Wall clock time and date at job start Sat Apr 11 2020 05:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47424 * 2 1 4 4 C 1.50704 * 110.43254 * 56.66398 * 3 2 1 5 5 O 1.21283 * 120.00204 * 246.40604 * 4 3 2 6 6 N 1.34779 * 119.99877 * 66.40685 * 4 3 2 7 7 C 1.46502 * 120.00030 * 174.88530 * 6 4 3 8 8 C 1.53005 * 109.46898 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47041 * 185.53725 * 9 8 7 11 11 H 1.08996 * 109.87617 * 52.69509 * 10 9 8 12 12 C 1.54324 * 109.88136 * 291.67367 * 10 9 8 13 13 C 1.55408 * 102.82763 * 218.48119 * 12 10 9 14 14 C 1.54909 * 101.66355 * 35.33848 * 13 12 10 15 15 N 1.47022 * 109.88248 * 173.70717 * 10 9 8 16 16 C 1.36943 * 125.64955 * 298.32089 * 15 10 9 17 17 H 1.07995 * 119.99676 * 346.60212 * 16 15 10 18 18 C 1.38811 * 119.99972 * 166.60522 * 16 15 10 19 19 N 1.31618 * 120.00084 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99901 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47287 * 89.99546 * 20 18 16 22 22 H 1.48498 * 109.46939 * 209.99871 * 20 18 16 23 23 H 1.48498 * 109.47053 * 329.99654 * 20 18 16 24 24 C 1.54626 * 110.48803 * 179.20825 * 3 2 1 25 25 C 1.54476 * 101.76365 * 94.01704 * 24 3 2 26 26 N 1.46759 * 105.47599 * 25.41587 * 25 24 3 27 27 C 1.34417 * 111.30039 * 342.98410 * 26 25 24 28 28 O 1.21286 * 124.94004 * 180.41214 * 27 26 25 29 29 H 1.08996 * 109.46822 * 180.11793 * 1 2 3 30 30 H 1.09005 * 109.46622 * 300.11396 * 1 2 3 31 31 H 1.08995 * 109.46940 * 60.11158 * 1 2 3 32 32 H 1.08996 * 109.46987 * 240.00283 * 2 1 3 33 33 H 1.08997 * 109.47683 * 120.00214 * 2 1 3 34 34 H 0.97004 * 119.99823 * 354.89600 * 6 4 3 35 35 H 1.08992 * 109.47090 * 300.00080 * 7 6 4 36 36 H 1.09001 * 109.46781 * 60.00263 * 7 6 4 37 37 H 1.08995 * 109.47216 * 300.00688 * 8 7 6 38 38 H 1.09002 * 109.46831 * 60.00128 * 8 7 6 39 39 H 1.09009 * 109.47118 * 305.53560 * 9 8 7 40 40 H 1.08998 * 109.47563 * 65.53267 * 9 8 7 41 41 H 1.08999 * 110.72073 * 336.75440 * 12 10 9 42 42 H 1.08999 * 110.71605 * 100.02570 * 12 10 9 43 43 H 1.08993 * 110.89365 * 277.26660 * 13 12 10 44 44 H 1.09004 * 111.03282 * 153.47309 * 13 12 10 45 45 H 1.08997 * 110.36494 * 204.23364 * 14 13 12 46 46 H 1.08999 * 110.36664 * 81.91668 * 14 13 12 47 47 H 0.97004 * 120.00076 * 180.02562 * 19 18 16 48 48 H 1.09006 * 110.96403 * 212.13235 * 24 3 2 49 49 H 1.08991 * 110.97033 * 335.89149 * 24 3 2 50 50 H 1.08997 * 110.24679 * 144.41617 * 25 24 3 51 51 H 1.09004 * 110.24298 * 266.32629 * 25 24 3 52 52 H 0.96996 * 124.34944 * 162.96705 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4838 2.1972 1.1799 5 8 0.7092 3.1136 1.0031 6 7 1.8471 1.8539 2.4315 7 6 1.3961 2.6563 3.5713 8 6 1.9451 2.0555 4.8670 9 6 1.4736 2.8931 6.0573 10 6 2.1328 2.3762 7.3376 11 1 3.2136 2.3290 7.2049 12 6 1.5845 0.9752 7.6815 13 6 1.4716 1.0197 9.2308 14 6 1.0591 2.4931 9.4726 15 7 1.8055 3.2647 8.4623 16 6 2.1395 4.5894 8.5563 17 1 2.8658 5.0126 7.8783 18 6 1.5444 5.3883 9.5230 19 7 0.6588 4.8727 10.3490 20 14 1.9994 7.1955 9.6507 21 1 1.0945 7.9961 8.7873 22 1 1.8621 7.6421 11.0602 23 1 3.4035 7.3851 9.2060 24 6 3.5860 1.4699 0.0200 25 6 3.9186 1.5745 -1.4849 26 7 2.7444 2.2015 -2.1028 27 6 1.6734 2.1368 -1.2931 28 8 0.5732 2.5716 -1.5604 29 1 -0.3633 -1.0276 0.0021 30 1 -0.3633 0.5156 0.8890 31 1 -0.3633 0.5121 -0.8909 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.4074 1.0757 2.5777 35 1 1.7593 3.6782 3.4626 36 1 0.3066 2.6594 3.6049 37 1 1.5824 1.0335 4.9758 38 1 3.0346 2.0527 4.8330 39 1 1.7514 3.9355 5.9009 40 1 0.3903 2.8157 6.1496 41 1 0.6051 0.8224 7.2281 42 1 2.2822 0.1998 7.3653 43 1 2.4323 0.8014 9.6970 44 1 0.7018 0.3349 9.5867 45 1 1.3443 2.8070 10.4767 46 1 -0.0142 2.6154 9.3267 47 1 0.2427 5.4311 11.0243 48 1 3.9536 2.3411 0.5622 49 1 3.9869 0.5499 0.4452 50 1 4.8008 2.1970 -1.6338 51 1 4.0827 0.5820 -1.9047 52 1 2.7416 2.6103 -2.9824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753030462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:46 Heat of formation + Delta-G solvation = -64.510765 kcal Electronic energy + Delta-G solvation = -29939.222491 eV Core-core repulsion = 25938.492977 eV Total energy + Delta-G solvation = -4000.729515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -41.56415 -39.03336 -37.80055 -36.77292 -35.46608 -34.55802 -32.86457 -32.07234 -30.62220 -29.37507 -28.32692 -27.55172 -24.89339 -24.11864 -23.37083 -22.68885 -21.88140 -21.44937 -20.14617 -19.51998 -19.07603 -17.88008 -16.93348 -16.74186 -16.39954 -15.94184 -15.63872 -15.07446 -14.98270 -14.77395 -14.58844 -14.31036 -13.98139 -13.81722 -13.53108 -13.41353 -13.29851 -12.81572 -12.77712 -12.38979 -12.27483 -12.05406 -12.02487 -11.89992 -11.70709 -11.50955 -11.44441 -11.22352 -11.00130 -10.81139 -10.70048 -10.55040 -10.07007 -10.00205 -9.98123 -9.85604 -9.74395 -9.59600 -9.57426 -9.44639 -9.10410 -8.55082 -6.74617 -5.70861 -3.05751 2.22764 2.51709 2.82100 3.19371 3.41671 3.47071 3.48279 3.70250 3.89678 4.19034 4.39333 4.51451 4.55025 4.73933 4.84832 4.97381 5.01648 5.05603 5.19096 5.21141 5.27519 5.38705 5.43661 5.47379 5.57693 5.61214 5.62680 5.70870 5.75459 5.87668 5.98037 6.04037 6.07930 6.12851 6.28484 6.36300 6.39722 6.42150 6.44873 6.58821 6.62980 6.72564 6.74564 6.97808 7.19427 7.36837 7.58878 7.66036 7.84080 7.95944 8.12526 8.33200 9.24142 9.85880 10.54765 11.41199 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016246 B = 0.002257 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.098646 B =12401.984993 C =13237.599852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.118 4.118 4 C 0.529 3.471 5 O -0.512 6.512 6 N -0.726 5.726 7 C 0.118 3.882 8 C -0.125 4.125 9 C -0.123 4.123 10 C 0.163 3.837 11 H 0.030 0.970 12 C -0.124 4.124 13 C -0.150 4.150 14 C 0.172 3.828 15 N -0.597 5.597 16 C -0.225 4.225 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.908 3.092 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.128 4.128 25 C 0.104 3.896 26 N -0.737 5.737 27 C 0.540 3.460 28 O -0.493 6.493 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.398 0.602 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.022 0.978 47 H 0.252 0.748 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.083 0.917 51 H 0.075 0.925 52 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.589 -14.931 -21.964 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.134 4.134 3 C -0.125 4.125 4 C 0.312 3.688 5 O -0.386 6.386 6 N -0.378 5.378 7 C -0.004 4.004 8 C -0.164 4.164 9 C -0.163 4.163 10 C 0.055 3.945 11 H 0.048 0.952 12 C -0.162 4.162 13 C -0.189 4.189 14 C 0.047 3.953 15 N -0.321 5.321 16 C -0.354 4.354 17 H 0.092 0.908 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.739 3.261 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.166 4.166 25 C -0.021 4.021 26 N -0.394 5.394 27 C 0.323 3.677 28 O -0.365 6.365 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.040 0.960 47 H 0.062 0.938 48 H 0.108 0.892 49 H 0.120 0.880 50 H 0.102 0.898 51 H 0.094 0.906 52 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.355 -13.842 -21.943 26.967 hybrid contribution 0.552 0.821 -0.234 1.016 sum 7.907 -13.021 -22.178 26.906 Atomic orbital electron populations 1.21873 0.94258 1.02059 1.03725 1.21422 0.97592 0.90929 1.03480 1.21732 0.97644 0.98626 0.94517 1.19689 0.81447 0.84125 0.83518 1.90824 1.32981 1.29671 1.85138 1.46002 1.54045 1.31846 1.05888 1.21529 1.00025 0.94876 0.84010 1.21822 1.00804 1.00181 0.93594 1.22039 1.00841 0.99708 0.93717 1.20916 0.95998 0.89576 0.87993 0.95207 1.22635 1.00034 0.96625 0.96928 1.23057 1.00260 1.00430 0.95149 1.21425 0.94358 0.84821 0.94700 1.44548 1.65243 1.06797 1.15478 1.18960 1.17965 0.83525 1.14948 0.90810 1.24876 0.98193 0.97979 0.99225 1.69938 1.30709 1.34408 1.21501 0.86179 0.77866 0.85172 0.76921 1.21536 1.21735 1.20684 1.22806 0.92019 1.05036 0.96717 1.22034 0.88798 0.98715 0.92566 1.46106 1.11528 1.61188 1.20597 1.19958 0.84207 0.78446 0.85117 1.90789 1.22488 1.46488 1.76697 0.92015 0.92181 0.91391 0.90500 0.90089 0.76806 0.91438 0.91360 0.91722 0.91747 0.91602 0.92262 0.92064 0.92649 0.92532 0.92586 0.91051 0.95965 0.93752 0.89169 0.88016 0.89846 0.90644 0.74824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.42 37.16 0.35 -1.20 16 2 C -0.10 -0.66 4.94 -26.73 -0.13 -0.79 16 3 C -0.12 -1.05 0.49 -155.67 -0.08 -1.13 16 4 C 0.53 6.66 5.05 -10.98 -0.06 6.61 16 5 O -0.51 -9.27 15.37 -13.93 -0.21 -9.48 16 6 N -0.73 -7.44 5.42 -60.29 -0.33 -7.77 16 7 C 0.12 1.52 5.68 -4.04 -0.02 1.50 16 8 C -0.13 -1.56 5.11 -26.73 -0.14 -1.69 16 9 C -0.12 -2.14 4.73 -26.74 -0.13 -2.26 16 10 C 0.16 3.18 3.15 -66.95 -0.21 2.97 16 11 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 12 C -0.12 -2.07 5.79 -24.76 -0.14 -2.21 16 13 C -0.15 -2.80 7.09 -24.45 -0.17 -2.97 16 14 C 0.17 4.15 5.43 -2.53 -0.01 4.14 16 15 N -0.60 -14.87 3.13 -162.58 -0.51 -15.38 16 16 C -0.23 -6.18 9.70 -15.06 -0.15 -6.33 16 17 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.01 -0.17 5.47 -17.43 -0.10 -0.27 16 19 N -0.92 -27.02 10.53 55.49 0.58 -26.43 16 20 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.13 -0.63 6.02 -25.10 -0.15 -0.78 16 25 C 0.10 0.40 7.78 -3.13 -0.02 0.38 16 26 N -0.74 -5.37 6.24 -59.21 -0.37 -5.74 16 27 C 0.54 6.27 6.51 -10.86 -0.07 6.20 16 28 O -0.49 -8.13 15.63 -13.93 -0.22 -8.34 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.69 7.17 -51.93 -0.37 0.32 16 31 H 0.07 0.80 6.61 -51.93 -0.34 0.46 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.37 8.05 -51.93 -0.42 -0.04 16 34 H 0.40 2.74 8.28 -40.82 -0.34 2.40 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.72 7.69 -51.93 -0.40 0.32 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.28 7.81 -51.92 -0.41 0.88 16 40 H 0.06 1.11 7.99 -51.93 -0.42 0.69 16 41 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.93 6.84 -51.93 -0.36 1.57 16 46 H 0.02 0.59 8.09 -51.93 -0.42 0.17 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.09 0.51 7.91 -51.93 -0.41 0.10 16 49 H 0.10 0.20 7.90 -51.93 -0.41 -0.21 16 50 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 51 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 52 H 0.41 2.41 8.96 -40.82 -0.37 2.04 16 LS Contribution 406.26 15.07 6.12 6.12 Total: -1.00 -36.71 406.26 -10.43 -47.14 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -9.25 Total: 0.56 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.23 Total: 2.15 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.62 Total: -55.32 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.43 Total: -17.83 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.71 -10.43 -47.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753030462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.366 kcal (2) G-P(sol) polarization free energy of solvation -36.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds