Wall clock time and date at job start Sat Apr 11 2020 05:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46749 * 2 1 4 4 C 1.50695 * 110.43140 * 305.90275 * 3 2 1 5 5 O 1.21289 * 119.99756 * 122.33661 * 4 3 2 6 6 N 1.34773 * 120.00577 * 302.33248 * 4 3 2 7 7 C 1.46501 * 120.00368 * 174.95012 * 6 4 3 8 8 C 1.53005 * 109.46805 * 180.02562 * 7 6 4 9 9 C 1.53004 * 109.46483 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46918 * 185.10427 * 9 8 7 11 11 H 1.08997 * 109.87297 * 52.84619 * 10 9 8 12 12 C 1.54323 * 110.00832 * 291.75509 * 10 9 8 13 13 C 1.55166 * 102.94149 * 218.31690 * 12 10 9 14 14 C 1.54694 * 101.67389 * 35.33679 * 13 12 10 15 15 N 1.47021 * 109.88368 * 173.87023 * 10 9 8 16 16 C 1.36933 * 125.64400 * 298.47169 * 15 10 9 17 17 H 1.08004 * 120.00397 * 350.70999 * 16 15 10 18 18 C 1.38819 * 119.99848 * 170.70635 * 16 15 10 19 19 N 1.31619 * 119.99994 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47182 * 269.99885 * 20 18 16 22 22 H 1.48504 * 109.47256 * 30.00308 * 20 18 16 23 23 H 1.48505 * 109.47243 * 149.99903 * 20 18 16 24 24 C 1.54627 * 110.48466 * 183.36274 * 3 2 1 25 25 C 1.54474 * 101.76485 * 216.38801 * 24 3 2 26 26 N 1.46757 * 105.47502 * 25.42038 * 25 24 3 27 27 C 1.34422 * 111.29925 * 342.98125 * 26 25 24 28 28 O 1.21281 * 124.94275 * 180.45507 * 27 26 25 29 29 H 1.08992 * 109.47789 * 304.22501 * 1 2 3 30 30 H 1.09000 * 109.46844 * 64.22835 * 1 2 3 31 31 H 1.09007 * 109.46879 * 184.21849 * 1 2 3 32 32 H 1.08994 * 109.47610 * 239.99660 * 2 1 3 33 33 H 1.09003 * 109.46929 * 119.99063 * 2 1 3 34 34 H 0.97007 * 119.99972 * 354.94927 * 6 4 3 35 35 H 1.08994 * 109.47166 * 59.99955 * 7 6 4 36 36 H 1.08995 * 109.46840 * 300.00131 * 7 6 4 37 37 H 1.08993 * 109.46946 * 60.00240 * 8 7 6 38 38 H 1.09000 * 109.47106 * 299.99330 * 8 7 6 39 39 H 1.08999 * 109.47287 * 65.10502 * 9 8 7 40 40 H 1.09003 * 109.47369 * 305.09904 * 9 8 7 41 41 H 1.09000 * 110.72340 * 336.67460 * 12 10 9 42 42 H 1.08995 * 110.72528 * 99.77368 * 12 10 9 43 43 H 1.08998 * 111.00095 * 153.57458 * 13 12 10 44 44 H 1.08997 * 111.00420 * 277.42526 * 13 12 10 45 45 H 1.09001 * 110.38784 * 204.36947 * 14 13 12 46 46 H 1.08999 * 110.23679 * 82.11265 * 14 13 12 47 47 H 0.96997 * 120.00063 * 180.02562 * 19 18 16 48 48 H 1.09006 * 110.97127 * 334.51354 * 24 3 2 49 49 H 1.09002 * 110.96756 * 98.23272 * 24 3 2 50 50 H 1.09003 * 110.24795 * 144.41882 * 25 24 3 51 51 H 1.08993 * 110.24838 * 266.41358 * 25 24 3 52 52 H 0.97001 * 124.35244 * 162.98302 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4345 2.2145 -1.1439 5 8 0.7970 3.2229 -0.9248 6 7 1.6014 1.7847 -2.4102 7 6 0.9221 2.4706 -3.5122 8 6 1.2778 1.7876 -4.8344 9 6 0.5688 2.5044 -5.9854 10 6 0.8212 1.7469 -7.2905 11 1 0.5537 0.6974 -7.1675 12 6 2.3066 1.8662 -7.6915 13 6 2.2394 2.0110 -9.2350 14 6 0.9456 2.8396 -9.4155 15 7 0.0270 2.3416 -8.3755 16 6 -1.3397 2.4154 -8.4159 17 1 -1.9310 1.8868 -7.6829 18 6 -1.9652 3.1697 -9.3992 19 7 -1.2446 3.8144 -10.2922 20 14 -3.8296 3.2710 -9.4540 21 1 -4.3600 2.1764 -10.3058 22 1 -4.3734 3.1359 -8.0787 23 1 -4.2378 4.5815 -10.0210 24 6 3.5836 1.4709 -0.0850 25 6 3.9267 2.6761 0.8183 26 7 2.8034 2.7957 1.7551 27 6 1.7285 2.1172 1.3177 28 8 0.6637 2.0556 1.8951 29 1 -0.3634 0.5779 0.8496 30 1 -0.3633 0.4468 -0.9255 31 1 -0.3633 -1.0250 0.0756 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.1714 1.0211 -2.5921 35 1 1.2413 3.5123 -3.5436 36 1 -0.1560 2.4253 -3.3588 37 1 0.9582 0.7460 -4.8027 38 1 2.3559 1.8325 -4.9881 39 1 0.9552 3.5197 -6.0740 40 1 -0.5024 2.5392 -5.7869 41 1 2.7581 2.7499 -7.2407 42 1 2.8557 0.9679 -7.4093 43 1 3.1070 2.5503 -9.6149 44 1 2.1457 1.0369 -9.7151 45 1 0.5229 2.6728 -10.4063 46 1 1.1521 3.8990 -9.2636 47 1 -1.6817 4.3418 -10.9790 48 1 4.0131 0.5510 0.3120 49 1 3.9148 1.6434 -1.1090 50 1 4.8528 2.4885 1.3619 51 1 4.0170 3.5825 0.2198 52 1 2.8327 3.2996 2.5834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753030463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:07:53 Heat of formation + Delta-G solvation = -63.543804 kcal Electronic energy + Delta-G solvation = -30014.977816 eV Core-core repulsion = 26014.290232 eV Total energy + Delta-G solvation = -4000.687584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.63160 -39.06909 -37.83547 -36.70019 -35.57339 -34.77887 -32.87947 -32.08314 -30.50325 -29.40034 -28.29884 -27.59137 -24.94230 -24.17338 -23.26853 -22.84184 -21.76642 -21.46165 -20.14558 -19.50679 -19.10352 -17.89906 -17.56632 -16.73569 -16.30910 -15.94761 -15.40464 -15.23223 -14.99132 -14.73414 -14.48249 -14.22220 -14.00261 -13.83193 -13.64360 -13.51441 -13.39286 -12.88110 -12.77723 -12.33873 -12.13605 -12.08011 -12.03898 -11.89209 -11.73861 -11.51758 -11.46734 -11.22960 -11.04207 -10.79751 -10.73024 -10.57725 -10.08887 -10.02999 -9.98922 -9.86979 -9.76333 -9.58949 -9.56459 -9.47375 -9.18275 -8.56560 -6.78246 -5.69015 -3.04625 2.15994 2.37134 2.86890 3.17118 3.41560 3.47458 3.48872 3.69758 3.90420 4.12804 4.46142 4.50883 4.51730 4.70813 4.91279 4.97411 5.01830 5.10818 5.15590 5.22988 5.32784 5.36108 5.42018 5.46484 5.59067 5.61150 5.68667 5.72798 5.82666 5.85083 5.95183 6.02047 6.09358 6.20457 6.25585 6.34045 6.34930 6.39836 6.42496 6.57642 6.65684 6.69974 6.73931 6.95573 7.16972 7.28119 7.60470 7.63548 7.85304 7.92625 8.00344 8.33583 9.24203 9.85910 10.53173 11.41261 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016407 B = 0.002292 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.157786 B =12213.501900 C =13125.592555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.120 4.120 4 C 0.536 3.464 5 O -0.526 6.526 6 N -0.723 5.723 7 C 0.118 3.882 8 C -0.126 4.126 9 C -0.123 4.123 10 C 0.163 3.837 11 H 0.031 0.969 12 C -0.124 4.124 13 C -0.150 4.150 14 C 0.168 3.832 15 N -0.597 5.597 16 C -0.223 4.223 17 H 0.075 0.925 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.291 1.291 24 C -0.126 4.126 25 C 0.100 3.900 26 N -0.730 5.730 27 C 0.550 3.450 28 O -0.509 6.509 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.018 0.982 47 H 0.252 0.748 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.086 0.914 51 H 0.074 0.926 52 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.289 -7.855 20.277 27.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.133 4.133 3 C -0.127 4.127 4 C 0.320 3.680 5 O -0.401 6.401 6 N -0.375 5.375 7 C -0.005 4.005 8 C -0.164 4.164 9 C -0.163 4.163 10 C 0.055 3.945 11 H 0.048 0.952 12 C -0.162 4.162 13 C -0.189 4.189 14 C 0.043 3.957 15 N -0.321 5.321 16 C -0.352 4.352 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.206 1.206 23 H -0.217 1.217 24 C -0.164 4.164 25 C -0.025 4.025 26 N -0.387 5.387 27 C 0.334 3.666 28 O -0.383 6.383 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.036 0.964 47 H 0.062 0.938 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.104 0.896 51 H 0.093 0.907 52 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 15.033 -7.093 20.473 26.371 hybrid contribution -0.579 0.088 0.155 0.606 sum 14.454 -7.005 20.628 26.144 Atomic orbital electron populations 1.22008 0.94246 1.02536 1.04009 1.21411 0.97825 0.90847 1.03203 1.21767 0.97720 0.98864 0.94310 1.19614 0.80420 0.84647 0.83296 1.90786 1.40230 1.24737 1.84340 1.45988 1.50548 1.34794 1.06125 1.21551 0.97397 0.96733 0.84779 1.21827 1.01120 1.00131 0.93365 1.22040 1.00684 0.99469 0.94107 1.20909 0.90179 0.95162 0.88230 0.95180 1.22588 0.96499 1.00131 0.96969 1.22981 1.00081 1.00736 0.95072 1.21486 0.85647 0.93676 0.94884 1.44559 1.01704 1.69029 1.16823 1.18994 0.80347 1.23988 1.11841 0.90677 1.24824 0.97929 0.99046 0.98648 1.69926 1.33146 1.35469 1.18287 0.86159 0.85228 0.77032 0.77615 1.21659 1.20647 1.21700 1.22817 0.91868 0.99673 1.02067 1.22078 0.89854 0.98767 0.91787 1.46063 1.14126 1.53310 1.25162 1.19907 0.83280 0.78067 0.85358 1.90704 1.24568 1.61306 1.61693 0.89855 0.92643 0.92185 0.90427 0.90569 0.76625 0.91315 0.91308 0.91650 0.91692 0.92263 0.91590 0.92125 0.92668 0.92588 0.92516 0.90163 0.96379 0.93788 0.88432 0.88499 0.89594 0.90741 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.39 37.16 0.35 -1.44 16 2 C -0.09 -0.73 4.81 -26.73 -0.13 -0.86 16 3 C -0.12 -1.07 0.49 -155.67 -0.08 -1.15 16 4 C 0.54 6.47 5.07 -10.99 -0.06 6.42 16 5 O -0.53 -8.99 16.11 5.55 0.09 -8.90 16 6 N -0.72 -7.14 5.25 -60.30 -0.32 -7.46 16 7 C 0.12 1.46 5.68 -4.04 -0.02 1.44 16 8 C -0.13 -1.52 5.11 -26.73 -0.14 -1.66 16 9 C -0.12 -2.10 4.73 -26.73 -0.13 -2.22 16 10 C 0.16 3.16 3.15 -66.95 -0.21 2.94 16 11 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 12 C -0.12 -2.03 5.77 -24.89 -0.14 -2.18 16 13 C -0.15 -2.78 7.07 -24.69 -0.17 -2.95 16 14 C 0.17 4.04 5.51 -2.65 -0.01 4.02 16 15 N -0.60 -14.82 3.13 -162.71 -0.51 -15.33 16 16 C -0.22 -6.11 9.71 -15.06 -0.15 -6.26 16 17 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 18 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 19 N -0.92 -26.98 10.38 55.49 0.58 -26.40 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 C -0.13 -0.60 6.21 -25.10 -0.16 -0.75 16 25 C 0.10 0.50 7.78 -3.13 -0.02 0.47 16 26 N -0.73 -5.86 6.24 -59.21 -0.37 -6.23 16 27 C 0.55 6.42 6.44 -10.86 -0.07 6.35 16 28 O -0.51 -7.96 15.56 5.56 0.09 -7.87 16 29 H 0.08 1.10 5.69 -51.93 -0.30 0.81 16 30 H 0.05 0.65 7.28 -51.93 -0.38 0.28 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.41 7.81 -51.93 -0.41 0.00 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.40 2.66 8.01 -40.82 -0.33 2.33 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 39 H 0.06 1.08 8.00 -51.93 -0.42 0.66 16 40 H 0.07 1.27 7.81 -51.93 -0.41 0.87 16 41 H 0.06 0.95 7.76 -51.93 -0.40 0.54 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.08 2.17 6.56 -51.93 -0.34 1.83 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 48 H 0.10 0.25 7.92 -51.93 -0.41 -0.16 16 49 H 0.10 0.35 7.66 -51.93 -0.40 -0.05 16 50 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 51 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.41 2.67 8.96 -40.82 -0.37 2.30 16 LS Contribution 404.93 15.07 6.10 6.10 Total: -1.00 -35.93 404.93 -9.76 -45.69 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -9.16 Total: 1.35 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.23 Total: 1.85 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.62 Total: -55.42 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.18 Total: -16.77 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.93 -9.76 -45.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753030463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.856 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds