Wall clock time and date at job start Sat Apr 11 2020 05:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46757 * 2 1 4 4 N 1.46900 * 109.46893 * 120.00477 * 2 1 3 5 5 C 1.46901 * 110.99706 * 274.99733 * 4 2 1 6 6 C 1.50700 * 109.46865 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00167 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99863 * 180.02562 * 6 5 4 9 9 C 1.37095 * 119.99930 * 179.97438 * 8 6 5 10 10 H 1.07996 * 120.00051 * 0.02562 * 9 8 6 11 11 C 1.38950 * 119.99912 * 179.97438 * 9 8 6 12 12 N 1.31417 * 119.99986 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00176 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47169 * 180.02562 * 13 11 9 15 15 H 1.48504 * 109.46776 * 60.00528 * 13 11 9 16 16 H 1.48503 * 109.47274 * 300.00907 * 13 11 9 17 17 C 1.53002 * 109.47034 * 240.00216 * 2 1 3 18 18 H 1.09002 * 109.49484 * 185.06588 * 17 2 1 19 19 C 1.53043 * 109.49680 * 305.16046 * 17 2 1 20 20 C 1.53042 * 109.53671 * 181.31612 * 19 17 2 21 21 C 1.53192 * 109.31120 * 298.63787 * 20 19 17 22 22 N 1.46919 * 108.78060 * 54.63413 * 21 20 19 23 23 C 1.34778 * 120.63147 * 126.36254 * 22 21 20 24 24 O 1.21280 * 119.99777 * 175.12564 * 23 22 21 25 25 C 1.50698 * 120.00186 * 355.13233 * 23 22 21 26 26 C 1.52995 * 115.54675 * 280.55912 * 25 23 22 27 27 C 1.53000 * 117.50074 * 134.85413 * 25 23 22 28 28 C 1.52995 * 117.49743 * 66.22816 * 25 23 22 29 29 C 1.46934 * 118.73907 * 306.39290 * 22 21 20 30 30 H 1.08994 * 109.46879 * 299.99913 * 1 2 3 31 31 H 1.09002 * 109.47008 * 59.99758 * 1 2 3 32 32 H 1.09005 * 109.46741 * 179.97438 * 1 2 3 33 33 H 1.00893 * 111.00235 * 38.94979 * 4 2 1 34 34 H 1.09000 * 109.47213 * 60.00591 * 5 4 2 35 35 H 1.09000 * 109.47245 * 300.00118 * 5 4 2 36 36 H 0.96999 * 119.99608 * 0.02562 * 8 6 5 37 37 H 0.96991 * 119.99653 * 359.97438 * 12 11 9 38 38 H 1.08993 * 109.45921 * 301.33707 * 19 17 2 39 39 H 1.09003 * 109.45632 * 61.29763 * 19 17 2 40 40 H 1.09003 * 109.49421 * 178.68671 * 20 19 17 41 41 H 1.08997 * 109.52248 * 58.60571 * 20 19 17 42 42 H 1.09001 * 109.58932 * 294.84529 * 21 20 19 43 43 H 1.09005 * 109.58470 * 174.42491 * 21 20 19 44 44 H 1.09000 * 109.47479 * 64.26428 * 26 25 23 45 45 H 1.09001 * 109.47165 * 184.25359 * 26 25 23 46 46 H 1.08996 * 109.47518 * 304.25814 * 26 25 23 47 47 H 1.09002 * 117.49739 * 359.97438 * 27 25 23 48 48 H 1.08991 * 117.49981 * 145.02479 * 27 25 23 49 49 H 1.09006 * 117.49999 * 214.97820 * 28 25 23 50 50 H 1.09004 * 117.50182 * 0.02562 * 28 25 23 51 51 H 1.09000 * 109.58475 * 293.82050 * 29 22 21 52 52 H 1.08997 * 109.58761 * 173.39062 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8696 -1.6984 3.4696 8 7 2.7286 0.1203 4.7324 9 6 3.1885 -0.5568 5.8322 10 1 3.4388 -1.6046 5.7556 11 6 3.3334 0.1052 7.0452 12 7 3.0293 1.3803 7.1383 13 14 3.9593 -0.8175 8.5440 14 1 4.0224 0.1074 9.7040 15 1 5.3153 -1.3545 8.2641 16 1 3.0373 -1.9393 8.8554 17 6 2.0401 -0.7212 -1.2493 18 1 3.1263 -0.8007 -1.2055 19 6 1.4270 -2.1219 -1.3165 20 6 1.9619 -2.8561 -2.5482 21 6 1.5561 -2.0895 -3.8109 22 7 2.0172 -0.6999 -3.6893 23 6 2.7768 -0.1416 -4.6525 24 8 3.0774 1.0314 -4.5841 25 6 3.2526 -0.9748 -5.8145 26 6 4.4621 -1.8688 -5.5340 27 6 3.1303 -0.3699 -7.2146 28 6 2.1946 -1.5020 -6.7858 29 6 1.6350 0.0696 -2.4972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4496 -1.4979 1.4100 34 1 1.0871 0.6161 2.5526 35 1 2.7589 1.0461 2.1182 36 1 2.5034 1.0613 4.8013 37 1 2.7040 1.8593 6.3602 38 1 1.6934 -2.6783 -0.4179 39 1 0.3422 -2.0405 -1.3849 40 1 1.5429 -3.8618 -2.5826 41 1 3.0488 -2.9165 -2.4928 42 1 0.4713 -2.1066 -3.9160 43 1 2.0171 -2.5525 -4.6834 44 1 4.1955 -2.6172 -4.7876 45 1 4.7673 -2.3666 -6.4544 46 1 5.2851 -1.2599 -5.1600 47 1 2.7053 0.6306 -7.2951 48 1 3.9116 -0.6088 -7.9360 49 1 2.3603 -2.4857 -7.2254 50 1 1.1544 -1.2458 -6.5846 51 1 0.5567 0.2285 -2.4952 52 1 2.1482 1.0311 -2.5030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268174819.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:09:42 Heat of formation + Delta-G solvation = -53.742897 kcal Electronic energy + Delta-G solvation = -29840.548223 eV Core-core repulsion = 25840.285638 eV Total energy + Delta-G solvation = -4000.262585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.90325 -39.04156 -38.19431 -37.02290 -36.14064 -34.28679 -32.79571 -31.89298 -31.02192 -29.28131 -28.79059 -26.53233 -25.97325 -24.59036 -23.63114 -23.00532 -22.63400 -21.73114 -19.71029 -19.28596 -18.81748 -17.89873 -17.14715 -16.56522 -16.33199 -15.74849 -15.45660 -15.19579 -14.89878 -14.75828 -14.47166 -14.46817 -14.03275 -13.80430 -13.64235 -13.53786 -13.42048 -13.16342 -12.93482 -12.81153 -12.69028 -12.43284 -12.31229 -12.00287 -11.88137 -11.61998 -11.55466 -11.21199 -11.19369 -11.00737 -10.94660 -10.89414 -10.75774 -10.44498 -10.33312 -10.20070 -9.85643 -9.85574 -9.53586 -8.86254 -8.49799 -8.09165 -8.01250 -6.74282 -3.87315 2.31880 2.63827 3.22647 3.31798 3.35404 3.55875 3.85997 4.05150 4.07926 4.22880 4.34632 4.36590 4.50232 4.55321 4.63836 4.71456 4.88738 4.96394 5.06439 5.06688 5.11398 5.13956 5.21021 5.21990 5.26663 5.29024 5.33679 5.36477 5.41724 5.43714 5.51417 5.56991 5.63416 5.65171 5.71551 5.75034 5.76622 5.86348 5.88723 5.96311 6.02906 6.07413 6.18470 6.28002 6.34315 7.13226 7.17716 7.62534 7.82051 7.92499 8.09142 8.61522 8.81223 9.48970 9.89275 10.69186 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.001940 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.971814 B =14431.453216 C =14494.511322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.090 3.910 3 H 0.078 0.922 4 N -0.660 5.660 5 C 0.050 3.950 6 C 0.444 3.556 7 O -0.577 6.577 8 N -0.576 5.576 9 C -0.382 4.382 10 H 0.099 0.901 11 C -0.011 4.011 12 N -0.901 5.901 13 Si 1.092 2.908 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.086 4.086 18 H 0.083 0.917 19 C -0.118 4.118 20 C -0.135 4.135 21 C 0.105 3.895 22 N -0.603 5.603 23 C 0.551 3.449 24 O -0.538 6.538 25 C -0.157 4.157 26 C -0.109 4.109 27 C -0.145 4.145 28 C -0.167 4.167 29 C 0.114 3.886 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.349 0.651 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.375 0.625 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.105 0.895 50 H 0.097 0.903 51 H 0.069 0.931 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 -5.462 -27.718 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.021 4.021 3 H 0.096 0.904 4 N -0.292 5.292 5 C -0.082 4.082 6 C 0.229 3.771 7 O -0.461 6.461 8 N -0.214 5.214 9 C -0.511 4.511 10 H 0.116 0.884 11 C -0.213 4.213 12 N -0.540 5.540 13 Si 0.918 3.082 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.106 4.106 18 H 0.102 0.898 19 C -0.155 4.155 20 C -0.173 4.173 21 C -0.018 4.018 22 N -0.336 5.336 23 C 0.339 3.661 24 O -0.414 6.414 25 C -0.160 4.160 26 C -0.166 4.166 27 C -0.183 4.183 28 C -0.204 4.204 29 C -0.009 4.009 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.170 0.830 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.208 0.792 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.116 0.884 51 H 0.087 0.913 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.292 -5.394 -26.240 27.130 hybrid contribution -1.541 0.511 -1.333 2.100 sum -5.833 -4.884 -27.572 28.603 Atomic orbital electron populations 1.22662 0.97545 1.02436 1.02108 1.21483 0.92344 0.97878 0.90418 0.90360 1.60129 1.57715 1.09004 1.02366 1.21701 0.99768 0.95798 0.90962 1.19755 0.85122 0.88265 0.83921 1.90519 1.54883 1.16218 1.84452 1.41944 1.58951 1.11602 1.08949 1.20524 1.43904 0.97877 0.88796 0.88360 1.26518 0.97048 0.96669 1.01048 1.70900 1.41963 1.08555 1.32625 0.83128 0.76454 0.74511 0.74142 1.20424 1.20995 1.21050 1.21456 1.01777 0.94940 0.92425 0.89830 1.21633 0.99897 0.95622 0.98348 1.21933 1.01992 0.98915 0.94501 1.21866 0.99522 0.81075 0.99300 1.48016 1.51439 1.13768 1.20374 1.19574 0.77226 0.86915 0.82417 1.90698 1.56994 1.16436 1.77281 1.21395 1.00650 1.03125 0.90863 1.21278 0.94881 0.98045 1.02417 1.23041 1.02152 0.98555 0.94523 1.23177 0.95878 0.99517 1.01791 1.21758 1.00172 0.95716 0.83237 0.92587 0.92045 0.91881 0.83045 0.93948 0.89710 0.79159 0.92775 0.90411 0.91827 0.90696 0.91306 0.91484 0.89232 0.91503 0.91338 0.91481 0.88155 0.87798 0.87697 0.88416 0.91299 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 8.43 37.16 0.31 -1.58 16 2 C 0.09 1.07 2.37 -67.71 -0.16 0.90 16 3 H 0.08 0.95 7.80 -51.93 -0.41 0.54 16 4 N -0.66 -10.33 5.53 -107.99 -0.60 -10.93 16 5 C 0.05 0.88 5.96 -4.98 -0.03 0.86 16 6 C 0.44 10.55 7.82 -10.98 -0.09 10.46 16 7 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 8 N -0.58 -14.66 5.28 -10.96 -0.06 -14.71 16 9 C -0.38 -10.84 9.68 -14.93 -0.14 -10.98 16 10 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 11 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 12 N -0.90 -25.48 13.68 55.50 0.76 -24.72 16 13 Si 1.09 24.47 29.92 -169.99 -5.09 19.39 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 C -0.09 -0.94 2.32 -90.50 -0.21 -1.15 16 18 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 19 C -0.12 -1.11 4.47 -26.69 -0.12 -1.23 16 20 C -0.14 -1.04 6.08 -26.61 -0.16 -1.21 16 21 C 0.11 0.74 6.01 -3.71 -0.02 0.72 16 22 N -0.60 -5.87 2.97 -172.77 -0.51 -6.38 16 23 C 0.55 6.31 6.87 -10.99 -0.08 6.24 16 24 O -0.54 -8.33 16.42 5.56 0.09 -8.23 16 25 C -0.16 -1.28 1.33 -155.67 -0.21 -1.49 16 26 C -0.11 -0.75 9.57 37.16 0.36 -0.39 16 27 C -0.15 -1.04 9.84 -26.73 -0.26 -1.30 16 28 C -0.17 -0.95 8.24 -26.73 -0.22 -1.17 16 29 C 0.11 1.17 5.57 -3.71 -0.02 1.15 16 30 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 31 H 0.06 0.53 6.46 -51.93 -0.34 0.19 16 32 H 0.06 0.61 6.36 -51.93 -0.33 0.28 16 33 H 0.35 5.64 7.48 -39.30 -0.29 5.35 16 34 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 35 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 36 H 0.38 8.83 6.73 -40.82 -0.27 8.56 16 37 H 0.26 7.10 6.77 -40.82 -0.28 6.82 16 38 H 0.08 0.88 7.28 -51.93 -0.38 0.50 16 39 H 0.06 0.54 6.42 -51.93 -0.33 0.21 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.51 4.58 -51.93 -0.24 0.28 16 44 H 0.07 0.43 7.51 -51.93 -0.39 0.04 16 45 H 0.07 0.35 8.10 -51.93 -0.42 -0.08 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 0.63 6.35 -51.93 -0.33 0.30 16 52 H 0.09 1.11 7.04 -51.93 -0.37 0.74 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -34.65 403.26 -8.93 -43.58 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -8.54 Total: 12.23 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.15 Total: -0.56 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.41 Total: -56.75 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.18 Total: -23.96 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.09 Total: 19.39 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.65 -8.93 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268174819.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.167 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds