Wall clock time and date at job start Sat Apr 11 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46757 * 2 1 4 4 N 1.46900 * 109.46893 * 120.00477 * 2 1 3 5 5 C 1.46901 * 110.99706 * 274.99733 * 4 2 1 6 6 C 1.50700 * 109.46865 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00167 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99863 * 180.02562 * 6 5 4 9 9 C 1.37095 * 119.99930 * 179.97438 * 8 6 5 10 10 H 1.07996 * 120.00051 * 0.02562 * 9 8 6 11 11 C 1.38950 * 119.99912 * 179.97438 * 9 8 6 12 12 N 1.31417 * 119.99986 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 120.00176 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47169 * 180.02562 * 13 11 9 15 15 H 1.48504 * 109.46776 * 60.00528 * 13 11 9 16 16 H 1.48503 * 109.47274 * 300.00907 * 13 11 9 17 17 C 1.53002 * 109.47034 * 240.00216 * 2 1 3 18 18 H 1.09002 * 109.49484 * 185.06588 * 17 2 1 19 19 C 1.53043 * 109.49680 * 305.16046 * 17 2 1 20 20 C 1.53042 * 109.53671 * 181.31612 * 19 17 2 21 21 C 1.53192 * 109.31120 * 298.63787 * 20 19 17 22 22 N 1.46919 * 108.78060 * 54.63413 * 21 20 19 23 23 C 1.34778 * 120.63147 * 126.36254 * 22 21 20 24 24 O 1.21280 * 119.99777 * 175.12564 * 23 22 21 25 25 C 1.50698 * 120.00186 * 355.13233 * 23 22 21 26 26 C 1.52995 * 115.54675 * 280.55912 * 25 23 22 27 27 C 1.53000 * 117.50074 * 134.85413 * 25 23 22 28 28 C 1.52995 * 117.49743 * 66.22816 * 25 23 22 29 29 C 1.46934 * 118.73907 * 306.39290 * 22 21 20 30 30 H 1.08994 * 109.46879 * 299.99913 * 1 2 3 31 31 H 1.09002 * 109.47008 * 59.99758 * 1 2 3 32 32 H 1.09005 * 109.46741 * 179.97438 * 1 2 3 33 33 H 1.00893 * 111.00235 * 38.94979 * 4 2 1 34 34 H 1.09000 * 109.47213 * 60.00591 * 5 4 2 35 35 H 1.09000 * 109.47245 * 300.00118 * 5 4 2 36 36 H 0.96999 * 119.99608 * 0.02562 * 8 6 5 37 37 H 0.96991 * 119.99653 * 359.97438 * 12 11 9 38 38 H 1.08993 * 109.45921 * 301.33707 * 19 17 2 39 39 H 1.09003 * 109.45632 * 61.29763 * 19 17 2 40 40 H 1.09003 * 109.49421 * 178.68671 * 20 19 17 41 41 H 1.08997 * 109.52248 * 58.60571 * 20 19 17 42 42 H 1.09001 * 109.58932 * 294.84529 * 21 20 19 43 43 H 1.09005 * 109.58470 * 174.42491 * 21 20 19 44 44 H 1.09000 * 109.47479 * 64.26428 * 26 25 23 45 45 H 1.09001 * 109.47165 * 184.25359 * 26 25 23 46 46 H 1.08996 * 109.47518 * 304.25814 * 26 25 23 47 47 H 1.09002 * 117.49739 * 359.97438 * 27 25 23 48 48 H 1.08991 * 117.49981 * 145.02479 * 27 25 23 49 49 H 1.09006 * 117.49999 * 214.97820 * 28 25 23 50 50 H 1.09004 * 117.50182 * 0.02562 * 28 25 23 51 51 H 1.09000 * 109.58475 * 293.82050 * 29 22 21 52 52 H 1.08997 * 109.58761 * 173.39062 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5885 -0.5217 3.5557 7 8 2.8696 -1.6984 3.4696 8 7 2.7286 0.1203 4.7324 9 6 3.1885 -0.5568 5.8322 10 1 3.4388 -1.6046 5.7556 11 6 3.3334 0.1052 7.0452 12 7 3.0293 1.3803 7.1383 13 14 3.9593 -0.8175 8.5440 14 1 4.0224 0.1074 9.7040 15 1 5.3153 -1.3545 8.2641 16 1 3.0373 -1.9393 8.8554 17 6 2.0401 -0.7212 -1.2493 18 1 3.1263 -0.8007 -1.2055 19 6 1.4270 -2.1219 -1.3165 20 6 1.9619 -2.8561 -2.5482 21 6 1.5561 -2.0895 -3.8109 22 7 2.0172 -0.6999 -3.6893 23 6 2.7768 -0.1416 -4.6525 24 8 3.0774 1.0314 -4.5841 25 6 3.2526 -0.9748 -5.8145 26 6 4.4621 -1.8688 -5.5340 27 6 3.1303 -0.3699 -7.2146 28 6 2.1946 -1.5020 -6.7858 29 6 1.6350 0.0696 -2.4972 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4496 -1.4979 1.4100 34 1 1.0871 0.6161 2.5526 35 1 2.7589 1.0461 2.1182 36 1 2.5034 1.0613 4.8013 37 1 2.7040 1.8593 6.3602 38 1 1.6934 -2.6783 -0.4179 39 1 0.3422 -2.0405 -1.3849 40 1 1.5429 -3.8618 -2.5826 41 1 3.0488 -2.9165 -2.4928 42 1 0.4713 -2.1066 -3.9160 43 1 2.0171 -2.5525 -4.6834 44 1 4.1955 -2.6172 -4.7876 45 1 4.7673 -2.3666 -6.4544 46 1 5.2851 -1.2599 -5.1600 47 1 2.7053 0.6306 -7.2951 48 1 3.9116 -0.6088 -7.9360 49 1 2.3603 -2.4857 -7.2254 50 1 1.1544 -1.2458 -6.5846 51 1 0.5567 0.2285 -2.4952 52 1 2.1482 1.0311 -2.5030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268174819.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:09:41 Heat of formation + Delta-G solvation = -77.677897 kcal Electronic energy + Delta-G solvation = -29841.586122 eV Core-core repulsion = 25840.285638 eV Total energy + Delta-G solvation = -4001.300484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69134 -40.45550 -39.54645 -37.76557 -37.23543 -36.30380 -33.85152 -33.13403 -32.69834 -30.05872 -29.52540 -27.93649 -26.87276 -26.01167 -24.95544 -23.61154 -23.28377 -22.54338 -21.54897 -20.23078 -19.98830 -19.54802 -18.25650 -17.77296 -17.25506 -16.99872 -16.56397 -16.45395 -16.09523 -15.92444 -15.53390 -15.47068 -15.28331 -15.09184 -14.74123 -14.54740 -14.27389 -14.22786 -13.89231 -13.59945 -13.46217 -13.35513 -13.29937 -13.24550 -13.16547 -12.77405 -12.59396 -12.46965 -12.35779 -12.02186 -11.92550 -11.90485 -11.78841 -11.63433 -11.53562 -11.52039 -11.17723 -11.00948 -10.65054 -10.41952 -10.12687 -9.66999 -9.35320 -8.94173 -6.08104 1.48179 1.51546 1.53650 1.82036 1.90070 1.98925 2.39640 2.68079 2.79620 3.15309 3.37856 3.40933 3.66461 3.75064 3.77047 3.90070 3.97279 4.03379 4.07675 4.13721 4.21260 4.27275 4.29787 4.33173 4.40513 4.48263 4.56302 4.62794 4.69430 4.74960 4.76233 4.78500 4.83385 4.89307 4.94323 4.95088 4.95733 5.04303 5.16108 5.18913 5.19977 5.28539 5.35468 5.48564 5.51663 5.58364 5.92813 6.00372 6.34828 6.38970 6.56447 6.72871 7.09124 7.42619 7.90401 8.53374 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024928 B = 0.001940 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.971814 B =14431.453216 C =14494.511322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.091 3.909 3 H 0.075 0.925 4 N -0.674 5.674 5 C 0.066 3.934 6 C 0.442 3.558 7 O -0.616 6.616 8 N -0.587 5.587 9 C -0.410 4.410 10 H 0.074 0.926 11 C -0.044 4.044 12 N -0.917 5.917 13 Si 1.134 2.866 14 H -0.273 1.273 15 H -0.274 1.274 16 H -0.271 1.271 17 C -0.076 4.076 18 H 0.052 0.948 19 C -0.115 4.115 20 C -0.131 4.131 21 C 0.104 3.896 22 N -0.601 5.601 23 C 0.542 3.458 24 O -0.591 6.591 25 C -0.174 4.174 26 C -0.105 4.105 27 C -0.155 4.155 28 C -0.138 4.138 29 C 0.118 3.882 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.346 0.654 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.384 0.616 37 H 0.259 0.741 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.071 0.929 45 H 0.092 0.908 46 H 0.044 0.956 47 H 0.081 0.919 48 H 0.121 0.879 49 H 0.133 0.867 50 H 0.100 0.900 51 H 0.089 0.911 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 -6.859 -29.399 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.019 4.019 3 H 0.093 0.907 4 N -0.306 5.306 5 C -0.067 4.067 6 C 0.230 3.770 7 O -0.502 6.502 8 N -0.226 5.226 9 C -0.539 4.539 10 H 0.092 0.908 11 C -0.242 4.242 12 N -0.556 5.556 13 Si 0.954 3.046 14 H -0.197 1.197 15 H -0.199 1.199 16 H -0.196 1.196 17 C -0.096 4.096 18 H 0.070 0.930 19 C -0.152 4.152 20 C -0.169 4.169 21 C -0.017 4.017 22 N -0.332 5.332 23 C 0.331 3.669 24 O -0.472 6.472 25 C -0.178 4.178 26 C -0.162 4.162 27 C -0.192 4.192 28 C -0.175 4.175 29 C -0.005 4.005 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.218 0.782 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.139 0.861 49 H 0.151 0.849 50 H 0.118 0.882 51 H 0.107 0.893 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.781 -6.797 -27.952 29.342 hybrid contribution -1.092 0.949 -0.884 1.695 sum -6.873 -5.849 -28.835 30.215 Atomic orbital electron populations 1.22578 0.95419 1.03149 1.02818 1.21537 0.93991 0.97344 0.89050 0.90722 1.60112 1.58773 1.09058 1.02671 1.21549 1.00952 0.95381 0.88808 1.20864 0.83214 0.88045 0.84891 1.90488 1.56112 1.18274 1.85302 1.42008 1.59533 1.12023 1.09080 1.20523 1.45604 0.97309 0.90475 0.90829 1.27871 0.96259 0.96766 1.03318 1.70972 1.42780 1.09070 1.32759 0.82625 0.76702 0.73986 0.71289 1.19733 1.19907 1.19630 1.21303 0.99888 0.96141 0.92295 0.92972 1.21605 1.00871 0.94288 0.98437 1.21916 1.01138 0.99979 0.93917 1.22092 1.00858 0.79205 0.99538 1.48153 1.50695 1.14817 1.19563 1.20257 0.76634 0.86649 0.83364 1.90663 1.58981 1.18875 1.78651 1.21394 1.02409 1.03940 0.90010 1.21277 0.93647 0.97594 1.03699 1.23116 1.03413 0.98443 0.94223 1.23304 0.95168 1.00104 0.98926 1.21649 1.00879 0.94662 0.83325 0.93057 0.90123 0.91142 0.83398 0.91417 0.88408 0.78189 0.93048 0.92463 0.90025 0.88419 0.92815 0.89356 0.87439 0.91019 0.88883 0.93648 0.90055 0.86100 0.84855 0.88151 0.89333 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.43 71.98 0.61 -2.64 16 2 C 0.09 2.09 2.37 44.92 0.11 2.20 16 3 H 0.07 1.78 7.80 -2.39 -0.02 1.76 16 4 N -0.67 -20.98 5.53 -495.56 -2.74 -23.72 16 5 C 0.07 2.27 5.96 85.56 0.51 2.78 16 6 C 0.44 21.30 7.82 87.66 0.69 21.99 16 7 O -0.62 -34.58 15.78 -3.05 -0.05 -34.63 16 8 N -0.59 -30.37 5.28 -306.98 -1.62 -31.99 16 9 C -0.41 -23.75 9.68 84.04 0.81 -22.94 16 10 H 0.07 4.56 7.16 -2.91 -0.02 4.54 16 11 C -0.04 -2.43 5.50 84.93 0.47 -1.96 16 12 N -0.92 -51.83 13.68 21.66 0.30 -51.54 16 13 Si 1.13 49.01 29.92 68.60 2.05 51.06 16 14 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 15 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 17 C -0.08 -1.64 2.32 -10.71 -0.02 -1.66 16 18 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 19 C -0.11 -2.01 4.47 30.62 0.14 -1.87 16 20 C -0.13 -1.76 6.08 30.67 0.19 -1.57 16 21 C 0.10 1.18 6.01 86.36 0.52 1.70 16 22 N -0.60 -11.12 2.97 -818.90 -2.43 -13.56 16 23 C 0.54 12.42 6.87 87.66 0.60 13.02 16 24 O -0.59 -19.24 16.42 -3.03 -0.05 -19.29 16 25 C -0.17 -2.62 1.33 -52.93 -0.07 -2.69 16 26 C -0.10 -1.29 9.57 71.98 0.69 -0.61 16 27 C -0.15 -1.99 9.84 30.60 0.30 -1.69 16 28 C -0.14 -1.15 8.24 30.59 0.25 -0.89 16 29 C 0.12 2.37 5.57 86.36 0.48 2.85 16 30 H 0.05 0.99 7.45 -2.39 -0.02 0.97 16 31 H 0.08 1.15 6.46 -2.39 -0.02 1.14 16 32 H 0.07 1.18 6.36 -2.38 -0.02 1.16 16 33 H 0.35 11.13 7.48 -89.70 -0.67 10.46 16 34 H 0.07 2.03 7.44 -2.39 -0.02 2.01 16 35 H 0.10 3.16 8.06 -2.39 -0.02 3.14 16 36 H 0.38 18.29 6.73 -92.71 -0.62 17.66 16 37 H 0.26 14.17 6.77 -92.71 -0.63 13.54 16 38 H 0.06 1.27 7.28 -2.39 -0.02 1.25 16 39 H 0.08 1.15 6.42 -2.39 -0.02 1.14 16 40 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.11 0.86 4.58 -2.38 -0.01 0.85 16 44 H 0.07 0.79 7.51 -2.39 -0.02 0.77 16 45 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 46 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 50 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.09 1.43 6.35 -2.39 -0.02 1.42 16 52 H 0.07 1.68 7.04 -2.39 -0.02 1.66 16 Total: -1.00 -78.47 403.26 1.50 -76.97 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.21 Total: 40.68 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.26 Total: 6.01 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -6.50 Total: -120.81 kcal Atomic # 8 Polarization: -53.82 SS G_CDS: -0.10 Total: -53.92 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.05 Total: 51.06 kcal Total: -78.47 1.50 -76.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268174819.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.708 kcal (2) G-P(sol) polarization free energy of solvation -78.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds