Wall clock time and date at job start Sat Apr 11 2020 05:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47140 * 2 1 4 4 C 1.50699 * 115.55238 * 294.73037 * 3 2 1 5 5 O 1.21282 * 119.99669 * 99.97307 * 4 3 2 6 6 N 1.34776 * 120.00061 * 279.97483 * 4 3 2 7 7 C 1.47025 * 125.64848 * 354.94306 * 6 4 3 8 8 C 1.54366 * 107.28797 * 181.12924 * 7 6 4 9 9 C 1.55156 * 102.92187 * 22.14174 * 8 7 6 10 10 H 1.09003 * 111.00770 * 82.63468 * 9 8 7 11 11 C 1.52997 * 111.00535 * 206.45380 * 9 8 7 12 12 C 1.53002 * 109.46946 * 290.41255 * 11 9 8 13 13 N 1.46902 * 109.47254 * 179.97438 * 12 11 9 14 14 C 1.46892 * 111.00367 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47308 * 180.02562 * 14 13 12 16 16 O 1.21286 * 120.00227 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99944 * 180.02562 * 15 14 13 18 18 C 1.37092 * 119.99841 * 180.02562 * 17 15 14 19 19 H 1.07996 * 120.00305 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99927 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99808 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00112 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46664 * 59.99915 * 22 20 18 24 24 H 1.48491 * 109.47176 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47135 * 300.00283 * 22 20 18 26 26 C 1.47426 * 125.64784 * 174.99099 * 6 4 3 27 27 C 1.53006 * 117.51351 * 80.43346 * 3 2 1 28 28 C 1.53001 * 117.49353 * 149.05999 * 3 2 1 29 29 H 1.09000 * 109.46775 * 295.69080 * 1 2 3 30 30 H 1.09005 * 109.46776 * 55.69193 * 1 2 3 31 31 H 1.08997 * 109.47016 * 175.68665 * 1 2 3 32 32 H 1.09001 * 109.46911 * 239.99964 * 2 1 3 33 33 H 1.08999 * 109.46934 * 120.00200 * 2 1 3 34 34 H 1.09003 * 109.87892 * 300.51901 * 7 6 4 35 35 H 1.08995 * 109.88025 * 61.67621 * 7 6 4 36 36 H 1.08995 * 110.70728 * 263.79378 * 8 7 6 37 37 H 1.09004 * 110.75301 * 140.50317 * 8 7 6 38 38 H 1.09000 * 109.47307 * 170.41817 * 11 9 8 39 39 H 1.09004 * 109.47342 * 50.41495 * 11 9 8 40 40 H 1.09000 * 109.46658 * 60.00165 * 12 11 9 41 41 H 1.08991 * 109.47428 * 300.00448 * 12 11 9 42 42 H 1.00906 * 110.99733 * 56.04709 * 13 12 11 43 43 H 1.09003 * 109.47066 * 60.00159 * 14 13 12 44 44 H 1.09001 * 109.47060 * 300.00599 * 14 13 12 45 45 H 0.96999 * 119.99610 * 359.97438 * 17 15 14 46 46 H 0.97001 * 119.99963 * 179.97438 * 21 20 18 47 47 H 1.08994 * 110.36617 * 36.99247 * 26 6 4 48 48 H 1.09005 * 110.45489 * 274.71732 * 26 6 4 49 49 H 1.09003 * 117.49436 * 214.96585 * 27 3 2 50 50 H 1.08992 * 117.50101 * 359.97438 * 27 3 2 51 51 H 1.08989 * 117.50491 * 359.97438 * 28 3 2 52 52 H 1.09005 * 117.49570 * 144.97684 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7205 2.2450 -1.2349 5 8 0.7917 3.0248 -1.2277 6 7 2.4668 2.0959 -2.3472 7 6 3.6776 1.2700 -2.4624 8 6 4.2054 1.4283 -3.9044 9 6 3.5830 2.7759 -4.3557 10 1 4.1777 3.6186 -4.0030 11 6 3.4191 2.8225 -5.8762 12 6 4.7972 2.9079 -6.5353 13 7 4.6399 2.9519 -7.9952 14 6 5.9456 3.0338 -8.6632 15 6 5.7443 3.0777 -10.1560 16 8 4.6234 3.0445 -10.6180 17 7 6.8099 3.1538 -10.9777 18 6 6.6268 3.1942 -12.3358 19 1 5.6287 3.1647 -12.7472 20 6 7.7254 3.2732 -13.1830 21 7 8.9398 3.3096 -12.6823 22 14 7.4759 3.3275 -15.0334 23 1 6.6627 4.5184 -15.3884 24 1 8.7958 3.4109 -15.7086 25 1 6.7706 2.0972 -15.4741 26 6 2.2047 2.7350 -3.6497 27 6 2.0630 2.1841 1.3381 28 6 3.3730 1.7204 0.6978 29 1 -0.3633 0.4455 0.9261 30 1 -0.3633 0.5793 -0.8489 31 1 -0.3633 -1.0247 -0.0773 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.4301 1.6143 -1.7529 35 1 3.4335 0.2254 -2.2692 36 1 3.8549 0.6112 -4.5350 37 1 5.2940 1.4841 -3.9133 38 1 2.8298 3.6972 -6.1515 39 1 2.9098 1.9201 -6.2145 40 1 5.3864 2.0332 -6.2599 41 1 5.3065 3.8102 -6.1970 42 1 4.0433 3.7174 -8.2717 43 1 6.5426 2.1600 -8.4022 44 1 6.4631 3.9371 -8.3399 45 1 7.7064 3.1807 -10.6082 46 1 9.7068 3.3644 -13.2737 47 1 1.8217 3.7453 -3.5063 48 1 1.4986 2.1411 -4.2302 49 1 1.8470 3.2524 1.3252 50 1 1.7144 1.6445 2.2186 51 1 3.8864 0.8758 1.1572 52 1 4.0190 2.4835 0.2634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754930184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:09:02 Heat of formation + Delta-G solvation = -60.128878 kcal Electronic energy + Delta-G solvation = -28461.207462 eV Core-core repulsion = 24460.667960 eV Total energy + Delta-G solvation = -4000.539502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.82977 -38.74510 -38.22384 -37.08827 -35.83136 -33.93186 -32.97058 -32.37418 -31.22060 -30.13159 -28.80325 -26.37657 -25.07472 -24.11924 -23.62755 -22.83213 -22.43564 -21.62272 -20.53106 -19.23941 -18.98050 -17.88725 -17.11993 -16.68578 -16.22895 -16.15040 -15.68218 -15.36296 -14.86664 -14.60195 -14.47482 -14.23734 -14.17477 -13.90754 -13.81859 -13.56456 -13.43118 -13.21954 -12.88647 -12.77590 -12.54418 -12.20267 -12.12135 -12.00395 -11.94150 -11.68855 -11.61873 -11.54305 -11.37329 -11.12868 -11.01803 -10.93541 -10.87235 -10.67343 -10.49922 -10.44186 -10.21221 -9.99527 -9.50015 -8.97603 -8.46291 -8.05691 -7.95801 -6.41697 -3.82526 2.26210 2.54718 3.18632 3.20320 3.25898 3.30443 3.90535 3.91592 4.04975 4.11704 4.21321 4.27897 4.31950 4.40457 4.45103 4.65172 4.86269 4.88850 4.96058 5.01591 5.04729 5.09001 5.10591 5.14005 5.22411 5.25648 5.28018 5.38410 5.43609 5.45104 5.47546 5.52698 5.55974 5.61188 5.63234 5.64540 5.66482 5.75312 5.83628 5.87917 5.97369 5.98631 6.05086 6.17641 6.27778 7.16310 7.22722 7.55049 7.66654 7.83953 8.06278 8.61490 9.17877 9.54364 10.06030 10.75966 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036156 B = 0.001461 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.226587 B =19156.936594 C =19372.754250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.077 4.077 3 C -0.152 4.152 4 C 0.567 3.433 5 O -0.536 6.536 6 N -0.614 5.614 7 C 0.102 3.898 8 C -0.130 4.130 9 C -0.097 4.097 10 H 0.084 0.916 11 C -0.107 4.107 12 C 0.061 3.939 13 N -0.671 5.671 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.109 3.891 27 C -0.144 4.144 28 C -0.164 4.164 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.025 0.975 42 H 0.349 0.651 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.100 0.900 50 H 0.104 0.896 51 H 0.104 0.896 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 -5.595 29.380 30.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.155 4.155 4 C 0.355 3.645 5 O -0.412 6.412 6 N -0.348 5.348 7 C -0.021 4.021 8 C -0.167 4.167 9 C -0.117 4.117 10 H 0.103 0.897 11 C -0.145 4.145 12 C -0.069 4.069 13 N -0.303 5.303 14 C -0.081 4.081 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.014 4.014 27 C -0.182 4.182 28 C -0.201 4.201 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.168 0.832 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.118 0.882 50 H 0.122 0.878 51 H 0.123 0.877 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.640 -5.861 28.964 30.788 hybrid contribution 0.949 0.926 -0.552 1.437 sum -7.691 -4.934 28.412 29.845 Atomic orbital electron populations 1.21732 0.94838 1.01644 1.02656 1.20993 0.96597 0.91164 1.02689 1.21440 1.03759 0.97609 0.92727 1.19176 0.81300 0.81717 0.82349 1.90712 1.30051 1.37128 1.83320 1.48438 1.27672 1.48089 1.10624 1.22114 0.86595 0.95236 0.98181 1.22786 1.01356 0.98083 0.94507 1.22353 0.95518 0.98103 0.95729 0.89739 1.21477 0.97717 1.03501 0.91787 1.21942 0.96506 1.00266 0.88154 1.60062 1.13277 1.52363 1.04613 1.21658 0.91303 1.00936 0.94246 1.19828 0.85746 0.84434 0.87436 1.90520 1.23785 1.55398 1.77050 1.41858 1.07491 1.64204 1.06493 1.19665 0.94962 1.47513 0.80878 0.87969 1.25260 0.94607 0.97295 1.00742 1.69605 0.97923 1.50435 1.36394 0.85911 0.77255 0.79077 0.81934 1.19927 1.20981 1.19877 1.22322 0.97290 0.98870 0.82881 1.22997 0.99835 1.01122 0.94200 1.23146 0.90225 1.03798 1.02916 0.92350 0.92465 0.92389 0.91225 0.90771 0.91262 0.91284 0.89878 0.89665 0.91461 0.90378 0.91058 0.95678 0.83185 0.89661 0.93965 0.77467 0.91835 0.90338 0.90995 0.88157 0.87799 0.87715 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.84 37.16 0.37 -0.70 16 2 C -0.08 -0.47 5.81 -26.73 -0.16 -0.62 16 3 C -0.15 -1.13 1.24 -155.66 -0.19 -1.33 16 4 C 0.57 6.02 6.32 -10.99 -0.07 5.95 16 5 O -0.54 -7.80 17.23 5.56 0.10 -7.70 16 6 N -0.61 -5.51 3.33 -170.49 -0.57 -6.08 16 7 C 0.10 0.64 6.20 -3.04 -0.02 0.62 16 8 C -0.13 -0.82 5.75 -24.87 -0.14 -0.97 16 9 C -0.10 -0.75 3.03 -88.47 -0.27 -1.02 16 10 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 11 C -0.11 -1.00 4.98 -26.73 -0.13 -1.13 16 12 C 0.06 0.68 5.56 -3.82 -0.02 0.66 16 13 N -0.67 -10.56 6.13 -115.07 -0.70 -11.26 16 14 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 15 C 0.44 10.41 7.82 -10.98 -0.09 10.32 16 16 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 17 N -0.56 -14.30 5.29 -10.97 -0.06 -14.36 16 18 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 22 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.11 0.98 6.40 -2.53 -0.02 0.97 16 27 C -0.14 -0.95 9.88 -26.73 -0.26 -1.22 16 28 C -0.16 -0.89 8.85 -26.73 -0.24 -1.13 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 7.59 -51.93 -0.39 0.14 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.41 7.37 -51.93 -0.38 0.02 16 33 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.07 0.37 7.03 -51.93 -0.37 0.01 16 35 H 0.07 0.38 7.37 -51.93 -0.38 0.00 16 36 H 0.08 0.55 7.96 -51.93 -0.41 0.14 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 40 H 0.07 0.75 7.63 -51.93 -0.40 0.35 16 41 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.35 5.71 8.43 -39.29 -0.33 5.38 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.08 0.80 7.99 -51.93 -0.41 0.39 16 48 H 0.07 0.66 8.03 -51.93 -0.42 0.25 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.10 0.39 8.14 -51.94 -0.42 -0.03 16 52 H 0.10 0.56 7.73 -51.93 -0.40 0.15 16 LS Contribution 420.89 15.07 6.34 6.34 Total: -1.00 -33.54 420.89 -9.83 -43.38 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -9.22 Total: 10.02 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -1.51 Total: 3.23 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.61 Total: -55.45 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.18 Total: -23.53 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.54 -9.83 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754930184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.751 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds