Wall clock time and date at job start Sat Apr 11 2020 05:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 C 1.50698 * 115.55161 * 294.73651 * 3 2 1 5 5 O 1.21279 * 119.99782 * 99.33735 * 4 3 2 6 6 N 1.34773 * 120.00052 * 279.33783 * 4 3 2 7 7 C 1.46501 * 120.00041 * 175.00057 * 6 4 3 8 8 H 1.08993 * 109.47111 * 325.00146 * 7 6 4 9 9 C 1.52999 * 109.46981 * 85.00063 * 7 6 4 10 10 C 1.52997 * 109.47401 * 59.99911 * 9 7 6 11 11 C 1.52998 * 109.46955 * 60.00243 * 10 9 7 12 12 C 1.53005 * 109.47138 * 299.99502 * 11 10 9 13 13 H 1.08999 * 109.47336 * 300.00450 * 12 11 10 14 14 N 1.46897 * 109.47180 * 179.97438 * 12 11 10 15 15 C 1.46899 * 110.99531 * 85.00612 * 14 12 11 16 16 C 1.50709 * 109.47035 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99572 * 359.97438 * 16 15 14 18 18 N 1.34771 * 119.99985 * 180.02562 * 16 15 14 19 19 C 1.37104 * 119.99921 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99593 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99828 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00151 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99673 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47144 * 60.00663 * 23 21 19 25 25 H 1.48500 * 109.46896 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47439 * 300.00208 * 23 21 19 27 27 C 1.52994 * 109.47088 * 204.99693 * 7 6 4 28 28 C 1.52999 * 117.51666 * 80.44030 * 3 2 1 29 29 C 1.52999 * 117.49439 * 149.06913 * 3 2 1 30 30 H 1.09004 * 109.47054 * 175.69295 * 1 2 3 31 31 H 1.08997 * 109.47338 * 295.69320 * 1 2 3 32 32 H 1.09004 * 109.47601 * 55.69243 * 1 2 3 33 33 H 1.09001 * 109.47157 * 240.00218 * 2 1 3 34 34 H 1.09003 * 109.47170 * 120.00024 * 2 1 3 35 35 H 0.97007 * 119.99873 * 354.99968 * 6 4 3 36 36 H 1.09002 * 109.47464 * 180.02562 * 9 7 6 37 37 H 1.09010 * 109.47161 * 299.99998 * 9 7 6 38 38 H 1.09003 * 109.47203 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.47137 * 300.00027 * 10 9 7 40 40 H 1.08999 * 109.47375 * 59.99929 * 11 10 9 41 41 H 1.09007 * 109.47148 * 180.02562 * 11 10 9 42 42 H 1.00894 * 111.00173 * 321.05144 * 14 12 11 43 43 H 1.08998 * 109.47231 * 299.99425 * 15 14 12 44 44 H 1.09002 * 109.47554 * 59.99931 * 15 14 12 45 45 H 0.96998 * 119.99949 * 359.97438 * 18 16 15 46 46 H 0.97003 * 119.99682 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47061 * 60.00178 * 27 7 6 48 48 H 1.08999 * 109.47061 * 180.02562 * 27 7 6 49 49 H 1.08991 * 117.49924 * 214.96662 * 28 3 2 50 50 H 1.09000 * 117.49740 * 359.97438 * 28 3 2 51 51 H 1.09006 * 117.50120 * 359.97097 * 29 3 2 52 52 H 1.09000 * 117.49853 * 145.00219 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.7202 2.2450 -1.2348 5 8 0.7843 3.0164 -1.2313 6 7 2.4743 2.1055 -2.3431 7 6 2.0994 2.8016 -3.5765 8 1 1.0131 2.8419 -3.6552 9 6 2.6621 4.2241 -3.5505 10 6 4.1870 4.1675 -3.4401 11 6 4.7579 3.4153 -4.6439 12 6 4.1954 1.9927 -4.6699 13 1 4.4743 1.4748 -3.7523 14 7 4.7430 1.2707 -5.8261 15 6 6.0499 0.6804 -5.5072 16 6 6.5787 -0.0509 -6.7142 17 8 5.9304 -0.0781 -7.7389 18 7 7.7715 -0.6754 -6.6545 19 6 8.2529 -1.3403 -7.7527 20 1 7.6760 -1.3638 -8.6654 21 6 9.4828 -1.9838 -7.6913 22 7 10.1845 -1.9555 -6.5805 23 14 10.1383 -2.8902 -9.1873 24 1 10.2877 -1.9379 -10.3169 25 1 11.4591 -3.4874 -8.8648 26 1 9.1890 -3.9664 -9.5694 27 6 2.6704 2.0494 -4.7803 28 6 2.0631 2.1841 1.3381 29 6 3.3730 1.7205 0.6976 30 1 -0.3633 -1.0248 -0.0772 31 1 -0.3634 0.4455 0.9260 32 1 -0.3634 0.5792 -0.8489 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2652 1.5442 -2.3241 36 1 2.3829 4.7422 -4.4679 37 1 2.2554 4.7601 -2.6928 38 1 4.5878 5.1810 -3.4211 39 1 4.4659 3.6496 -2.5224 40 1 4.4790 3.9332 -5.5616 41 1 5.8443 3.3746 -4.5650 42 1 4.8057 1.8738 -6.6325 43 1 6.7465 1.4703 -5.2265 44 1 5.9403 -0.0189 -4.6783 45 1 8.2897 -0.6540 -5.8348 46 1 11.0430 -2.4051 -6.5376 47 1 2.2695 1.0359 -4.7988 48 1 2.3919 2.5675 -5.6979 49 1 1.8471 3.2523 1.3252 50 1 1.7145 1.6445 2.2186 51 1 3.8864 0.8758 1.1570 52 1 4.0187 2.4838 0.2635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752977420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:24 Heat of formation + Delta-G solvation = -92.509644 kcal Electronic energy + Delta-G solvation = -29846.638101 eV Core-core repulsion = 25844.694464 eV Total energy + Delta-G solvation = -4001.943637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.57223 -40.31028 -39.61027 -37.81707 -36.34264 -35.73993 -34.06719 -33.24260 -32.82583 -31.24227 -30.37482 -27.73527 -25.86500 -25.60176 -24.05725 -23.43377 -23.10418 -22.59458 -21.23341 -20.63868 -20.16109 -19.85290 -17.96957 -17.76953 -17.07799 -16.72430 -16.50916 -16.33448 -16.32504 -16.01797 -15.70324 -15.38192 -15.13469 -14.92746 -14.73725 -14.50113 -14.19882 -14.08316 -13.73411 -13.54348 -13.37832 -13.26064 -13.21847 -13.19230 -13.01016 -12.79472 -12.61201 -12.42284 -12.40616 -12.17805 -12.12282 -12.10997 -11.72977 -11.49913 -11.42908 -11.35082 -11.21442 -10.95080 -10.65470 -10.32549 -10.05630 -10.00087 -9.23617 -8.45622 -5.94080 1.40438 1.42583 1.53077 1.60938 2.07388 2.15968 2.29883 2.72841 2.90110 3.21948 3.49894 3.61822 3.71916 3.76496 3.79569 3.91110 4.02097 4.03320 4.17665 4.18802 4.32720 4.40829 4.41482 4.46925 4.54770 4.56099 4.60175 4.62514 4.63955 4.72117 4.75489 4.83961 4.98377 5.02671 5.04899 5.06997 5.09723 5.12459 5.18078 5.21267 5.26190 5.33205 5.36366 5.38136 5.42021 5.58261 5.92970 6.14932 6.42904 6.56475 6.61783 7.14096 7.25858 7.58202 8.13760 8.71468 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014922 B = 0.002244 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.969690 B =12476.109935 C =13311.987839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C -0.169 4.169 4 C 0.551 3.449 5 O -0.579 6.579 6 N -0.707 5.707 7 C 0.154 3.846 8 H 0.073 0.927 9 C -0.125 4.125 10 C -0.104 4.104 11 C -0.147 4.147 12 C 0.093 3.907 13 H 0.084 0.916 14 N -0.676 5.676 15 C 0.066 3.934 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.273 1.273 27 C -0.106 4.106 28 C -0.149 4.149 29 C -0.148 4.148 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.409 0.591 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.344 0.656 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.118 0.882 51 H 0.124 0.876 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.434 9.036 17.720 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.172 4.172 4 C 0.338 3.662 5 O -0.458 6.458 6 N -0.359 5.359 7 C 0.049 3.951 8 H 0.091 0.909 9 C -0.163 4.163 10 C -0.142 4.142 11 C -0.186 4.186 12 C -0.016 4.016 13 H 0.102 0.898 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.144 4.144 28 C -0.187 4.187 29 C -0.185 4.185 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.246 0.754 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.164 0.836 43 H 0.084 0.916 44 H 0.123 0.877 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.136 0.864 51 H 0.142 0.858 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.684 8.871 17.183 23.690 hybrid contribution 1.436 0.205 -0.568 1.558 sum -12.248 9.076 16.615 22.549 Atomic orbital electron populations 1.21710 0.95809 1.01743 1.01410 1.21028 0.95709 0.90696 1.03889 1.21521 1.05585 0.97859 0.92262 1.19936 0.81141 0.80937 0.84214 1.90664 1.31748 1.39138 1.84266 1.46084 1.29635 1.49871 1.10324 1.20880 0.99191 0.91862 0.83179 0.90856 1.21865 0.96203 0.95919 1.02354 1.21355 0.94506 1.00579 0.97771 1.22277 1.00455 0.96340 0.99505 1.21596 0.94479 0.92286 0.93264 0.89773 1.60176 1.24254 1.39273 1.06986 1.21563 0.91218 0.98652 0.95199 1.20944 0.82075 0.83704 0.90815 1.90495 1.59646 1.66186 1.34772 1.41926 1.17776 1.47011 1.14334 1.19614 1.03068 1.30176 0.93504 0.90432 1.26002 0.95969 0.98208 1.00988 1.69660 1.14470 1.44399 1.27526 0.85025 0.77566 0.78300 0.77681 1.19741 1.19489 1.19793 1.21694 0.94455 1.01011 0.97266 1.23013 1.00923 1.00309 0.94427 1.23244 0.89436 1.04181 1.01598 0.91412 0.92416 0.94969 0.90993 0.88785 0.75392 0.90331 0.92770 0.91336 0.91675 0.91569 0.91914 0.83650 0.91565 0.87663 0.76937 0.91299 0.91242 0.90064 0.89723 0.86406 0.85759 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.84 71.98 0.71 -1.61 16 2 C -0.08 -0.99 5.81 30.59 0.18 -0.81 16 3 C -0.17 -2.57 1.87 -52.93 -0.10 -2.66 16 4 C 0.55 11.45 6.26 87.66 0.55 11.99 16 5 O -0.58 -16.66 16.68 -3.03 -0.05 -16.71 16 6 N -0.71 -12.18 4.23 -442.56 -1.87 -14.05 16 7 C 0.15 2.85 2.75 44.99 0.12 2.97 16 8 H 0.07 1.60 7.65 -2.39 -0.02 1.59 16 9 C -0.12 -2.16 5.60 30.59 0.17 -1.99 16 10 C -0.10 -1.61 5.77 30.59 0.18 -1.44 16 11 C -0.15 -2.59 5.17 30.60 0.16 -2.43 16 12 C 0.09 1.86 2.30 44.92 0.10 1.96 16 13 H 0.08 1.48 6.16 -2.39 -0.01 1.47 16 14 N -0.68 -19.35 5.87 -495.55 -2.91 -22.26 16 15 C 0.07 2.09 5.97 85.56 0.51 2.60 16 16 C 0.44 20.14 7.82 87.66 0.69 20.82 16 17 O -0.62 -33.99 15.78 -3.06 -0.05 -34.03 16 18 N -0.57 -28.70 5.29 -306.98 -1.62 -30.33 16 19 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 20 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 22 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 23 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 C -0.11 -2.02 5.21 30.59 0.16 -1.86 16 28 C -0.15 -2.02 9.88 30.60 0.30 -1.72 16 29 C -0.15 -1.60 9.92 30.59 0.30 -1.30 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.03 0.65 7.59 -2.38 -0.02 0.63 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 35 H 0.41 5.77 6.87 -92.70 -0.64 5.13 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 0.97 7.60 -2.39 -0.02 0.95 16 40 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 41 H 0.06 1.16 7.45 -2.38 -0.02 1.14 16 42 H 0.34 10.65 8.17 -89.70 -0.73 9.91 16 43 H 0.07 1.83 7.44 -2.39 -0.02 1.81 16 44 H 0.11 2.94 8.06 -2.39 -0.02 2.92 16 45 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 46 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 47 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 52 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -70.10 415.34 -0.05 -70.15 By element: Atomic # 1 Polarization: 46.02 SS G_CDS: -1.17 Total: 44.86 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.31 Total: 6.45 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -6.12 Total: -115.14 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -0.10 Total: -50.75 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -70.10 -0.05 -70.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752977420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.362 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds