.909 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.999 8.581 -28.872 30.385 hybrid contribution 0.958 -0.864 1.057 1.668 sum -3.041 7.717 -27.815 29.025 Atomic orbital electron populations 1.21856 0.91003 1.02398 1.04309 1.20745 0.98070 0.97051 0.90984 1.22052 1.01253 0.92201 1.04655 1.21235 0.78837 0.83760 0.85371 1.90683 1.39727 1.28287 1.87340 1.45849 1.53423 1.32091 1.04325 1.21966 0.97482 0.92975 0.84940 0.90152 1.23016 1.00437 0.99520 0.93631 1.22853 1.00303 0.89115 0.95017 1.63219 1.39794 1.13338 1.07973 1.22026 0.93079 1.02915 0.90028 1.20769 0.86794 0.83619 0.85962 1.90482 1.19597 1.54310 1.85693 1.41934 1.13820 1.56574 1.09016 1.19652 0.98312 1.39815 0.88347 0.90354 1.26032 0.95709 0.97445 1.02174 1.69674 1.07558 1.47502 1.31484 0.84931 0.78151 0.78334 0.76932 1.19772 1.19491 1.19774 1.23136 1.01696 0.96796 0.86918 1.22337 0.96614 0.98819 0.93178 1.23061 0.96178 1.01647 0.97180 1.22788 0.97392 1.01958 0.95665 1.23026 0.96929 1.01588 0.94594 0.90799 0.89336 0.93455 0.92633 0.89150 0.90409 0.74706 0.89638 0.91118 0.94745 0.91778 0.86713 0.91534 0.77059 0.91348 0.87962 0.90454 0.91290 0.89034 0.94029 0.90838 0.90342 0.90946 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.22 71.98 0.59 -0.74 16 2 C -0.07 -0.85 0.53 -52.93 -0.03 -0.88 16 3 C -0.14 -1.20 7.36 71.98 0.53 -0.67 16 4 C 0.52 10.57 6.42 87.66 0.56 11.13 16 5 O -0.58 -17.29 15.42 -3.04 -0.05 -17.34 16 6 N -0.70 -11.96 4.97 -436.94 -2.17 -14.13 16 7 C 0.13 2.95 3.31 46.17 0.15 3.10 16 8 H 0.08 2.09 7.55 -2.38 -0.02 2.08 16 9 C -0.13 -3.24 6.76 31.98 0.22 -3.02 16 10 C 0.06 1.81 5.74 86.77 0.50 2.31 16 11 N -0.52 -16.50 4.86 -890.11 -4.33 -20.83 16 12 C 0.05 1.77 5.05 85.56 0.43 2.20 16 13 C 0.44 21.24 7.58 87.66 0.66 21.91 16 14 O -0.62 -34.32 14.61 -3.07 -0.04 -34.37 16 15 N -0.58 -29.88 5.29 -306.97 -1.62 -31.51 16 16 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 17 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 19 N -0.92 -50.13 13.05 21.66 0.28 -49.84 16 20 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C 0.04 0.93 6.62 86.64 0.57 1.50 16 25 C -0.09 -1.37 2.43 -10.27 -0.02 -1.40 16 26 C -0.14 -2.28 7.10 31.12 0.22 -2.06 16 27 C -0.14 -1.64 8.08 31.12 0.25 -1.39 16 28 C -0.12 -1.19 6.70 31.12 0.21 -0.98 16 29 H 0.07 0.53 7.56 -2.39 -0.02 0.51 16 30 H 0.09 0.54 7.59 -2.39 -0.02 0.52 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.59 6.45 -2.39 -0.02 0.58 16 33 H 0.09 0.45 6.01 -2.39 -0.01 0.43 16 34 H 0.08 0.41 7.75 -2.39 -0.02 0.40 16 35 H 0.42 4.58 7.33 -92.70 -0.68 3.90 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.03 1.18 7.62 -2.39 -0.02 1.16 16 39 H 0.06 2.52 7.38 -2.39 -0.02 2.50 16 40 H 0.11 3.40 8.03 -2.39 -0.02 3.38 16 41 H 0.07 2.11 7.85 -2.39 -0.02 2.09 16 42 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 43 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.10 1.82 7.72 -2.39 -0.02 1.80 16 45 H 0.08 1.50 7.55 -2.39 -0.02 1.49 16 46 H 0.07 1.40 8.00 -2.39 -0.02 1.38 16 47 H 0.09 1.27 5.71 -2.39 -0.01 1.26 16 48 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 49 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 52 H 0.10 0.62 6.04 -2.39 -0.01 0.61 16 Total: -1.00 -73.96 402.66 -0.25 -74.21 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.48 Total: 35.87 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 6.13 Total: 12.51 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -7.84 Total: -116.31 kcal Atomic # 8 Polarization: -51.61 SS G_CDS: -0.09 Total: -51.70 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -73.96 -0.25 -74.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713973993.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.557 kcal (2) G-P(sol) polarization free energy of solvation -73.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds