Wall clock time and date at job start Sat Apr 11 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 C 1.50698 * 115.55161 * 294.73651 * 3 2 1 5 5 O 1.21279 * 119.99782 * 99.33735 * 4 3 2 6 6 N 1.34773 * 120.00052 * 279.33783 * 4 3 2 7 7 C 1.46501 * 120.00041 * 175.00057 * 6 4 3 8 8 H 1.08993 * 109.47111 * 325.00146 * 7 6 4 9 9 C 1.52999 * 109.46981 * 85.00063 * 7 6 4 10 10 C 1.52997 * 109.47401 * 59.99911 * 9 7 6 11 11 C 1.52998 * 109.46955 * 60.00243 * 10 9 7 12 12 C 1.53005 * 109.47138 * 299.99502 * 11 10 9 13 13 H 1.08999 * 109.47336 * 300.00450 * 12 11 10 14 14 N 1.46897 * 109.47180 * 179.97438 * 12 11 10 15 15 C 1.46899 * 110.99531 * 85.00612 * 14 12 11 16 16 C 1.50709 * 109.47035 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99572 * 359.97438 * 16 15 14 18 18 N 1.34771 * 119.99985 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99921 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99593 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99828 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00151 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99673 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47144 * 60.00663 * 23 21 19 25 25 H 1.48500 * 109.46896 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47439 * 300.00208 * 23 21 19 27 27 C 1.52994 * 109.47088 * 204.99693 * 7 6 4 28 28 C 1.52999 * 117.51666 * 80.44030 * 3 2 1 29 29 C 1.52999 * 117.49439 * 149.06913 * 3 2 1 30 30 H 1.09004 * 109.47054 * 175.69295 * 1 2 3 31 31 H 1.08997 * 109.47338 * 295.69320 * 1 2 3 32 32 H 1.09004 * 109.47601 * 55.69243 * 1 2 3 33 33 H 1.09001 * 109.47157 * 240.00218 * 2 1 3 34 34 H 1.09003 * 109.47170 * 120.00024 * 2 1 3 35 35 H 0.97007 * 119.99873 * 354.99968 * 6 4 3 36 36 H 1.09002 * 109.47464 * 180.02562 * 9 7 6 37 37 H 1.09010 * 109.47161 * 299.99998 * 9 7 6 38 38 H 1.09003 * 109.47203 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.47137 * 300.00027 * 10 9 7 40 40 H 1.08999 * 109.47375 * 59.99929 * 11 10 9 41 41 H 1.09007 * 109.47148 * 180.02562 * 11 10 9 42 42 H 1.00894 * 111.00173 * 321.05144 * 14 12 11 43 43 H 1.08998 * 109.47231 * 299.99425 * 15 14 12 44 44 H 1.09002 * 109.47554 * 59.99931 * 15 14 12 45 45 H 0.96998 * 119.99949 * 359.97438 * 18 16 15 46 46 H 0.97003 * 119.99682 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47061 * 60.00178 * 27 7 6 48 48 H 1.08999 * 109.47061 * 180.02562 * 27 7 6 49 49 H 1.08991 * 117.49924 * 214.96662 * 28 3 2 50 50 H 1.09000 * 117.49740 * 359.97438 * 28 3 2 51 51 H 1.09006 * 117.50120 * 359.97097 * 29 3 2 52 52 H 1.09000 * 117.49853 * 145.00219 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.7202 2.2450 -1.2348 5 8 0.7843 3.0164 -1.2313 6 7 2.4743 2.1055 -2.3431 7 6 2.0994 2.8016 -3.5765 8 1 1.0131 2.8419 -3.6552 9 6 2.6621 4.2241 -3.5505 10 6 4.1870 4.1675 -3.4401 11 6 4.7579 3.4153 -4.6439 12 6 4.1954 1.9927 -4.6699 13 1 4.4743 1.4748 -3.7523 14 7 4.7430 1.2707 -5.8261 15 6 6.0499 0.6804 -5.5072 16 6 6.5787 -0.0509 -6.7142 17 8 5.9304 -0.0781 -7.7389 18 7 7.7715 -0.6754 -6.6545 19 6 8.2529 -1.3403 -7.7527 20 1 7.6760 -1.3638 -8.6654 21 6 9.4828 -1.9838 -7.6913 22 7 10.1845 -1.9555 -6.5805 23 14 10.1383 -2.8902 -9.1873 24 1 10.2877 -1.9379 -10.3169 25 1 11.4591 -3.4874 -8.8648 26 1 9.1890 -3.9664 -9.5694 27 6 2.6704 2.0494 -4.7803 28 6 2.0631 2.1841 1.3381 29 6 3.3730 1.7205 0.6976 30 1 -0.3633 -1.0248 -0.0772 31 1 -0.3634 0.4455 0.9260 32 1 -0.3634 0.5792 -0.8489 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2652 1.5442 -2.3241 36 1 2.3829 4.7422 -4.4679 37 1 2.2554 4.7601 -2.6928 38 1 4.5878 5.1810 -3.4211 39 1 4.4659 3.6496 -2.5224 40 1 4.4790 3.9332 -5.5616 41 1 5.8443 3.3746 -4.5650 42 1 4.8057 1.8738 -6.6325 43 1 6.7465 1.4703 -5.2265 44 1 5.9403 -0.0189 -4.6783 45 1 8.2897 -0.6540 -5.8348 46 1 11.0430 -2.4051 -6.5376 47 1 2.2695 1.0359 -4.7988 48 1 2.3919 2.5675 -5.6979 49 1 1.8471 3.2523 1.3252 50 1 1.7145 1.6445 2.2186 51 1 3.8864 0.8758 1.1570 52 1 4.0187 2.4838 0.2635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752977420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:25 Heat of formation + Delta-G solvation = -70.979850 kcal Electronic energy + Delta-G solvation = -29845.704499 eV Core-core repulsion = 25844.694464 eV Total energy + Delta-G solvation = -4001.010035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.76600 -39.17805 -38.11307 -37.03267 -35.11422 -33.90761 -33.13521 -32.23379 -31.25419 -30.33780 -29.35310 -26.14807 -25.13364 -24.01309 -23.33696 -22.79577 -22.40765 -21.67650 -20.07037 -19.44130 -19.09906 -17.90822 -17.15637 -16.50188 -15.93735 -15.83973 -15.44548 -15.32398 -14.98149 -14.54670 -14.47590 -14.39719 -14.10496 -13.78766 -13.71015 -13.49513 -13.24478 -12.98392 -12.73395 -12.51953 -12.41619 -12.34672 -12.03220 -11.98058 -11.85919 -11.69097 -11.53569 -11.49486 -11.30133 -11.04831 -10.92579 -10.76020 -10.57862 -10.46000 -10.38471 -10.33784 -10.21967 -9.84781 -9.51832 -9.22287 -8.48047 -8.05432 -7.97399 -6.43592 -3.84463 2.41765 2.89403 3.18752 3.24540 3.28937 3.32145 3.88693 4.02610 4.21252 4.24697 4.39093 4.49274 4.56103 4.57152 4.65644 4.84690 4.97098 5.01175 5.02580 5.13377 5.15255 5.20206 5.23376 5.24130 5.27803 5.37576 5.42434 5.48637 5.51144 5.60034 5.61656 5.66569 5.74112 5.75595 5.78200 5.82646 5.86516 5.93548 5.96249 6.00658 6.07541 6.11045 6.20882 6.26632 6.38236 7.20676 7.33034 7.53260 7.63390 8.04282 8.04938 8.59312 9.16013 9.52285 10.03799 10.74070 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014922 B = 0.002244 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.969690 B =12476.109935 C =13311.987839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.157 4.157 4 C 0.553 3.447 5 O -0.538 6.538 6 N -0.716 5.716 7 C 0.148 3.852 8 H 0.087 0.913 9 C -0.130 4.130 10 C -0.111 4.111 11 C -0.153 4.153 12 C 0.089 3.911 13 H 0.072 0.928 14 N -0.663 5.663 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.115 4.115 28 C -0.145 4.145 29 C -0.165 4.165 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.351 0.649 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.105 0.895 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.448 9.339 16.395 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.116 4.116 3 C -0.160 4.160 4 C 0.339 3.661 5 O -0.414 6.414 6 N -0.368 5.368 7 C 0.043 3.957 8 H 0.105 0.895 9 C -0.169 4.169 10 C -0.150 4.150 11 C -0.192 4.192 12 C -0.022 4.022 13 H 0.090 0.910 14 N -0.294 5.294 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.153 4.153 28 C -0.182 4.182 29 C -0.202 4.202 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.171 0.829 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.719 9.175 15.828 23.481 hybrid contribution 1.827 0.072 -0.160 1.835 sum -12.893 9.247 15.668 22.299 Atomic orbital electron populations 1.21723 0.94930 1.01607 1.02526 1.21005 0.96518 0.91171 1.02923 1.21525 1.03713 0.97696 0.93093 1.19489 0.81852 0.81401 0.83396 1.90686 1.29989 1.37223 1.83498 1.46144 1.29681 1.50236 1.10783 1.21001 0.99985 0.91486 0.83180 0.89454 1.21925 0.95837 0.96534 1.02580 1.21417 0.95213 1.00204 0.98144 1.22359 1.00648 0.97154 0.99061 1.21552 0.94437 0.91814 0.94371 0.91034 1.60183 1.25172 1.38290 1.05729 1.21702 0.90117 0.98227 0.98168 1.19819 0.83226 0.84888 0.89514 1.90525 1.58752 1.65004 1.32459 1.41859 1.16909 1.46500 1.14755 1.19654 1.02152 1.28012 0.93123 0.87987 1.25258 0.96316 0.98063 0.98271 1.69604 1.14200 1.44242 1.26324 0.85920 0.77810 0.79579 0.80932 1.19911 1.20974 1.19866 1.21801 0.94980 1.01500 0.97040 1.22954 0.99989 1.00983 0.94286 1.23153 0.90176 1.03854 1.03044 0.92445 0.92501 0.92429 0.90971 0.90837 0.76304 0.90959 0.91523 0.92107 0.92166 0.91441 0.91805 0.82937 0.93898 0.89751 0.77491 0.91818 0.90313 0.90104 0.88247 0.87941 0.87698 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.84 37.16 0.37 -0.85 16 2 C -0.08 -0.58 5.81 -26.73 -0.16 -0.74 16 3 C -0.16 -1.30 1.87 -155.66 -0.29 -1.59 16 4 C 0.55 5.86 6.26 -10.99 -0.07 5.80 16 5 O -0.54 -7.57 16.68 5.56 0.09 -7.48 16 6 N -0.72 -6.53 4.23 -53.81 -0.23 -6.76 16 7 C 0.15 1.42 2.75 -67.93 -0.19 1.23 16 8 H 0.09 0.94 7.65 -51.93 -0.40 0.54 16 9 C -0.13 -1.19 5.60 -26.73 -0.15 -1.34 16 10 C -0.11 -0.98 5.77 -26.73 -0.15 -1.14 16 11 C -0.15 -1.51 5.17 -26.73 -0.14 -1.65 16 12 C 0.09 0.97 2.30 -67.71 -0.16 0.81 16 13 H 0.07 0.73 6.16 -51.93 -0.32 0.41 16 14 N -0.66 -9.94 5.87 -107.98 -0.63 -10.57 16 15 C 0.05 0.85 5.97 -4.97 -0.03 0.82 16 16 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 17 O -0.58 -15.63 15.78 5.55 0.09 -15.54 16 18 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 23 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.11 -1.15 5.21 -26.73 -0.14 -1.29 16 28 C -0.14 -1.09 9.88 -26.73 -0.26 -1.35 16 29 C -0.17 -1.10 9.92 -26.73 -0.27 -1.37 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.57 7.59 -51.93 -0.39 0.18 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.40 3.23 6.87 -40.82 -0.28 2.95 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.70 8.10 -51.92 -0.42 0.28 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.52 7.60 -51.93 -0.39 0.13 16 40 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 41 H 0.06 0.68 7.45 -51.92 -0.39 0.29 16 42 H 0.35 5.55 8.17 -39.30 -0.32 5.23 16 43 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 44 H 0.08 1.29 8.06 -51.93 -0.42 0.88 16 45 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 415.34 15.07 6.26 6.26 Total: -1.00 -32.01 415.34 -9.78 -41.79 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -9.05 Total: 14.63 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.96 Total: -0.53 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.20 Total: -55.01 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.18 Total: -23.02 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.01 -9.78 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752977420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.186 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds