Wall clock time and date at job start Sat Apr 11 2020 05:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 C 1.50703 * 115.54939 * 294.72730 * 3 2 1 5 5 O 1.21274 * 119.99972 * 99.60147 * 4 3 2 6 6 N 1.34778 * 119.99968 * 279.60219 * 4 3 2 7 7 C 1.48148 * 127.83494 * 354.67441 * 6 4 3 8 8 C 1.54388 * 104.61475 * 140.67297 * 7 6 4 9 9 H 1.08997 * 110.34529 * 264.99057 * 8 7 6 10 10 N 1.46905 * 110.42866 * 142.78017 * 8 7 6 11 11 C 1.46900 * 111.00185 * 89.41136 * 10 8 7 12 12 C 1.50697 * 109.47323 * 179.97438 * 11 10 8 13 13 O 1.21291 * 119.99777 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99786 * 179.97438 * 12 11 10 15 15 C 1.37109 * 119.99739 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99814 * 359.97438 * 15 14 12 17 17 C 1.38943 * 119.99768 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00332 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99944 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46932 * 60.00101 * 19 17 15 21 21 H 1.48496 * 109.47166 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46856 * 300.00214 * 19 17 15 23 23 C 1.54283 * 104.96295 * 23.86746 * 8 7 6 24 24 C 1.53001 * 110.34007 * 241.13014 * 23 8 7 25 25 C 1.52998 * 110.34879 * 118.86888 * 23 8 7 26 26 C 1.48143 * 127.83543 * 174.98831 * 6 4 3 27 27 C 1.53001 * 117.51681 * 80.42644 * 3 2 1 28 28 C 1.52997 * 117.49591 * 149.05517 * 3 2 1 29 29 H 1.08998 * 109.47197 * 295.67983 * 1 2 3 30 30 H 1.08998 * 109.47427 * 55.68308 * 1 2 3 31 31 H 1.08998 * 109.47149 * 175.67950 * 1 2 3 32 32 H 1.08999 * 109.47095 * 240.00308 * 2 1 3 33 33 H 1.08999 * 109.47312 * 119.99807 * 2 1 3 34 34 H 1.09002 * 110.40289 * 259.45720 * 7 6 4 35 35 H 1.08995 * 110.41038 * 21.88918 * 7 6 4 36 36 H 1.00904 * 110.99948 * 325.45489 * 10 8 7 37 37 H 1.09004 * 109.46722 * 299.99938 * 11 10 8 38 38 H 1.09000 * 109.46876 * 59.99736 * 11 10 8 39 39 H 0.96996 * 120.00676 * 359.97438 * 14 12 11 40 40 H 0.97000 * 120.00350 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.46997 * 176.99224 * 24 23 8 42 42 H 1.09004 * 109.46853 * 296.98608 * 24 23 8 43 43 H 1.08998 * 109.47579 * 56.98899 * 24 23 8 44 44 H 1.08999 * 109.46578 * 303.01115 * 25 23 8 45 45 H 1.09003 * 109.46949 * 63.00467 * 25 23 8 46 46 H 1.08997 * 109.47383 * 183.00579 * 25 23 8 47 47 H 1.08991 * 110.41131 * 338.11236 * 26 6 4 48 48 H 1.08999 * 110.40239 * 100.42869 * 26 6 4 49 49 H 1.09003 * 117.49643 * 214.96923 * 27 3 2 50 50 H 1.08998 * 117.49983 * 359.97438 * 27 3 2 51 51 H 1.08990 * 117.50370 * 359.97438 * 28 3 2 52 52 H 1.09009 * 117.49534 * 144.99866 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7204 2.2449 -1.2350 5 8 0.7875 3.0198 -1.2301 6 7 2.4714 2.1014 -2.3449 7 6 3.7037 1.2959 -2.5104 8 6 3.5740 0.6697 -3.9156 9 1 3.1478 -0.3312 -3.8466 10 7 4.8842 0.6213 -4.5783 11 6 5.5835 -0.6335 -4.2711 12 6 6.9201 -0.6472 -4.9672 13 8 7.2571 0.2959 -5.6515 14 7 7.7413 -1.7068 -4.8284 15 6 8.9575 -1.7189 -5.4613 16 1 9.2572 -0.8796 -6.0713 17 6 9.8039 -2.8116 -5.3187 18 7 9.4385 -3.8335 -4.5777 19 14 11.4606 -2.8285 -6.1816 20 1 12.2755 -1.6797 -5.7111 21 1 12.1673 -4.0972 -5.8715 22 1 11.2558 -2.7223 -7.6485 23 6 2.6191 1.6075 -4.6831 24 6 1.3625 0.8493 -5.1153 25 6 3.3260 2.2058 -5.9010 26 6 2.2553 2.7183 -3.6743 27 6 2.0628 2.1842 1.3380 28 6 3.3728 1.7206 0.6979 29 1 -0.3633 0.4453 0.9261 30 1 -0.3634 0.5793 -0.8487 31 1 -0.3633 -1.0247 -0.0774 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.5852 1.9350 -2.4589 35 1 3.7533 0.5165 -1.7501 36 1 5.4468 1.4200 -4.3260 37 1 5.7335 -0.7116 -3.1942 38 1 4.9856 -1.4767 -4.6168 39 1 7.4723 -2.4604 -4.2803 40 1 10.0292 -4.5964 -4.4785 41 1 0.6751 1.5365 -5.6085 42 1 1.6384 0.0529 -5.8065 43 1 0.8787 0.4182 -4.2388 44 1 4.2253 2.7301 -5.5778 45 1 3.5991 1.4074 -6.5911 46 1 2.6573 2.9059 -6.4017 47 1 1.2124 3.0120 -3.7921 48 1 2.9092 3.5807 -3.8038 49 1 1.8468 3.2526 1.3250 50 1 1.7141 1.6447 2.2186 51 1 3.8862 0.8760 1.1573 52 1 4.0187 2.4839 0.2637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734501783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:07 Heat of formation + Delta-G solvation = -46.660264 kcal Electronic energy + Delta-G solvation = -30516.980890 eV Core-core repulsion = 26517.025431 eV Total energy + Delta-G solvation = -3999.955459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81828 -39.18517 -38.09258 -36.97965 -34.64908 -33.85671 -33.48876 -32.22336 -31.25552 -28.92590 -27.43058 -27.14075 -26.02097 -24.53454 -24.11300 -23.01437 -22.51053 -21.87282 -19.51447 -19.04582 -18.61005 -17.93208 -16.87676 -16.48543 -16.23891 -15.80788 -15.38331 -15.24865 -14.58232 -14.54820 -14.29571 -14.13471 -13.97021 -13.84637 -13.57178 -13.46836 -13.18882 -12.94638 -12.82307 -12.44795 -12.33108 -12.14726 -11.94755 -11.85531 -11.83990 -11.66977 -11.60214 -11.53268 -11.45484 -11.07251 -10.95255 -10.75514 -10.68143 -10.58939 -10.46957 -10.33295 -10.24488 -9.85570 -9.53242 -8.94020 -8.50108 -8.10820 -7.99475 -6.45027 -3.85987 2.40455 2.65908 3.17629 3.23786 3.27925 3.34754 3.86493 3.99289 4.12413 4.23909 4.28024 4.47912 4.49193 4.54856 4.63658 4.79856 5.00104 5.04222 5.05925 5.12189 5.14654 5.21184 5.22266 5.24898 5.30609 5.43983 5.52006 5.55720 5.58025 5.61724 5.65497 5.67365 5.73581 5.74376 5.77503 5.79688 5.84597 5.91611 5.97866 6.01597 6.04570 6.20643 6.23151 6.29680 6.62750 7.13970 7.35119 7.51866 7.54827 7.98229 8.02502 8.57378 9.14469 9.50581 10.01711 10.72543 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002615 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.715899 B =10704.448046 C =11769.624331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.152 4.152 4 C 0.574 3.426 5 O -0.539 6.539 6 N -0.614 5.614 7 C 0.072 3.928 8 C 0.082 3.918 9 H 0.090 0.910 10 N -0.649 5.649 11 C 0.048 3.952 12 C 0.440 3.560 13 O -0.583 6.583 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.102 0.898 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.068 4.068 24 C -0.134 4.134 25 C -0.116 4.116 26 C 0.111 3.889 27 C -0.144 4.144 28 C -0.164 4.164 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.351 0.649 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.099 0.901 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 6.736 9.620 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.155 4.155 4 C 0.362 3.638 5 O -0.416 6.416 6 N -0.347 5.347 7 C -0.054 4.054 8 C -0.030 4.030 9 H 0.108 0.892 10 N -0.281 5.281 11 C -0.085 4.085 12 C 0.226 3.774 13 O -0.467 6.467 14 N -0.199 5.199 15 C -0.430 4.430 16 H 0.120 0.880 17 C -0.178 4.178 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.070 4.070 24 C -0.191 4.191 25 C -0.174 4.174 26 C -0.012 4.012 27 C -0.181 4.181 28 C -0.201 4.201 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.172 0.828 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.118 0.882 50 H 0.122 0.878 51 H 0.124 0.876 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.778 7.382 8.694 20.288 hybrid contribution 1.078 -0.515 0.925 1.511 sum -15.700 6.867 9.619 19.651 Atomic orbital electron populations 1.21717 0.94879 1.01581 1.02531 1.21007 0.96551 0.91144 1.02829 1.21428 1.03852 0.97605 0.92638 1.19121 0.81049 0.81478 0.82135 1.90692 1.30148 1.37659 1.83083 1.48811 1.26779 1.48524 1.10600 1.23379 0.87222 0.95205 0.99564 1.22626 0.91541 0.99231 0.89571 0.89166 1.60301 1.03162 1.04481 1.60158 1.21754 0.95358 0.93432 0.97916 1.19772 0.86171 0.84916 0.86568 1.90529 1.76164 1.36370 1.43635 1.41857 1.16261 1.17311 1.44515 1.19649 0.92501 1.04233 1.26585 0.87972 1.25250 1.00070 0.95149 0.97375 1.69597 1.38219 1.07343 1.39150 0.85930 0.81278 0.77414 0.79682 1.19909 1.20977 1.19867 1.21521 0.95345 0.94578 0.95551 1.21825 0.96101 1.00196 1.00999 1.21520 0.98967 1.00699 0.96195 1.22571 1.02321 0.95629 0.80635 1.22983 0.99986 1.00991 0.94174 1.23163 0.90189 1.03892 1.02868 0.92433 0.92509 0.92418 0.91157 0.90732 0.90794 0.89914 0.82753 0.93855 0.89536 0.77487 0.91801 0.92527 0.91880 0.93081 0.92196 0.90775 0.93921 0.90072 0.90987 0.88243 0.87829 0.87631 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.84 37.16 0.37 -0.93 16 2 C -0.08 -0.64 5.76 -26.73 -0.15 -0.80 16 3 C -0.15 -1.45 0.95 -155.66 -0.15 -1.60 16 4 C 0.57 7.09 6.38 -10.98 -0.07 7.02 16 5 O -0.54 -8.51 17.31 5.56 0.10 -8.41 16 6 N -0.61 -6.79 3.32 -169.31 -0.56 -7.36 16 7 C 0.07 0.72 6.25 -2.41 -0.02 0.70 16 8 C 0.08 0.90 3.01 -66.31 -0.20 0.70 16 9 H 0.09 0.97 7.39 -51.93 -0.38 0.59 16 10 N -0.65 -9.01 4.20 -106.51 -0.45 -9.46 16 11 C 0.05 0.75 6.02 -4.98 -0.03 0.72 16 12 C 0.44 9.75 7.82 -10.99 -0.09 9.66 16 13 O -0.58 -14.99 15.78 5.55 0.09 -14.90 16 14 N -0.56 -13.66 5.29 -10.96 -0.06 -13.71 16 15 C -0.30 -8.14 9.68 -14.93 -0.14 -8.28 16 16 H 0.10 2.91 7.16 -52.48 -0.38 2.53 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 19 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.07 -0.71 1.03 -153.11 -0.16 -0.87 16 24 C -0.13 -1.31 8.24 37.16 0.31 -1.00 16 25 C -0.12 -1.31 7.45 37.16 0.28 -1.03 16 26 C 0.11 1.20 6.12 -2.41 -0.01 1.18 16 27 C -0.14 -1.23 9.88 -26.73 -0.26 -1.50 16 28 C -0.16 -1.33 9.10 -26.73 -0.24 -1.57 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.60 7.58 -51.93 -0.39 0.21 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.59 7.75 -51.93 -0.40 0.18 16 33 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.75 7.56 -51.93 -0.39 0.36 16 35 H 0.08 0.76 6.62 -51.93 -0.34 0.41 16 36 H 0.35 5.12 7.34 -39.29 -0.29 4.83 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 40 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.72 7.40 -51.93 -0.38 0.34 16 45 H 0.07 0.98 7.96 -51.93 -0.41 0.56 16 46 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.93 7.65 -51.93 -0.40 0.53 16 48 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 49 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 50 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 LS Contribution 417.03 15.07 6.28 6.28 Total: -1.00 -31.32 417.03 -8.70 -40.02 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -9.13 Total: 12.24 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.68 Total: 2.92 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.34 Total: -53.76 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.18 Total: -23.31 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.32 -8.70 -40.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734501783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.641 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds