Wall clock time and date at job start Sat Apr 11 2020 05:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47087 * 2 1 4 4 C 1.50695 * 112.84994 * 300.40980 * 3 2 1 5 5 O 1.21282 * 120.00201 * 106.74364 * 4 3 2 6 6 N 1.34782 * 120.00059 * 286.73754 * 4 3 2 7 7 C 1.48138 * 127.83674 * 355.04979 * 6 4 3 8 8 C 1.54389 * 104.61651 * 140.40563 * 7 6 4 9 9 H 1.09003 * 110.33896 * 142.73548 * 8 7 6 10 10 C 1.52997 * 110.43550 * 264.94994 * 8 7 6 11 11 C 1.54280 * 104.96067 * 23.86695 * 8 7 6 12 12 H 1.09007 * 110.34527 * 118.97090 * 11 8 7 13 13 N 1.46896 * 110.34562 * 241.12638 * 11 8 7 14 14 C 1.46893 * 111.00471 * 203.52327 * 13 11 8 15 15 C 1.50698 * 109.47383 * 179.97438 * 14 13 11 16 16 O 1.21292 * 120.00008 * 359.72544 * 15 14 13 17 17 N 1.34780 * 120.00144 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99946 * 179.72329 * 17 15 14 19 19 H 1.07994 * 120.00277 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99968 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00262 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46808 * 59.99940 * 22 20 18 24 24 H 1.48491 * 109.47222 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46911 * 300.00486 * 22 20 18 26 26 C 1.48418 * 127.82001 * 175.07015 * 6 4 3 27 27 C 1.53787 * 113.69165 * 71.68107 * 3 2 1 28 28 C 1.53781 * 87.08120 * 89.12387 * 27 3 2 29 29 C 1.53782 * 87.08385 * 25.43461 * 28 27 3 30 30 H 1.08998 * 109.47425 * 185.53138 * 1 2 3 31 31 H 1.09000 * 109.47062 * 305.53143 * 1 2 3 32 32 H 1.09000 * 109.46716 * 65.53177 * 1 2 3 33 33 H 1.08993 * 109.47413 * 239.99977 * 2 1 3 34 34 H 1.08995 * 109.47160 * 119.99833 * 2 1 3 35 35 H 1.08999 * 110.40966 * 21.62514 * 7 6 4 36 36 H 1.09001 * 110.41027 * 259.18805 * 7 6 4 37 37 H 1.08997 * 109.47617 * 175.59366 * 10 8 7 38 38 H 1.09007 * 109.46914 * 295.58872 * 10 8 7 39 39 H 1.08998 * 109.46706 * 55.58377 * 10 8 7 40 40 H 1.00904 * 110.99523 * 79.57206 * 13 11 8 41 41 H 1.09006 * 109.46976 * 59.99747 * 14 13 11 42 42 H 1.09000 * 109.47471 * 300.00458 * 14 13 11 43 43 H 0.97003 * 119.99865 * 359.73236 * 17 15 14 44 44 H 0.97005 * 119.99684 * 179.97438 * 21 20 18 45 45 H 1.09004 * 110.44789 * 100.86000 * 26 6 4 46 46 H 1.08996 * 110.49646 * 338.34145 * 26 6 4 47 47 H 1.09002 * 113.61382 * 203.67731 * 27 3 2 48 48 H 1.09003 * 113.60922 * 334.57751 * 27 3 2 49 49 H 1.09000 * 113.61600 * 270.88421 * 28 27 3 50 50 H 1.09003 * 113.61366 * 139.98129 * 28 27 3 51 51 H 1.08998 * 113.61330 * 220.01957 * 29 28 27 52 52 H 1.09002 * 113.68935 * 89.12101 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5723 2.2285 -1.1976 5 8 0.7153 3.0771 -1.0692 6 7 2.1065 1.9887 -2.4116 7 6 3.2223 1.0745 -2.7489 8 6 2.7987 0.4174 -4.0802 9 1 3.6645 0.2830 -4.7287 10 6 2.1171 -0.9273 -3.8191 11 6 1.8021 1.4095 -4.7148 12 1 2.1775 1.7612 -5.6759 13 7 0.4873 0.7762 -4.8818 14 6 -0.2867 1.4406 -5.9388 15 6 -1.6259 0.7645 -6.0813 16 8 -1.9060 -0.1813 -5.3755 17 7 -2.5106 1.2076 -6.9965 18 6 -3.7267 0.5890 -7.1300 19 1 -3.9761 -0.2531 -6.5016 20 6 -4.6385 1.0455 -8.0739 21 7 -4.3349 2.0699 -8.8390 22 14 -6.2959 0.2030 -8.2553 23 1 -7.0368 0.2865 -6.9711 24 1 -7.0785 0.8750 -9.3235 25 1 -6.0896 -1.2228 -8.6159 26 6 1.7102 2.5811 -3.7135 27 6 1.8287 2.1727 1.3369 28 6 3.2039 1.6303 1.7604 29 6 3.5504 1.5619 0.2637 30 1 -0.3634 -1.0228 0.0991 31 1 -0.3633 0.5972 0.8363 32 1 -0.3633 0.4257 -0.9354 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.3420 0.3184 -1.9730 36 1 4.1474 1.6359 -2.8797 37 1 1.7553 -1.3402 -4.7607 38 1 2.8330 -1.6166 -3.3713 39 1 1.2776 -0.7830 -3.1391 40 1 -0.0229 0.7673 -4.0113 41 1 0.2555 1.3746 -6.8822 42 1 -0.4342 2.4884 -5.6772 43 1 -2.2867 1.9642 -7.5609 44 1 -4.9714 2.3883 -9.4982 45 1 2.3997 3.3769 -3.9953 46 1 0.6896 2.9607 -3.6652 47 1 1.7978 3.2581 1.2415 48 1 1.0021 1.7748 1.9257 49 1 3.1585 0.6540 2.2431 50 1 3.8053 2.3504 2.3153 51 1 4.1138 0.6710 -0.0137 52 1 3.9905 2.4797 -0.1263 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755113872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:09:18 Heat of formation + Delta-G solvation = -73.030966 kcal Electronic energy + Delta-G solvation = -30944.279053 eV Core-core repulsion = 26943.180074 eV Total energy + Delta-G solvation = -4001.098978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.95045 -40.41044 -39.67970 -38.37445 -36.16229 -35.42010 -33.39014 -33.33869 -33.07595 -30.35223 -28.33591 -27.21937 -27.00654 -26.49544 -25.64502 -24.23594 -23.36014 -21.24347 -21.01959 -20.56754 -19.96580 -19.39657 -18.00055 -17.61686 -17.45370 -16.99393 -16.69456 -16.40802 -16.18117 -15.95938 -15.46035 -15.35298 -15.17800 -14.98523 -14.48070 -14.40847 -14.14294 -13.97297 -13.65530 -13.57667 -13.36686 -13.29525 -13.20291 -13.10371 -12.86581 -12.82041 -12.65099 -12.46486 -12.41202 -12.24097 -12.15428 -12.06139 -11.91177 -11.72875 -11.53180 -11.50381 -11.28101 -11.08330 -10.54720 -10.37795 -10.04474 -9.85714 -9.23654 -8.49176 -5.98097 1.37196 1.38671 1.49972 1.60148 1.96631 2.02923 2.26746 2.88885 3.17782 3.34816 3.41234 3.48200 3.60323 3.65983 3.75977 3.87384 3.99311 4.14230 4.22134 4.28585 4.32809 4.36096 4.41862 4.45634 4.48333 4.52352 4.60131 4.67611 4.70633 4.78321 4.79761 4.84158 4.87192 4.96290 4.98817 5.01401 5.08845 5.12858 5.18309 5.26068 5.29234 5.31381 5.37652 5.41249 5.50885 5.71623 5.89808 6.11077 6.25555 6.57291 6.58728 7.09751 7.15173 7.53228 8.08833 8.68117 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.002613 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.796816 B =10715.078461 C =11239.641649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.102 4.102 4 C 0.541 3.459 5 O -0.598 6.598 6 N -0.617 5.617 7 C 0.101 3.899 8 C -0.089 4.089 9 H 0.118 0.882 10 C -0.119 4.119 11 C 0.075 3.925 12 H 0.116 0.884 13 N -0.657 5.657 14 C 0.061 3.939 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.268 1.268 25 H -0.270 1.270 26 C 0.071 3.929 27 C -0.125 4.125 28 C -0.125 4.125 29 C -0.116 4.116 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.335 0.665 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.102 0.898 50 H 0.080 0.920 51 H 0.102 0.898 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.916 -1.275 15.509 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.105 4.105 4 C 0.331 3.669 5 O -0.479 6.479 6 N -0.349 5.349 7 C -0.020 4.020 8 C -0.108 4.108 9 H 0.136 0.864 10 C -0.177 4.177 11 C -0.036 4.036 12 H 0.134 0.866 13 N -0.287 5.287 14 C -0.071 4.071 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.211 5.211 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.193 1.193 25 H -0.195 1.195 26 C -0.054 4.054 27 C -0.163 4.163 28 C -0.162 4.162 29 C -0.153 4.153 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.073 0.927 43 H 0.230 0.770 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.121 0.879 50 H 0.099 0.901 51 H 0.121 0.879 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.360 -1.834 15.554 28.124 hybrid contribution -1.933 1.378 -0.352 2.400 sum 21.427 -0.455 15.202 26.276 Atomic orbital electron populations 1.21735 0.97022 1.01953 1.00289 1.21332 0.94748 0.91950 1.04457 1.22262 0.99822 0.96602 0.91781 1.20811 0.79997 0.82350 0.83695 1.90676 1.34792 1.36881 1.85528 1.49072 1.36039 1.44273 1.05564 1.22904 0.88969 0.92898 0.97268 1.22207 0.97975 0.94518 0.96112 0.86426 1.21443 0.99149 0.95769 1.01295 1.22808 0.89898 0.92009 0.98836 0.86627 1.60378 1.03978 1.54473 1.09866 1.21624 0.91520 0.95609 0.98340 1.20902 0.87552 0.86416 0.82683 1.90488 1.79969 1.32090 1.48415 1.41929 1.14535 1.30915 1.33692 1.19614 0.92977 1.14378 1.19486 0.90485 1.26052 1.03093 0.96989 0.95147 1.69670 1.38273 1.25591 1.22580 0.84997 0.76935 0.78331 0.78130 1.19925 1.19279 1.19498 1.23205 1.00377 0.97755 0.84025 1.22887 0.99620 0.99429 0.94356 1.22818 0.94822 1.02604 0.95981 1.23021 0.91656 1.03653 0.96968 0.91302 0.92820 0.96402 0.90346 0.87817 0.88300 0.88199 0.93473 0.91407 0.95225 0.84657 0.86838 0.92678 0.77004 0.91250 0.88776 0.93763 0.91717 0.91162 0.87910 0.90143 0.87933 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.55 71.98 0.69 -2.92 16 2 C -0.09 -1.46 5.18 30.59 0.16 -1.30 16 3 C -0.10 -1.88 0.30 -52.40 -0.02 -1.89 16 4 C 0.54 14.65 5.89 87.65 0.52 15.16 16 5 O -0.60 -22.63 16.66 -3.03 -0.05 -22.68 16 6 N -0.62 -13.54 3.32 -807.26 -2.68 -16.22 16 7 C 0.10 1.32 5.70 86.54 0.49 1.81 16 8 C -0.09 -1.37 3.65 -9.89 -0.04 -1.41 16 9 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 10 C -0.12 -2.43 8.10 71.98 0.58 -1.85 16 11 C 0.08 1.59 3.35 45.82 0.15 1.75 16 12 H 0.12 1.98 7.84 -2.38 -0.02 1.96 16 13 N -0.66 -20.65 4.12 -490.91 -2.02 -22.67 16 14 C 0.06 2.15 6.01 85.56 0.51 2.67 16 15 C 0.44 21.55 7.82 87.66 0.69 22.24 16 16 O -0.62 -35.77 15.78 -3.07 -0.05 -35.81 16 17 N -0.57 -30.46 5.29 -306.99 -1.62 -32.08 16 18 C -0.33 -19.64 9.68 84.04 0.81 -18.82 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 21 N -0.92 -50.86 13.05 21.66 0.28 -50.57 16 22 Si 0.99 44.11 29.55 68.60 2.03 46.14 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 C 0.07 1.65 6.48 86.48 0.56 2.21 16 27 C -0.12 -2.31 6.70 31.12 0.21 -2.11 16 28 C -0.13 -1.32 7.73 31.12 0.24 -1.08 16 29 C -0.12 -1.29 5.72 31.12 0.18 -1.11 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.27 7.03 -2.39 -0.02 1.26 16 32 H 0.02 0.54 7.60 -2.39 -0.02 0.52 16 33 H 0.08 1.24 6.53 -2.39 -0.02 1.22 16 34 H 0.10 1.16 7.30 -2.39 -0.02 1.14 16 35 H 0.10 1.03 4.61 -2.39 -0.01 1.02 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 1.22 7.84 -2.39 -0.02 1.20 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.03 0.76 7.33 -2.39 -0.02 0.74 16 40 H 0.33 12.53 7.71 -89.69 -0.69 11.84 16 41 H 0.11 3.41 8.07 -2.38 -0.02 3.39 16 42 H 0.06 1.81 7.96 -2.39 -0.02 1.79 16 43 H 0.40 19.95 7.90 -92.71 -0.73 19.22 16 44 H 0.28 14.38 8.31 -92.70 -0.77 13.61 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.04 1.37 7.64 -2.39 -0.02 1.35 16 47 H 0.06 1.48 7.87 -2.39 -0.02 1.46 16 48 H 0.07 1.32 7.13 -2.39 -0.02 1.30 16 49 H 0.10 0.75 7.60 -2.39 -0.02 0.73 16 50 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.10 0.64 7.50 -2.39 -0.02 0.63 16 52 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 Total: -1.00 -78.38 404.34 1.60 -76.78 By element: Atomic # 1 Polarization: 44.52 SS G_CDS: -0.49 Total: 44.03 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 6.21 Total: 13.09 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.05 Total: -121.55 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -0.10 Total: -58.50 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -78.38 1.60 -76.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755113872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.754 kcal (2) G-P(sol) polarization free energy of solvation -78.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds