Wall clock time and date at job start Sat Apr 11 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.36789 * 2 1 4 4 C 1.54375 * 110.32690 * 237.81949 * 2 1 3 5 5 N 1.48562 * 104.59610 * 264.96049 * 4 2 1 6 6 C 1.46905 * 110.99863 * 200.95997 * 5 4 2 7 7 C 1.50697 * 109.46769 * 189.99643 * 6 5 4 8 8 O 1.21294 * 120.00576 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99667 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99870 * 179.97438 * 9 7 6 11 11 H 1.08006 * 119.99925 * 359.97438 * 10 9 7 12 12 C 1.38942 * 120.00015 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00364 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00272 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47101 * 59.99455 * 14 12 10 16 16 H 1.48499 * 109.47603 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47164 * 300.00014 * 14 12 10 18 18 C 1.48727 * 104.28304 * 320.56847 * 5 4 2 19 19 C 1.54263 * 110.32287 * 122.17845 * 2 1 3 20 20 H 1.08994 * 110.32423 * 359.90499 * 19 2 1 21 21 N 1.46499 * 110.32494 * 237.79365 * 19 2 1 22 22 C 1.34777 * 119.99665 * 156.70767 * 21 19 2 23 23 O 1.21283 * 119.99990 * 359.71991 * 22 21 19 24 24 C 1.50698 * 119.99538 * 179.72653 * 22 21 19 25 25 C 1.52999 * 109.47004 * 179.97438 * 24 22 21 26 26 C 1.53781 * 113.61674 * 272.49650 * 25 24 22 27 27 C 1.53779 * 87.08017 * 220.01694 * 26 25 24 28 28 C 1.53781 * 87.08448 * 25.43118 * 27 26 25 29 29 H 1.08996 * 109.47060 * 297.81260 * 1 2 3 30 30 H 1.08992 * 109.47050 * 57.81770 * 1 2 3 31 31 H 1.08999 * 109.46589 * 177.82082 * 1 2 3 32 32 H 1.08997 * 109.47249 * 182.17993 * 3 2 1 33 33 H 1.08998 * 109.47180 * 302.18453 * 3 2 1 34 34 H 1.09007 * 109.47058 * 62.18124 * 3 2 1 35 35 H 1.09005 * 110.40604 * 23.72927 * 4 2 1 36 36 H 1.08997 * 110.41437 * 146.05751 * 4 2 1 37 37 H 1.08995 * 109.46952 * 309.99349 * 6 5 4 38 38 H 1.08998 * 109.46708 * 69.99709 * 6 5 4 39 39 H 0.96990 * 119.99973 * 359.97438 * 9 7 6 40 40 H 0.96997 * 120.00468 * 179.97438 * 13 12 10 41 41 H 1.08998 * 110.38866 * 280.64486 * 18 5 4 42 42 H 1.09004 * 110.50774 * 158.15100 * 18 5 4 43 43 H 0.97001 * 119.99790 * 336.42480 * 21 19 2 44 44 H 1.09003 * 109.47112 * 299.99065 * 24 22 21 45 45 H 1.08993 * 109.47916 * 59.99687 * 24 22 21 46 46 H 1.09006 * 112.85050 * 43.80561 * 25 24 22 47 47 H 1.09001 * 113.61018 * 334.56510 * 26 25 24 48 48 H 1.09000 * 113.61309 * 105.46581 * 26 25 24 49 49 H 1.08998 * 113.61417 * 270.87811 * 27 26 25 50 50 H 1.09003 * 113.61556 * 139.98105 * 27 26 25 51 51 H 1.08992 * 113.61389 * 220.01884 * 28 27 26 52 52 H 1.08999 * 113.61240 * 89.11265 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 6 2.0663 -0.7710 -1.2252 5 7 2.3148 -2.1467 -0.7225 6 6 3.2651 -2.8594 -1.5869 7 6 3.3059 -4.3142 -1.1960 8 8 2.6121 -4.7177 -0.2866 9 7 4.1142 -5.1670 -1.8564 10 6 4.1518 -6.4904 -1.5004 11 1 3.5339 -6.8496 -0.6906 12 6 4.9846 -7.3696 -2.1815 13 7 5.7360 -6.9328 -3.1672 14 14 5.0353 -9.1730 -1.6971 15 1 3.6828 -9.7659 -1.8537 16 1 5.9964 -9.8934 -2.5704 17 1 5.4675 -9.2934 -0.2815 18 6 2.8802 -1.9436 0.6380 19 6 2.0658 -0.7704 1.2244 20 1 1.2389 -1.1471 1.8262 21 7 2.9292 0.0947 2.0321 22 6 3.1231 -0.1768 3.3379 23 8 2.5788 -1.1345 3.8454 24 6 4.0161 0.7096 4.1672 25 6 4.0640 0.1845 5.6035 26 6 2.9390 0.7321 6.4975 27 6 3.9880 0.8404 7.6167 28 6 5.0466 0.9488 6.5064 29 1 -0.3633 0.4795 0.9089 30 1 -0.3633 0.5473 -0.8697 31 1 -0.3632 -1.0269 -0.0391 32 1 3.1517 1.4176 -0.0391 33 1 1.6759 1.9655 -0.8697 34 1 1.7394 1.9419 0.9090 35 1 1.3213 -0.7859 -2.0208 36 1 2.9931 -0.3213 -1.5816 37 1 2.9478 -2.7711 -2.6259 38 1 4.2577 -2.4242 -1.4717 39 1 4.6693 -4.8443 -2.5833 40 1 6.3177 -7.5465 -3.6424 41 1 3.9358 -1.6796 0.5751 42 1 2.7469 -2.8395 1.2446 43 1 3.3645 0.8606 1.6261 44 1 5.0214 0.7086 3.7460 45 1 3.6224 1.7259 4.1653 46 1 4.1762 -0.8986 5.6547 47 1 2.5502 1.6959 6.1688 48 1 2.1530 0.0058 6.7045 49 1 4.0784 -0.0633 8.2194 50 1 3.8926 1.7440 8.2188 51 1 5.9620 0.3974 6.7207 52 1 5.2339 1.9718 6.1802 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755407078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:09:41 Heat of formation + Delta-G solvation = -75.309122 kcal Electronic energy + Delta-G solvation = -29978.096758 eV Core-core repulsion = 25976.898992 eV Total energy + Delta-G solvation = -4001.197767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 4.15 seconds Orbital eigenvalues (eV) -41.64333 -40.51269 -39.75168 -38.87006 -36.20870 -35.62151 -34.30876 -33.28813 -31.75829 -30.18420 -28.59779 -28.16599 -26.74622 -26.44981 -25.42592 -24.27046 -22.66377 -21.30599 -21.07675 -20.28359 -20.13095 -19.80896 -18.21912 -17.69325 -17.40756 -16.66864 -16.59729 -16.43808 -16.31996 -15.86337 -15.68078 -15.45080 -15.17882 -15.01294 -14.97484 -14.36399 -14.12714 -14.07073 -13.79589 -13.52739 -13.44598 -13.27583 -13.07102 -13.01215 -12.81596 -12.77816 -12.62323 -12.46242 -12.39257 -12.28524 -12.14668 -11.85951 -11.76313 -11.57942 -11.52036 -11.48554 -11.23884 -11.06529 -10.76920 -10.35864 -10.10893 -10.02704 -9.38854 -8.48689 -5.97366 1.36935 1.38227 1.49411 1.67730 2.03759 2.14001 2.27369 2.85259 3.17067 3.32224 3.46604 3.60493 3.64908 3.75302 3.81903 3.89288 4.00366 4.09774 4.14355 4.21499 4.27882 4.35912 4.38582 4.48971 4.49706 4.57044 4.67616 4.72955 4.75925 4.79038 4.84545 4.87986 4.91554 5.00129 5.01162 5.03033 5.06122 5.09902 5.18164 5.18587 5.33127 5.37988 5.40387 5.42793 5.46233 5.64876 5.80279 5.91731 6.07182 6.58539 6.59526 7.11311 7.32807 7.54302 8.11895 8.68615 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.002655 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.719721 B =10545.301122 C =12501.617714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.140 4.140 4 C 0.038 3.962 5 N -0.507 5.507 6 C 0.050 3.950 7 C 0.438 3.562 8 O -0.619 6.619 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.073 0.927 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.266 1.266 17 H -0.274 1.274 18 C 0.038 3.962 19 C 0.157 3.843 20 H 0.066 0.934 21 N -0.711 5.711 22 C 0.501 3.499 23 O -0.588 6.588 24 C -0.121 4.121 25 C -0.107 4.107 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.125 4.125 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.044 0.956 42 H 0.039 0.961 43 H 0.418 0.582 44 H 0.116 0.884 45 H 0.127 0.873 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.042 0.958 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.067 0.933 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 27.352 8.810 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.065 4.065 3 C -0.197 4.197 4 C -0.089 4.089 5 N -0.232 5.232 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.505 6.505 9 N -0.212 5.212 10 C -0.464 4.464 11 H 0.092 0.908 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.198 1.198 16 H -0.190 1.190 17 H -0.200 1.200 18 C -0.091 4.091 19 C 0.050 3.950 20 H 0.085 0.915 21 N -0.367 5.367 22 C 0.289 3.711 23 O -0.468 6.468 24 C -0.160 4.160 25 C -0.126 4.126 26 C -0.175 4.175 27 C -0.179 4.179 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.259 0.741 44 H 0.134 0.866 45 H 0.145 0.855 46 H 0.082 0.918 47 H 0.114 0.886 48 H 0.061 0.939 49 H 0.088 0.912 50 H 0.101 0.899 51 H 0.085 0.915 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.410 25.997 9.635 27.830 hybrid contribution 1.139 -1.084 -0.377 1.617 sum -1.271 24.913 9.258 26.608 Atomic orbital electron populations 1.21802 0.92735 1.01599 1.02771 1.21514 0.97077 0.96310 0.91644 1.21877 1.01253 0.92524 1.04040 1.23453 1.01382 0.86469 0.97584 1.64990 1.40733 1.16045 1.01390 1.21915 0.96355 0.90671 0.99254 1.20888 0.82602 0.89222 0.84754 1.90507 1.46456 1.79697 1.33850 1.41905 1.38644 1.08002 1.32680 1.19575 1.24309 0.85130 1.17365 0.90850 1.26001 0.95236 1.04265 0.95618 1.69654 1.26372 1.37918 1.22057 0.85027 0.78397 0.76907 0.78226 1.19775 1.19026 1.19984 1.23332 0.96595 0.98094 0.91118 1.21490 0.92016 0.89318 0.92163 0.91538 1.46247 1.49755 1.31364 1.09358 1.21621 0.81482 0.85366 0.82598 1.90728 1.51260 1.31925 1.72876 1.21763 1.00367 0.99853 0.94064 1.22325 0.98391 0.99331 0.92581 1.22996 0.96366 1.01047 0.97139 1.22795 0.96441 1.02310 0.96386 1.22961 0.96589 1.01357 0.95295 0.92259 0.89995 0.94183 0.91201 0.89806 0.90808 0.88645 0.91431 0.86602 0.91084 0.76940 0.91218 0.93793 0.94282 0.74091 0.86640 0.85512 0.91836 0.88629 0.93949 0.91182 0.89914 0.91461 0.87648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.24 71.98 0.59 -1.90 16 2 C -0.06 -1.22 1.03 -51.28 -0.05 -1.27 16 3 C -0.14 -1.41 7.11 71.98 0.51 -0.90 16 4 C 0.04 0.84 5.55 86.45 0.48 1.32 16 5 N -0.51 -17.28 4.98 -885.57 -4.41 -21.69 16 6 C 0.05 1.79 5.32 85.56 0.46 2.25 16 7 C 0.44 22.23 7.63 87.66 0.67 22.90 16 8 O -0.62 -37.22 14.80 -3.07 -0.05 -37.26 16 9 N -0.57 -30.84 5.29 -306.98 -1.62 -32.47 16 10 C -0.33 -19.85 9.68 84.04 0.81 -19.04 16 11 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 12 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 13 N -0.92 -50.64 13.05 21.66 0.28 -50.36 16 14 Si 0.99 44.57 29.55 68.60 2.03 46.59 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C 0.04 1.35 5.65 86.42 0.49 1.84 16 19 C 0.16 4.22 3.01 45.89 0.14 4.36 16 20 H 0.07 2.26 7.17 -2.39 -0.02 2.25 16 21 N -0.71 -14.33 4.55 -438.29 -2.00 -16.32 16 22 C 0.50 12.29 7.83 87.66 0.69 12.97 16 23 O -0.59 -21.54 15.43 -3.04 -0.05 -21.59 16 24 C -0.12 -1.77 5.54 29.85 0.17 -1.60 16 25 C -0.11 -1.98 3.15 -10.27 -0.03 -2.01 16 26 C -0.14 -2.40 7.63 31.12 0.24 -2.17 16 27 C -0.14 -2.00 8.08 31.12 0.25 -1.75 16 28 C -0.12 -1.57 7.64 31.12 0.24 -1.33 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.55 6.94 -2.39 -0.02 0.53 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.63 7.74 -2.38 -0.02 0.62 16 35 H 0.10 1.92 7.86 -2.38 -0.02 1.90 16 36 H 0.07 1.20 7.68 -2.39 -0.02 1.18 16 37 H 0.12 3.57 8.08 -2.39 -0.02 3.55 16 38 H 0.07 2.26 7.77 -2.39 -0.02 2.24 16 39 H 0.40 19.94 7.90 -92.72 -0.73 19.21 16 40 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.04 1.47 7.67 -2.39 -0.02 1.45 16 42 H 0.04 1.85 7.24 -2.38 -0.02 1.83 16 43 H 0.42 4.99 5.85 -92.71 -0.54 4.45 16 44 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.13 0.99 7.84 -2.39 -0.02 0.97 16 46 H 0.06 1.65 7.67 -2.38 -0.02 1.63 16 47 H 0.10 1.28 7.89 -2.39 -0.02 1.26 16 48 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.11 0.83 8.10 -2.39 -0.02 0.81 16 Total: -1.00 -82.19 409.72 -0.06 -82.25 By element: Atomic # 1 Polarization: 37.69 SS G_CDS: -0.36 Total: 37.34 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.11 Total: 13.51 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -7.74 Total: -120.83 kcal Atomic # 8 Polarization: -58.76 SS G_CDS: -0.09 Total: -58.85 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -82.19 -0.06 -82.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755407078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.939 kcal (2) G-P(sol) polarization free energy of solvation -82.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.15 seconds