Wall clock time and date at job start Sat Apr 11 2020 05:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47040 * 2 1 4 4 C 1.50703 * 115.54939 * 294.72730 * 3 2 1 5 5 O 1.21274 * 119.99972 * 99.60147 * 4 3 2 6 6 N 1.34778 * 119.99968 * 279.60219 * 4 3 2 7 7 C 1.48148 * 127.83494 * 354.67441 * 6 4 3 8 8 C 1.54388 * 104.61475 * 140.67297 * 7 6 4 9 9 H 1.08997 * 110.34529 * 264.99057 * 8 7 6 10 10 N 1.46905 * 110.42866 * 142.78017 * 8 7 6 11 11 C 1.46900 * 111.00185 * 89.41136 * 10 8 7 12 12 C 1.50697 * 109.47323 * 179.97438 * 11 10 8 13 13 O 1.21291 * 119.99777 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99786 * 179.97438 * 12 11 10 15 15 C 1.37109 * 119.99739 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99814 * 359.97438 * 15 14 12 17 17 C 1.38943 * 119.99768 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00332 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99944 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46932 * 60.00101 * 19 17 15 21 21 H 1.48496 * 109.47166 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46856 * 300.00214 * 19 17 15 23 23 C 1.54283 * 104.96295 * 23.86746 * 8 7 6 24 24 C 1.53001 * 110.34007 * 241.13014 * 23 8 7 25 25 C 1.52998 * 110.34879 * 118.86888 * 23 8 7 26 26 C 1.48143 * 127.83543 * 174.98831 * 6 4 3 27 27 C 1.53001 * 117.51681 * 80.42644 * 3 2 1 28 28 C 1.52997 * 117.49591 * 149.05517 * 3 2 1 29 29 H 1.08998 * 109.47197 * 295.67983 * 1 2 3 30 30 H 1.08998 * 109.47427 * 55.68308 * 1 2 3 31 31 H 1.08998 * 109.47149 * 175.67950 * 1 2 3 32 32 H 1.08999 * 109.47095 * 240.00308 * 2 1 3 33 33 H 1.08999 * 109.47312 * 119.99807 * 2 1 3 34 34 H 1.09002 * 110.40289 * 259.45720 * 7 6 4 35 35 H 1.08995 * 110.41038 * 21.88918 * 7 6 4 36 36 H 1.00904 * 110.99948 * 325.45489 * 10 8 7 37 37 H 1.09004 * 109.46722 * 299.99938 * 11 10 8 38 38 H 1.09000 * 109.46876 * 59.99736 * 11 10 8 39 39 H 0.96996 * 120.00676 * 359.97438 * 14 12 11 40 40 H 0.97000 * 120.00350 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.46997 * 176.99224 * 24 23 8 42 42 H 1.09004 * 109.46853 * 296.98608 * 24 23 8 43 43 H 1.08998 * 109.47579 * 56.98899 * 24 23 8 44 44 H 1.08999 * 109.46578 * 303.01115 * 25 23 8 45 45 H 1.09003 * 109.46949 * 63.00467 * 25 23 8 46 46 H 1.08997 * 109.47383 * 183.00579 * 25 23 8 47 47 H 1.08991 * 110.41131 * 338.11236 * 26 6 4 48 48 H 1.08999 * 110.40239 * 100.42869 * 26 6 4 49 49 H 1.09003 * 117.49643 * 214.96923 * 27 3 2 50 50 H 1.08998 * 117.49983 * 359.97438 * 27 3 2 51 51 H 1.08990 * 117.50370 * 359.97438 * 28 3 2 52 52 H 1.09009 * 117.49534 * 144.99866 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7204 2.2449 -1.2350 5 8 0.7875 3.0198 -1.2301 6 7 2.4714 2.1014 -2.3449 7 6 3.7037 1.2959 -2.5104 8 6 3.5740 0.6697 -3.9156 9 1 3.1478 -0.3312 -3.8466 10 7 4.8842 0.6213 -4.5783 11 6 5.5835 -0.6335 -4.2711 12 6 6.9201 -0.6472 -4.9672 13 8 7.2571 0.2959 -5.6515 14 7 7.7413 -1.7068 -4.8284 15 6 8.9575 -1.7189 -5.4613 16 1 9.2572 -0.8796 -6.0713 17 6 9.8039 -2.8116 -5.3187 18 7 9.4385 -3.8335 -4.5777 19 14 11.4606 -2.8285 -6.1816 20 1 12.2755 -1.6797 -5.7111 21 1 12.1673 -4.0972 -5.8715 22 1 11.2558 -2.7223 -7.6485 23 6 2.6191 1.6075 -4.6831 24 6 1.3625 0.8493 -5.1153 25 6 3.3260 2.2058 -5.9010 26 6 2.2553 2.7183 -3.6743 27 6 2.0628 2.1842 1.3380 28 6 3.3728 1.7206 0.6979 29 1 -0.3633 0.4453 0.9261 30 1 -0.3634 0.5793 -0.8487 31 1 -0.3633 -1.0247 -0.0774 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.5852 1.9350 -2.4589 35 1 3.7533 0.5165 -1.7501 36 1 5.4468 1.4200 -4.3260 37 1 5.7335 -0.7116 -3.1942 38 1 4.9856 -1.4767 -4.6168 39 1 7.4723 -2.4604 -4.2803 40 1 10.0292 -4.5964 -4.4785 41 1 0.6751 1.5365 -5.6085 42 1 1.6384 0.0529 -5.8065 43 1 0.8787 0.4182 -4.2388 44 1 4.2253 2.7301 -5.5778 45 1 3.5991 1.4074 -6.5911 46 1 2.6573 2.9059 -6.4017 47 1 1.2124 3.0120 -3.7921 48 1 2.9092 3.5807 -3.8038 49 1 1.8468 3.2526 1.3250 50 1 1.7141 1.6447 2.2186 51 1 3.8862 0.8760 1.1573 52 1 4.0187 2.4839 0.2637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734501783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:06 Heat of formation + Delta-G solvation = -66.471102 kcal Electronic energy + Delta-G solvation = -30517.839952 eV Core-core repulsion = 26517.025431 eV Total energy + Delta-G solvation = -4000.814521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.71440 -40.28821 -39.64296 -37.84536 -36.12714 -35.41790 -34.48377 -33.20536 -32.86104 -30.05234 -28.33036 -28.08483 -27.46346 -25.70180 -25.20637 -23.87471 -23.24080 -22.68564 -21.10908 -20.11722 -19.84723 -19.46380 -17.87780 -17.61595 -17.25184 -17.01874 -16.64473 -16.31042 -16.13920 -15.71249 -15.42150 -15.34463 -15.07800 -14.82930 -14.52333 -14.37515 -14.27520 -14.03878 -13.81296 -13.59844 -13.48190 -13.26742 -13.15033 -13.01516 -12.79965 -12.72752 -12.63693 -12.50511 -12.46826 -12.39565 -12.14187 -12.11385 -11.85233 -11.64105 -11.51257 -11.46064 -11.38387 -11.01191 -10.76190 -10.27982 -9.96935 -9.87273 -9.23779 -8.43285 -5.91184 1.41665 1.43950 1.48234 1.53943 1.79503 2.11533 2.31425 2.66772 2.91900 3.24706 3.30570 3.47028 3.58130 3.68488 3.75897 3.84611 3.88387 3.97828 4.11267 4.21744 4.37169 4.38891 4.41416 4.49183 4.51379 4.54641 4.60906 4.66422 4.69439 4.71705 4.75354 4.81013 4.86789 4.92405 4.94726 5.03704 5.04883 5.11948 5.14630 5.15598 5.16679 5.32707 5.35242 5.39313 5.44553 5.64687 5.93872 6.14540 6.38038 6.48250 6.64760 7.05028 7.17201 7.62147 8.17556 8.73768 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002615 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.715899 B =10704.448046 C =11769.624331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.163 4.163 4 C 0.569 3.431 5 O -0.582 6.582 6 N -0.611 5.611 7 C 0.077 3.923 8 C 0.087 3.913 9 H 0.100 0.900 10 N -0.657 5.657 11 C 0.064 3.936 12 C 0.440 3.560 13 O -0.622 6.622 14 N -0.574 5.574 15 C -0.332 4.332 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.920 5.920 19 Si 0.988 3.012 20 H -0.272 1.272 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.061 4.061 24 C -0.129 4.129 25 C -0.110 4.110 26 C 0.110 3.890 27 C -0.146 4.146 28 C -0.151 4.151 29 H 0.057 0.943 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.347 0.653 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.123 0.877 51 H 0.127 0.873 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.334 5.580 10.827 20.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.166 4.166 4 C 0.359 3.641 5 O -0.462 6.462 6 N -0.343 5.343 7 C -0.048 4.048 8 C -0.024 4.024 9 H 0.118 0.882 10 N -0.289 5.289 11 C -0.069 4.069 12 C 0.227 3.773 13 O -0.508 6.508 14 N -0.212 5.212 15 C -0.461 4.461 16 H 0.096 0.904 17 C -0.211 4.211 18 N -0.561 5.561 19 Si 0.812 3.188 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.199 1.199 23 C -0.063 4.063 24 C -0.187 4.187 25 C -0.168 4.168 26 C -0.012 4.012 27 C -0.183 4.183 28 C -0.188 4.188 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.168 0.832 37 H 0.090 0.910 38 H 0.122 0.878 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.141 0.859 51 H 0.145 0.855 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.806 6.205 9.908 20.472 hybrid contribution 1.020 -0.067 0.521 1.148 sum -15.786 6.138 10.429 19.891 Atomic orbital electron populations 1.21697 0.95497 1.01907 1.01407 1.21042 0.95963 0.90232 1.03930 1.21457 1.05412 0.98064 0.91627 1.19679 0.80356 0.81095 0.82998 1.90666 1.32002 1.39622 1.83894 1.48853 1.26866 1.48224 1.10399 1.23370 0.86634 0.95455 0.99334 1.22621 0.89929 0.99947 0.89897 0.88170 1.60273 1.03926 1.03538 1.61193 1.21611 0.91736 0.94878 0.98635 1.20894 0.87678 0.83327 0.85367 1.90504 1.77510 1.37619 1.45190 1.41921 1.16053 1.18234 1.44953 1.19601 0.94431 1.04258 1.27846 0.90398 1.25956 1.02885 0.94529 0.97741 1.69652 1.39261 1.07603 1.39586 0.85060 0.77477 0.77792 0.78467 1.19729 1.19652 1.19903 1.21450 0.95491 0.94365 0.94988 1.21782 0.95737 1.00183 1.00988 1.21428 0.98909 1.00214 0.96207 1.22557 1.01875 0.95881 0.80900 1.23053 1.00502 1.00324 0.94424 1.23231 0.89568 1.04180 1.01778 0.92360 0.95086 0.91070 0.91014 0.88546 0.90664 0.88231 0.83248 0.90983 0.87771 0.76960 0.91384 0.91951 0.91901 0.93088 0.93197 0.92601 0.92728 0.90893 0.90864 0.89839 0.85865 0.85524 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.84 71.98 0.71 -1.62 16 2 C -0.07 -1.03 5.76 30.60 0.18 -0.85 16 3 C -0.16 -2.81 0.95 -52.93 -0.05 -2.87 16 4 C 0.57 13.69 6.38 87.66 0.56 14.25 16 5 O -0.58 -18.64 17.31 -3.01 -0.05 -18.70 16 6 N -0.61 -12.87 3.32 -807.97 -2.68 -15.54 16 7 C 0.08 1.37 6.25 86.53 0.54 1.91 16 8 C 0.09 1.73 3.01 45.82 0.14 1.87 16 9 H 0.10 1.85 7.39 -2.39 -0.02 1.84 16 10 N -0.66 -17.29 4.20 -490.89 -2.06 -19.35 16 11 C 0.06 1.86 6.02 85.56 0.52 2.38 16 12 C 0.44 19.31 7.82 87.66 0.69 19.99 16 13 O -0.62 -32.37 15.78 -3.06 -0.05 -32.42 16 14 N -0.57 -27.86 5.29 -306.99 -1.62 -29.48 16 15 C -0.33 -18.21 9.68 84.04 0.81 -17.39 16 16 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 17 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 18 N -0.92 -48.21 13.05 21.66 0.28 -47.93 16 19 Si 0.99 41.94 29.55 68.60 2.03 43.97 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C -0.06 -1.21 1.03 -51.27 -0.05 -1.26 16 24 C -0.13 -2.36 8.24 71.98 0.59 -1.77 16 25 C -0.11 -2.42 7.45 71.98 0.54 -1.88 16 26 C 0.11 2.32 6.12 86.54 0.53 2.85 16 27 C -0.15 -2.25 9.88 30.59 0.30 -1.95 16 28 C -0.15 -2.06 9.10 30.59 0.28 -1.79 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.03 0.64 7.58 -2.39 -0.02 0.62 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.98 7.75 -2.39 -0.02 0.96 16 33 H 0.10 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.08 1.38 7.56 -2.39 -0.02 1.36 16 35 H 0.10 1.48 6.62 -2.39 -0.02 1.47 16 36 H 0.35 9.78 7.34 -89.69 -0.66 9.12 16 37 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.10 2.76 8.07 -2.39 -0.02 2.74 16 39 H 0.40 18.18 7.90 -92.71 -0.73 17.45 16 40 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 1.19 7.40 -2.39 -0.02 1.17 16 45 H 0.05 1.45 7.96 -2.39 -0.02 1.43 16 46 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.67 7.65 -2.39 -0.02 1.65 16 48 H 0.07 1.52 7.87 -2.39 -0.02 1.50 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -68.78 417.03 2.11 -66.68 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -0.48 Total: 41.03 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 6.74 Total: 11.75 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -6.08 Total: -112.30 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.10 Total: -51.12 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -68.78 2.11 -66.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734501783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.205 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds