Wall clock time and date at job start Sat Apr 11 2020 05:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 110.37313 * 2 1 4 4 C 1.54380 * 110.32066 * 237.82095 * 2 1 3 5 5 N 1.48559 * 104.59665 * 264.96026 * 4 2 1 6 6 C 1.46908 * 110.99826 * 200.95967 * 5 4 2 7 7 C 1.50709 * 109.46851 * 189.99877 * 6 5 4 8 8 O 1.21287 * 119.99801 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99878 * 180.02562 * 7 6 5 10 10 C 1.37101 * 120.00146 * 179.97438 * 9 7 6 11 11 H 1.08007 * 119.99465 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00310 * 180.02562 * 10 9 7 13 13 N 1.31406 * 120.00027 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99805 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47225 * 89.99794 * 14 12 10 16 16 H 1.48498 * 109.46746 * 210.00209 * 14 12 10 17 17 H 1.48506 * 109.47158 * 330.00199 * 14 12 10 18 18 C 1.48561 * 104.21990 * 320.51451 * 5 4 2 19 19 C 1.54259 * 110.32450 * 122.18929 * 2 1 3 20 20 H 1.09002 * 110.32223 * 237.78797 * 19 2 1 21 21 N 1.46502 * 110.32097 * 359.89060 * 19 2 1 22 22 C 1.34775 * 120.00001 * 203.56879 * 21 19 2 23 23 O 1.21280 * 120.00200 * 0.02562 * 22 21 19 24 24 C 1.50698 * 119.99940 * 180.02562 * 22 21 19 25 25 C 1.53010 * 109.47100 * 180.02562 * 24 22 21 26 26 C 1.52995 * 109.47153 * 180.02562 * 25 24 22 27 27 C 1.52998 * 117.50015 * 243.74631 * 26 25 24 28 28 C 1.53000 * 117.49820 * 175.08612 * 26 25 24 29 29 H 1.08999 * 109.46458 * 297.82097 * 1 2 3 30 30 H 1.09005 * 109.46905 * 57.81050 * 1 2 3 31 31 H 1.08998 * 109.47452 * 177.81313 * 1 2 3 32 32 H 1.09002 * 109.47426 * 182.17887 * 3 2 1 33 33 H 1.08997 * 109.47602 * 302.18884 * 3 2 1 34 34 H 1.08999 * 109.46771 * 62.18636 * 3 2 1 35 35 H 1.09005 * 110.41464 * 23.74264 * 4 2 1 36 36 H 1.09001 * 110.41347 * 146.06372 * 4 2 1 37 37 H 1.08995 * 109.46904 * 309.99962 * 6 5 4 38 38 H 1.08995 * 109.46981 * 70.00143 * 6 5 4 39 39 H 0.97004 * 119.99917 * 0.02562 * 9 7 6 40 40 H 0.97005 * 119.99983 * 179.97438 * 13 12 10 41 41 H 1.08990 * 110.41371 * 280.70218 * 18 5 4 42 42 H 1.09004 * 110.40913 * 158.26121 * 18 5 4 43 43 H 0.96998 * 119.99803 * 23.58247 * 21 19 2 44 44 H 1.08998 * 109.47536 * 300.00234 * 24 22 21 45 45 H 1.08999 * 109.47351 * 60.01003 * 24 22 21 46 46 H 1.08998 * 109.46938 * 300.00597 * 25 24 22 47 47 H 1.08999 * 109.46719 * 59.99979 * 25 24 22 48 48 H 1.09002 * 115.55011 * 29.42000 * 26 25 24 49 49 H 1.09001 * 117.49969 * 0.02562 * 27 26 25 50 50 H 1.09006 * 117.49484 * 145.02290 * 27 26 25 51 51 H 1.08998 * 117.49881 * 214.98320 * 28 26 25 52 52 H 1.08998 * 117.49650 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3146 -2.1467 -0.7227 6 6 3.2647 -2.8595 -1.5872 7 6 3.3055 -4.3144 -1.1964 8 8 2.6110 -4.7179 -0.2876 9 7 4.1136 -5.1671 -1.8568 10 6 4.1511 -6.4906 -1.5010 11 1 3.5327 -6.8499 -0.6917 12 6 4.9847 -7.3697 -2.1815 13 7 5.0210 -8.6381 -1.8401 14 14 6.0548 -6.7480 -3.5808 15 1 7.3680 -6.3103 -3.0430 16 1 6.2624 -7.8385 -4.5672 17 1 5.3846 -5.6010 -4.2446 18 6 2.8806 -1.9423 0.6356 19 6 2.0658 -0.7706 1.2242 20 1 2.7082 -0.1270 1.8252 21 7 0.9542 -1.2767 2.0332 22 6 1.1406 -1.5475 3.3403 23 8 2.2284 -1.3716 3.8469 24 6 -0.0027 -2.0686 4.1723 25 6 0.4724 -2.2910 5.6097 26 6 -0.6881 -2.8207 6.4542 27 6 -1.1816 -1.9432 7.6063 28 6 -0.3858 -3.2172 7.9007 29 1 -0.3632 0.4796 0.9089 30 1 -0.3633 0.5475 -0.8698 31 1 -0.3634 -1.0269 -0.0392 32 1 3.1518 1.4174 -0.0391 33 1 1.6760 1.9655 -0.8697 34 1 1.7396 1.9418 0.9089 35 1 1.3212 -0.7857 -2.0210 36 1 2.9929 -0.3214 -1.5817 37 1 2.9474 -2.7710 -2.6262 38 1 4.2574 -2.4244 -1.4721 39 1 4.6693 -4.8443 -2.5834 40 1 5.6027 -9.2519 -2.3155 41 1 3.9358 -1.6773 0.5717 42 1 2.7488 -2.8390 1.2412 43 1 0.0841 -1.4172 1.6281 44 1 -0.8162 -1.3432 4.1670 45 1 -0.3546 -3.0124 3.7557 46 1 1.2861 -3.0162 5.6153 47 1 0.8241 -1.3471 6.0261 48 1 -1.4310 -3.4093 5.9159 49 1 -0.6798 -0.9882 7.7623 50 1 -2.2493 -1.9547 7.8260 51 1 -0.9301 -4.0663 8.3141 52 1 0.6400 -3.1010 8.2504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734143874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:06:36 Heat of formation + Delta-G solvation = -42.680136 kcal Electronic energy + Delta-G solvation = -29885.352754 eV Core-core repulsion = 25885.569886 eV Total energy + Delta-G solvation = -3999.782868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.54296 -39.04043 -38.06614 -37.53393 -34.74109 -33.83691 -33.29114 -32.29629 -31.63234 -29.27353 -27.75038 -27.36531 -25.36378 -24.84982 -23.41487 -22.57438 -21.48901 -20.55260 -20.06120 -19.52089 -19.10807 -18.17346 -17.11467 -16.60929 -15.90075 -15.70765 -15.61810 -15.21946 -15.05543 -14.77000 -14.52049 -14.01752 -13.78499 -13.61026 -13.55715 -13.41212 -13.18749 -12.86223 -12.63789 -12.52734 -12.36155 -12.20295 -11.95340 -11.92654 -11.77668 -11.58965 -11.51792 -11.35445 -11.31404 -11.09330 -10.99471 -10.87424 -10.75711 -10.57852 -10.50057 -10.06030 -9.95100 -9.70551 -9.52698 -8.94407 -8.60930 -8.15841 -8.08433 -6.28265 -3.79379 2.73105 3.03771 3.08124 3.16138 3.21350 3.60628 3.77895 3.98236 4.12518 4.26570 4.45743 4.52570 4.65638 4.70044 4.74472 4.81034 4.88516 5.06811 5.12224 5.14708 5.20704 5.23083 5.35429 5.37969 5.42358 5.43761 5.47178 5.50893 5.54580 5.59738 5.68035 5.70807 5.71556 5.76657 5.81774 5.84812 5.89800 5.90099 5.95939 5.97982 6.01139 6.12676 6.22368 6.33325 6.59849 7.02122 7.08790 7.58076 7.61457 8.17533 8.31607 8.63675 8.98638 9.45718 9.87591 10.85077 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.002823 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.235067 B = 9916.647334 C =12272.912176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 C -0.138 4.138 4 C 0.036 3.964 5 N -0.481 5.481 6 C 0.031 3.969 7 C 0.455 3.545 8 O -0.557 6.557 9 N -0.594 5.594 10 C -0.302 4.302 11 H 0.119 0.881 12 C 0.040 3.960 13 N -0.883 5.883 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.027 3.973 19 C 0.151 3.849 20 H 0.094 0.906 21 N -0.716 5.716 22 C 0.512 3.488 23 O -0.545 6.545 24 C -0.138 4.138 25 C -0.073 4.073 26 C -0.153 4.153 27 C -0.183 4.183 28 C -0.181 4.181 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.045 0.955 42 H 0.101 0.899 43 H 0.404 0.596 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.093 0.907 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 21.034 7.122 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.092 4.092 5 N -0.205 5.205 6 C -0.101 4.101 7 C 0.240 3.760 8 O -0.438 6.438 9 N -0.234 5.234 10 C -0.431 4.431 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.523 5.523 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.101 4.101 19 C 0.045 3.955 20 H 0.112 0.888 21 N -0.370 5.370 22 C 0.299 3.701 23 O -0.423 6.423 24 C -0.178 4.178 25 C -0.111 4.111 26 C -0.171 4.171 27 C -0.220 4.220 28 C -0.218 4.218 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.202 0.798 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.119 0.881 43 H 0.242 0.758 44 H 0.109 0.891 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.124 0.876 49 H 0.111 0.889 50 H 0.109 0.891 51 H 0.111 0.889 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.929 20.322 8.079 24.448 hybrid contribution 1.362 0.544 -1.601 2.171 sum -9.566 20.866 6.478 23.851 Atomic orbital electron populations 1.21810 0.93632 1.02435 1.01870 1.21534 0.96691 0.95049 0.94281 1.21876 1.01012 0.94560 1.02090 1.23317 1.00054 0.89099 0.96738 1.65138 1.40850 1.12844 1.01659 1.22100 0.94935 0.94926 0.98139 1.19603 0.83919 0.86599 0.85857 1.90551 1.43903 1.78014 1.31288 1.42209 1.39318 1.09365 1.32497 1.19415 1.24198 0.81386 1.18102 0.86337 1.25027 0.97805 0.95227 0.98161 1.69621 1.38804 1.02640 1.41260 0.86680 0.81292 0.78958 0.82496 1.19696 1.20200 1.19532 1.23605 0.95799 0.99531 0.91202 1.21720 0.88321 0.94403 0.91043 0.88840 1.46226 1.14486 1.66902 1.09341 1.20730 0.90042 0.77060 0.82262 1.90692 1.26773 1.52518 1.72280 1.21650 0.97173 1.03085 0.95863 1.20909 0.96244 1.01882 0.92059 1.22370 1.00890 1.03437 0.90413 1.23055 1.00076 0.95308 1.03592 1.22971 1.01447 0.98696 0.98698 0.92312 0.92084 0.91337 0.92374 0.92078 0.92294 0.89791 0.93654 0.89214 0.93041 0.79814 0.91669 0.93664 0.88092 0.75845 0.89083 0.88533 0.90585 0.91207 0.87645 0.88863 0.89053 0.88867 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 7.09 37.16 0.26 -0.89 16 2 C -0.07 -0.73 1.03 -153.13 -0.16 -0.89 16 3 C -0.14 -1.10 8.25 37.16 0.31 -0.80 16 4 C 0.04 0.41 5.55 -2.18 -0.01 0.40 16 5 N -0.48 -7.51 4.98 -231.40 -1.15 -8.66 16 6 C 0.03 0.52 5.32 -4.97 -0.03 0.50 16 7 C 0.45 10.48 7.63 -10.98 -0.08 10.40 16 8 O -0.56 -15.06 14.80 5.55 0.08 -14.98 16 9 N -0.59 -14.37 5.09 -10.96 -0.06 -14.43 16 10 C -0.30 -8.67 10.16 -14.93 -0.15 -8.82 16 11 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -26.14 13.96 55.50 0.77 -25.36 16 14 Si 0.88 19.63 27.74 -169.99 -4.71 14.91 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 18 C 0.03 0.44 5.64 -2.18 -0.01 0.43 16 19 C 0.15 1.90 3.01 -66.55 -0.20 1.70 16 20 H 0.09 1.24 7.17 -51.93 -0.37 0.87 16 21 N -0.72 -8.52 4.56 -52.47 -0.24 -8.76 16 22 C 0.51 6.80 7.83 -10.99 -0.09 6.71 16 23 O -0.55 -9.32 15.66 5.56 0.09 -9.24 16 24 C -0.14 -1.36 5.66 -27.88 -0.16 -1.51 16 25 C -0.07 -0.77 4.78 -26.73 -0.13 -0.90 16 26 C -0.15 -1.35 5.73 -90.62 -0.52 -1.87 16 27 C -0.18 -1.43 10.18 -26.69 -0.27 -1.71 16 28 C -0.18 -1.54 10.25 -26.69 -0.27 -1.81 16 29 H 0.06 0.43 7.73 -51.93 -0.40 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.63 6.99 -51.93 -0.36 0.27 16 32 H 0.06 0.48 8.10 -51.93 -0.42 0.05 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.88 7.86 -51.93 -0.41 0.47 16 36 H 0.05 0.47 7.69 -51.93 -0.40 0.07 16 37 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 38 H 0.05 0.78 7.77 -51.93 -0.40 0.38 16 39 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.05 0.72 7.75 -51.93 -0.40 0.31 16 42 H 0.10 2.05 7.15 -51.93 -0.37 1.68 16 43 H 0.40 4.04 5.85 -40.82 -0.24 3.80 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 47 H 0.07 0.76 7.83 -51.93 -0.41 0.36 16 48 H 0.11 0.86 8.08 -51.93 -0.42 0.44 16 49 H 0.09 0.71 8.03 -51.93 -0.42 0.30 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 411.90 15.07 6.21 6.21 Total: -1.00 -34.79 411.90 -9.65 -44.45 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -9.04 Total: 13.89 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.61 Total: 1.98 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.67 Total: -57.21 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: 0.17 Total: -24.22 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.79 -9.65 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734143874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.767 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds